SPCC306.06c

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC306.06c Gene Start419553
Synonyms Gene End418005
ProductER membrane protein, BIG1 family (predicted) Gene Length1549
Feature Typeprotein coding CDS Start419473
Name Description CDS End418476
Characterisation Statusbiological_role_inferred CDS Length998

Ensembl Gene Location
  1. cnd2
  2. set1
  3. ins1
  4. SPCC306.06c
  5. SPCC306.07c
  6. SPCC306.08c
  7. cap1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000054abnormal microtubule cytoskeleton organizationnot recorded (overexpression)unknownPMID:15797925
FYPO:0002061inviable vegetative cell populationMicroscopySPCC306.06cdelta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0006078(1->6)-beta-D-glucan biosynthetic processISSUniProtKB:Q875I7_CANALGO_REF:0000001
GO:0009272fungal-type cell wall biogenesisISOSGD:S000001143GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0000329fungal-type vacuole membraneIDAPMID:16823372
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0030176integral to endoplasmic reticulum membraneISOSGD:S000001143GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1419553419382
2419319418005

References

Region Start End Reference
five_prime_UTR419553419474PMID:21511999
three_prime_UTR418475418005PMID:21511999
three_prime_UTR418475418005PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF05827 IPR024722 Pfam BIG/ATPase V1 complex, subunit S1 21 295 1
TMhelix TMHMM 271 293 955
SignalP-noTM signalp 1 17 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 111.37 Da
Charge -10.00
Isoelectric point 4.65
Molecular weight 34.64 kDa
Number of residues 311
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide5109.15PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide6.1PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.7PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPCC306.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC306.06c Retrieval of eukaryotic orthologs
BioGrid SPCC306.06c BioGRID Interaction Datasets
Bähler Lab SPCC306.06c Cell Cycle Expression Profile
Bähler Lab SPCC306.06c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC306.06c Pheromone response/mating expression profiles
Bähler Lab SPCC306.06c Environmental stress expression profiles
Bähler Lab SPCC306.06c Bähler Lab Transcriptome Viewer
Cyclebase SPCC306.06c Cell Cycle Data
PInt SPCC306.06c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC306.06c Entrez Gene
WikiGene2539326ER membrane protein, BIG1 family (predicted)
Uniprot_genenameBIG1
EntrezGene2539326ER membrane protein, BIG1 family (predicted)
SPD / RIKEN14/14F02Orfeome Localization Data
UniProtKB/SwissProtQ9Y7R6Protein big1
ModBaseQ9Y7R6Database of comparative protein structure models
Pfam Protein DomainsQ9Y7R6Pfam Domain Arrangement
RefSeq PeptideNP_587814ER membrane protein, BIG1 family (predicted)
RefSeq mRNANM_001022807972h- ER membrane protein, BIG1 family (predicted) (SPCC306.06c), mRNA
European Nucleotide ArchiveCAB41654ENA Protein Mapping
UniParcUPI0000069B7FUniProt Archive

Literature for SPCC306.06c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013