SPCC24B10.16c

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC24B10.16c Gene Start930409
Synonyms Gene End927629
Productproteasome assembly chaperone 4 (predicted) Gene Length2781
Feature Typeprotein coding CDS Start930129
Name Description CDS End929755
Characterisation Statusbiological_role_inferred CDS Length375

Ensembl Gene Location
  1. mft1
  2. cgi121
  3. skb5
  4. snR94
  5. xlf1
  6. SPCTRNAARG.09
  7. SPRRNA.26
  8. SPNCRNA.475
  9. SPNCRNA.526
  10. SPCC24B10.15
  11. SPCC24B10.16c
  12. emp24
  13. SPCC24B10.18
  14. SPCC24B10.19c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPCC24B10.16cdelta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0007126meiosisIMPPMID:16169489
GO:0043248proteasome assemblyIGIPMID:22681890
ISOUniProtKB:Q9BT73GO_REF:0000001
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0000502proteasome complexIGIPMID:22681890
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1930409927629

References

Region Start End Reference
three_prime_UTR929754927629PMID:21511999
three_prime_UTR929754927629PMID:21511999
five_prime_UTR930409930130PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes

View domain organization at Pfam

Protein Properties

Ave. residue weight 108.85 Da
Charge -1.00
Isoelectric point 5.00
Molecular weight 13.50 kDa
Number of residues 124
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3096.35PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.18PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide0.73PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated PMID:21511999
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
alp13MRG family Clr6 histone deacetylase complex subunit Alp13 Negative GeneticPMID:22681890
gcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Negative GeneticPMID:22681890
hst2Sir2 family histone deacetylase Hst2 Negative GeneticPMID:22681890
ubp8SAGA complex ubiquitin C-terminal hydrolase Ubp8 Negative GeneticPMID:22681890
cph2Clr6 histone deacetylase associated PHD protein-2 Cph2 Negative GeneticPMID:22681890
nup60nucleoporin Nup60 Negative GeneticPMID:22681890
not3CCR4-Not complex subunit Not3/5 (predicted) Positive GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Negative GeneticPMID:22681890
tom70mitochondrial TOM complex subunit Tom70 (predicted) Positive GeneticPMID:22681890
cph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Negative GeneticPMID:22681890
fft3fun thirty related protein Fft3 Positive GeneticPMID:22681890
cid12poly(A) polymerase Cid12 Negative GeneticPMID:22681890
pmc2mediator complex subunit Pmc2/Med1 Negative GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Positive GeneticPMID:22681890
dad1DASH complex subunit Dad1 Positive GeneticPMID:22681890
hip4histone promoter control protein Hip4 Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPCC24B10.16c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC24B10.16c Retrieval of eukaryotic orthologs
BioGrid SPCC24B10.16c BioGRID Interaction Datasets
Bähler Lab SPCC24B10.16c Cell Cycle Expression Profile
Bähler Lab SPCC24B10.16c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC24B10.16c Pheromone response/mating expression profiles
Bähler Lab SPCC24B10.16c Environmental stress expression profiles
Bähler Lab SPCC24B10.16c Bähler Lab Transcriptome Viewer
Cyclebase SPCC24B10.16c Cell Cycle Data
PInt SPCC24B10.16c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC24B10.16c Entrez Gene
SPD / RIKEN01/01H09Orfeome Localization Data
EntrezGene2539365sequence orphan
WikiGene2539365sequence orphan
UniProtKB/SwissProtQ9P7J0Uncharacterized protein C24B10.16c
ModBaseQ9P7J0Database of comparative protein structure models
Pfam Protein DomainsQ9P7J0Pfam Domain Arrangement
RefSeq PeptideNP_588018PIN domain-containing protein
RefSeq PeptideNP_588019sequence orphan
RefSeq mRNANM_001023009972h- PIN domain-containing protein (SPCC24B10.15), mRNA
RefSeq mRNANM_001023010972h- sequence orphan (SPCC24B10.16c), mRNA
European Nucleotide ArchiveCAB76225ENA Protein Mapping
UniParcUPI000228F3F2UniProt Archive

Literature for SPCC24B10.16c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013