SPCC1827.04

Synonyms ChromosomeIII
Productankyrin repeat protein, unknown biological role Gene Start2382309
Feature Typeprotein coding Gene End2384707
Name Description CDS Start2382732
Characterisation Statusconserved_unknown CDS End2384534

Ensembl Gene Location
SPCC1827.01c SPCC1827.02c SPCC1827.03c SPNCRNA.1293 SPNCRNA.523 > SPCC1827.04 < SPCC1827.05c SPCC1827.06c SPNCRNA.1294 SPCC1827.07c
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
123823092382630
223827022384707

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00023 Pfam Ankyrin repeat 435 461 22.2 10
48403 Superfamily 408 492 26.9 14
SM00248 Smart Ankyrin repeat 432 461 25.9 14
PS50088 PROSITE Ankyrin repeat 432 464 11.087 13
PS50297 PROSITE Ankyrin repeat-containing domain 432 473 13.283 15


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00696phosphorylated residueTemporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00696

Protein Properties

Ave. residue weight 114.65 Da
Charge 21.50
Isoelectric point 9.70
Molecular weight 68.79 kDa
Number of residues 600
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Protein Family

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DescriptionSourceAll Genes
ankyrin repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000453

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
dsc4conserved fungal protein Positive Genetic
alp13MRG family Clr6 histone deacetylase complex subunit Alp13 Phenotypic Suppression
dsc3conserved fungal protein Positive Genetic
SPAC26H5.05IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted) Phenotypic Suppression


External References

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Database Identifier Description
NBRP SPCC1827.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1827.04 Retrieval of eukaryotic orthologs
BioGrid SPCC1827.04 BioGRID Interaction Datasets
Bähler Lab SPCC1827.04 Cell Cycle Expression Profile
Bähler Lab SPCC1827.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1827.04 Pheromone response/mating expression profiles
Bähler Lab SPCC1827.04 Environmental stress expression profiles
Bähler Lab SPCC1827.04 Bähler Lab Transcriptome Viewer
Cyclebase SPCC1827.04 Cell Cycle Data
Entrez Gene SPCC1827.04 Link to Entrez Gene
SPD / RIKEN36/36E03Orfeome Localization Data
UniProtKB/SwissProtO74977VMS1 homolog C1827.04
ArrayExpressO74977Link to ArrayExpress
RefSeq PeptideNP_588550VMS1-like protein quality control
RefSeq mRNANM_001023537972h- VMS1-like protein quality control (SPCC1827.04), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA19312ENA Protein Mapping
UniParcUPI000006C01BUniProt Archive

Literature for SPCC1827.04

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Search: UK PMC or PubMed