rpl1201 (SPCC16C4.13c)

Gene Standard Namerpl1201 ChromosomeIII
Systematic IDSPCC16C4.13c Gene Start691690
Synonymsrpl12-1, rpl12.1 Gene End691089
Product60S ribosomal protein L12.1/L12A Gene Length602
Feature Typeprotein coding CDS Start691632
Name Description CDS End691135
Characterisation Statuspublished CDS Length498

Ensembl Gene Location
  1. sts5
  2. SPCC16C4.22
  3. SPCC16C4.10
  4. pef1
  5. naa20
  6. SPNCRNA.471
  7. rpl1201
  8. sfc4
  9. rml2
  10. SPCC16C4.16c
  11. mug123
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrpl1201delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAUniProtKB:KW-0694GO_REF:0000037
GO:0003735structural constituent of ribosomeIEAIPR000911, IPR020785, IPR020783GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0000027ribosomal large subunit assemblyISOSGD:S000000780GO_REF:0000024
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000000780GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005730nucleolusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0022625cytosolic large ribosomal subunitISOSGD:S000000780GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1691690691089

References

Region Start End Reference
three_prime_UTR691134691089PMID:21511999
five_prime_UTR691690691633PMID:21511999
three_prime_UTR691134691089PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF03946 IPR020784 Pfam Ribosomal protein L11 15 69 3
PF00298 IPR020783 Pfam Ribosomal protein L11 74 143 3
SM00649 IPR000911 SMART Ribosomal protein L11 13 144 3
PS00359 IPR020785 Prosite Patterns Ribosomal protein L11 130 145 2
G3DSA:3.30.1550.10 IPR020784 Gene3D 1 80 3
G3DSA:1.10.10.250 IPR020783 Gene3D 81 144 3
SSF54747 IPR020784 SuperFamily 1 86 3
SSF46906 IPR020783 SuperFamily 75 148 3
PTHR11661 IPR000911 hmmpanther Ribosomal protein L11 1 165 3

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00427methylated residuePMID:18195021
MOD:00696phosphorylated residuePMID:19547744

Protein Properties

Ave. residue weight 107.07 Da
Charge 6.00
Isoelectric point 10.08
Molecular weight 17.67 kDa
Number of residues 165
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide51168.31PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide248939PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide8.8PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide79PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Affinity Capture-MSPMID:21504829
lrp1leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
set11ribosomal protein lysine methyltransferase Set11 Biochemical ActivityPMID:18195021
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External References
Database Identifier Description
NBRP SPCC16C4.13c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC16C4.13c Retrieval of eukaryotic orthologs
BioGrid SPCC16C4.13c BioGRID Interaction Datasets
Bähler Lab SPCC16C4.13c Cell Cycle Expression Profile
Bähler Lab SPCC16C4.13c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC16C4.13c Pheromone response/mating expression profiles
Bähler Lab SPCC16C4.13c Environmental stress expression profiles
Bähler Lab SPCC16C4.13c Bähler Lab Transcriptome Viewer
Cyclebase SPCC16C4.13c Cell Cycle Data
PInt SPCC16C4.13c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC16C4.13c Entrez Gene
EntrezGene253901060S ribosomal protein L12.1/L12A
EntrezGene253918660S ribosomal protein L12.1/L12A
Uniprot_genenameRPL1201
WikiGene253901060S ribosomal protein L12.1/L12A
WikiGene253918660S ribosomal protein L12.1/L12A
SPD / RIKEN04/04G12Orfeome Localization Data
UniProtKB/SwissProtO7500060S ribosomal protein L12
ModBaseO75000Database of comparative protein structure models
Pfam Protein DomainsO75000Pfam Domain Arrangement
RefSeq PeptideNP_58792360S ribosomal protein L12.1/L12A
RefSeq mRNANM_001022914972h- 60S ribosomal protein L12.1/L12A (rpl1201), mRNA
European Nucleotide ArchiveCAA20752ENA Protein Mapping
European Nucleotide ArchiveCAA21221ENA Protein Mapping
UniParcUPI0000133BB0UniProt Archive

Literature for rpl1201
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013