SPCC306.07c

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC306.07c Gene Start421247
Synonyms Gene End419629
ProductU3 snoRNP-associated protein Cic1/Utp30 family (predicted) Gene Length1619
Feature Typeprotein coding CDS Start421135
Name Description CDS End420000
Characterisation Statusbiological_role_inferred CDS Length1136

Ensembl Gene Location
  1. set1
  2. ins1
  3. SPCC306.06c
  4. SPCC306.07c
  5. SPCC306.08c
  6. cap1
  7. wtf8
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPCC306.07cdelta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAIPR002143, IPR023674GO_REF:0000002
GO:0003735structural constituent of ribosomeIEAIPR002143, IPR023674, IPR016094GO_REF:0000002
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0006364rRNA processingIEAUniProtKB:KW-0698GO_REF:0000037
GO:0006412translationIEAIPR002143GO_REF:0000002
GO:0042273ribosomal large subunit biogenesisISOSGD:S000001094GO_REF:0000024
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005730nucleolusIDAPMID:16823372
ISOSGD:S000001094GO_REF:0000024
GO:0015934large ribosomal subunitIEAIPR002143, IPR023674GO_REF:0000002
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1421247421073
2421012420879
3420657419629

References

Region Start End Reference
three_prime_UTR419999419629PMID:21511999
five_prime_UTR421247421136PMID:21511999
three_prime_UTR419999419629PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00687 IPR002143 Pfam Ribosomal protein L1 26 238 5
G3DSA:3.30.190.20 IPR016094 Gene3D 177 244 4
SSF56808 IPR023674 SuperFamily 24 242 5
PTHR23105:SF21 hmmpanther 17 150 1
PTHR23105 hmmpanther 17 150 9

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.10 Da
Charge 24.50
Isoelectric point 10.43
Molecular weight 32.40 kDa
Number of residues 284
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1958.54PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1056.49PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.41PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
srs2ATP-dependent DNA helicase, UvrD subfamily Positive GeneticPMID:18818364
rrp2ATP-dependent DNA helicase (predicted) Negative GeneticPMID:22681890
SPAC3H8.02sec14 cytosolic factor family phosphatidylinositol transporter (predicted) Negative GeneticPMID:22681890
SPCC584.03cRan GTP-binding protein (predicted) Negative GeneticPMID:22681890
gpd1glycerol-3-phosphate dehydrogenase Gpd1 Negative GeneticPMID:22681890
SPBP8B7.10cU3 snoRNP-associated protein Utp16 (predicted) Negative GeneticPMID:22681890
get1GET complex subunit Get1 (predicted) Negative GeneticPMID:22681890
Negative GeneticPMID:18818364
vps71Swr1 complex subunit Vps71 Positive GeneticPMID:18818364
mug51variant protein kinase 19 family protein Negative GeneticPMID:22681890
spn1septin Spn1 Positive GeneticPMID:18818364
SPCC550.03cSki complex RNA helicase Ski2 (predicted) Negative GeneticPMID:22681890
fml1ATP-dependent 3' to 5' DNA helicase, FANCM ortholog Fml1 Positive GeneticPMID:18818364
gcd10tRNA (m1A) methyltransferase, translation initiation factor eIF-3 gamma subunit Gcd10 (predicted) Negative GeneticPMID:22681890
hrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Negative GeneticPMID:22681890
swd1Set1C complex subunit Swd1 Positive GeneticPMID:22681890
rad26ATRIP, ATR checkpoint kinase regulatory subunit Rad26 Positive GeneticPMID:18818364
SPCC126.13chistone deacetylase complex subunit, SAP128 family (predicted) Positive GeneticPMID:18818364
pac10prefoldin subunit 3 Pac10 (predicted) Negative GeneticPMID:22681890
pnk1DNA kinase/phosphatase Pnk1 Negative GeneticPMID:18818364
SPAC19B12.06crhomboid family protease Positive GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
mlo3RNA binding protein Mlo3 Affinity Capture-MSPMID:21436456
Contact Curators
External References
Database Identifier Description
NBRP SPCC306.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC306.07c Retrieval of eukaryotic orthologs
BioGrid SPCC306.07c BioGRID Interaction Datasets
Bähler Lab SPCC306.07c Cell Cycle Expression Profile
Bähler Lab SPCC306.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC306.07c Pheromone response/mating expression profiles
Bähler Lab SPCC306.07c Environmental stress expression profiles
Bähler Lab SPCC306.07c Bähler Lab Transcriptome Viewer
Cyclebase SPCC306.07c Cell Cycle Data
PInt SPCC306.07c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC306.07c Entrez Gene
EntrezGene2538926U3 snoRNP-associated protein Cic1/Utp30 family
WikiGene2538926U3 snoRNP-associated protein Cic1/Utp30 family
SPD / RIKEN17/17H06Orfeome Localization Data
UniProtKB/SwissProtQ9Y7R7Putative ribosome biogenesis protein C306.07c
ModBaseQ9Y7R7Database of comparative protein structure models
Pfam Protein DomainsQ9Y7R7Pfam Domain Arrangement
RefSeq PeptideNP_587815U3 snoRNP-associated protein Cic1/Utp30 family
RefSeq mRNANM_001022808972h- U3 snoRNP-associated protein Cic1/Utp30 family (SPCC306.07c), mRNA
European Nucleotide ArchiveCAB41655ENA Protein Mapping
UniParcUPI0000069F7DUniProt Archive

Literature for SPCC306.07c
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013