wtf8 (SPCC306.10)

Gene Standard Namewtf8 ChromosomeIII
Systematic IDSPCC306.10 Gene Start427445
Synonymswtf3-pseudo Gene End428763
Productwtf element Wtf8 Gene Length1319
Feature Typeprotein coding CDS Start427445
Name Description CDS End428763
Characterisation Statusfission_yeast_specific_family CDS Length1319

Ensembl Gene Location
  1. SPCC306.07c
  2. SPCC306.08c
  3. cap1
  4. wtf8
  5. SPCC306.11
  6. alp16
  7. SPNCRNA.1138
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0000324fungal-type vacuoleIDAPMID:16823372
GO:0005737cytoplasmIDAPMID:16823372
GO:0005774vacuolar membraneIEASL-0271GO_REF:0000039
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1427445427583
2427752427997
3428072428290
4428336428527
5428568428630
6428681428763
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF03303 IPR004982 Pfam WTF protein 1 229 20
TMhelix TMHMM 212 229 955
TMhelix TMHMM 180 202 955
TMhelix TMHMM 73 95 955
TMhelix TMHMM 154 173 955
TMhelix TMHMM 107 129 955
PTHR31754:SF0 hmmpanther 2 313 14
PTHR31754 hmmpanther 2 313 17

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0002829wtf elementPMID:12952871Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002829

Protein Properties

Ave. residue weight 112.88 Da
Charge -5.00
Isoelectric point 5.17
Molecular weight 35.33 kDa
Number of residues 313
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide0.24PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.22PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated
non-consensus branch site
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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
SPAC1952.06cspliceosomal complex subunit (predicted) Positive GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
dad1DASH complex subunit Dad1 Negative GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Positive GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPCC306.10 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC306.10 Retrieval of eukaryotic orthologs
BioGrid SPCC306.10 BioGRID Interaction Datasets
Bähler Lab SPCC306.10 Cell Cycle Expression Profile
Bähler Lab SPCC306.10 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC306.10 Pheromone response/mating expression profiles
Bähler Lab SPCC306.10 Environmental stress expression profiles
Bähler Lab SPCC306.10 Bähler Lab Transcriptome Viewer
Cyclebase SPCC306.10 Cell Cycle Data
PInt SPCC306.10 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC306.10 Entrez Gene
Uniprot_genenameWTF8
SPD / RIKEN51/51D12Orfeome Localization Data
UniProtKB/SwissProtG2TRV0Uncharacterized protein wtf8
ModBaseG2TRV0Database of comparative protein structure models
Pfam Protein DomainsG2TRV0Pfam Domain Arrangement
European Nucleotide ArchiveCAO77685ENA Protein Mapping
UniParcUPI000228F3DFUniProt Archive

Literature for wtf8
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013