SPCC285.04

Synonyms ChromosomeIII
Producttransthyretin (predicted) Gene Start1800727
Feature Typeprotein coding Gene End1801508
Name Description CDS Start1801071
Characterisation Statusconserved_unknown CDS End1801445

Ensembl Gene Location
cox18 zta1 SPNCRNA.1230 ist1 SPCC285.03 SPNCRNA.1231 > SPCC285.04 < SPCC285.05 SPNCRNA.1232 wtf17 wtf18
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
118007271801508

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00576 Pfam Transthyretin/hydroxyisourate hydrolase 12 123 130.3 1
49472 Superfamily 10 124 117.1 1
SM00095 Smart Transthyretin/hydroxyisourate hydrolase, superfamily 7 123 24.2 1
PS00768 scanprosite Transthyretin/hydroxyisourate hydrolase 16 31 1
PS00769 scanprosite Transthyretin/hydroxyisourate hydrolase 107 119 1
PR00189 Prints Transthyretin/hydroxyisourate hydrolase 12 32 38.78 1
PR00189 Prints Transthyretin/hydroxyisourate hydrolase 47 72 26.19 1
PR00189 Prints Transthyretin/hydroxyisourate hydrolase 74 103 31.59 1
TIGR02962 Tigrfam Hydroxyisourate hydrolase 10 124 217.7 1

Protein Properties

Ave. residue weight 109.04 Da
Charge 0.50
Isoelectric point 6.80
Molecular weight 13.52 kDa
Number of residues 124
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005496steroid bindingISS Interpro:IPR000895GO_REF:0000024Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005496
GO:0033971hydroxyisourate hydrolase activityIEAGO_REF:0000003Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0033971

Species Distribution

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DescriptionSourceAll Genes
conserved in BacteriaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000086
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094


External References

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Database Identifier Description
NBRP SPCC285.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC285.04 Retrieval of eukaryotic orthologs
BioGrid SPCC285.04 BioGRID Interaction Datasets
Bähler Lab SPCC285.04 Cell Cycle Expression Profile
Bähler Lab SPCC285.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC285.04 Pheromone response/mating expression profiles
Bähler Lab SPCC285.04 Environmental stress expression profiles
Bähler Lab SPCC285.04 Bähler Lab Transcriptome Viewer
Cyclebase SPCC285.04 Cell Cycle Data
Entrez Gene SPCC285.04 Link to Entrez Gene
SPD / RIKEN02/02G02Orfeome Localization Data
UniProtKB/SwissProtO74492Probable 5-hydroxyisourate hydrolase
ArrayExpressO74492Link to ArrayExpress
RefSeq PeptideNP_588333transthyretin (predicted)
RefSeq mRNANM_001023324972h- transthyretin (predicted) (SPCC285.04), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA20843ENA Protein Mapping
UniParcUPI000006C6B4UniProt Archive

Literature for SPCC285.04

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Search: UK PMC or PubMed