SPCC16C4.02c

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC16C4.02c Gene Start664355
Synonyms Gene End661446
ProductDUF1941 family protein Gene Length2910
Feature Typeprotein coding CDS Start663988
Name Description CDS End662342
Characterisation Statusconserved_unknown CDS Length1647

Ensembl Gene Location
  1. SPNCRNA.1150
  2. smc6
  3. rpl2802
  4. SPCC16C4.19
  5. SPNCRNA.1151
  6. sif2
  7. SPCC16C4.20c
  8. SPCC16C4.02c
  9. pin1
  10. SPCC16C4.04
  11. SPCC16C4.06c
  12. SPCC16C4.05
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopySPCC16C4.02cdelta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0032153cell division siteIDAPMID:16823372
GO:0044732mitotic spindle pole bodyIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1664355661446

References

Region Start End Reference
three_prime_UTR662341661446PMID:21511999
five_prime_UTR664355663989PMID:21511999
three_prime_UTR662341661446PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF05536 Pfam Neurochondrin 61 539 1
SSF48371 IPR016024 SuperFamily 62 419 130

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.03 Da
Charge -17.00
Isoelectric point 4.80
Molecular weight 63.04 kDa
Number of residues 548
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide561.51PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.3PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide2.5PMID:23101633
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPCC16C4.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC16C4.02c Retrieval of eukaryotic orthologs
BioGrid SPCC16C4.02c BioGRID Interaction Datasets
Bähler Lab SPCC16C4.02c Cell Cycle Expression Profile
Bähler Lab SPCC16C4.02c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC16C4.02c Pheromone response/mating expression profiles
Bähler Lab SPCC16C4.02c Environmental stress expression profiles
Bähler Lab SPCC16C4.02c Bähler Lab Transcriptome Viewer
Cyclebase SPCC16C4.02c Cell Cycle Data
PInt SPCC16C4.02c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC16C4.02c Entrez Gene
EntrezGene2538903DUF1941 family protein
WikiGene2538903DUF1941 family protein
UniProtKB/SwissProtO74447Uncharacterized protein C16C4.02c
ModBaseO74447Database of comparative protein structure models
Pfam Protein DomainsO74447Pfam Domain Arrangement
RefSeq PeptideNP_587912DUF1941 family protein
RefSeq mRNANM_001022903972h- DUF1941 family protein (SPCC16C4.02c), mRNA
European Nucleotide ArchiveCAA20741ENA Protein Mapping
SPD / RIKEN34/34F05Orfeome Localization Data
UniParcUPI000006AE1EUniProt Archive

Literature for SPCC16C4.02c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013