rpl1202 (SPCC31H12.04c)

Gene Standard Namerpl1202 ChromosomeIII
Systematic IDSPCC31H12.04c Gene Start628007
Synonymsrpl12, rpl12-2 Gene End627062
Product60S ribosomal protein L12.1/L12A Gene Length946
Feature Typeprotein coding CDS Start627804
Name Description CDS End627212
Characterisation Statuspublished CDS Length593

Ensembl Gene Location
  1. msy1
  2. mug73
  3. SPCC31H12.03c
  4. rpl1202
  5. sds21
  6. mug111
  7. sec231
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrpl1202delta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0000027ribosomal large subunit assemblyISOSGD:S000000780GO_REF:0000024
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000000780GO_REF:0000024
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005829cytosolIDAPMID:16823372
GO:0022625cytosolic large ribosomal subunitISOSGD:S000000780GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1628007627793
2627697627062

References

Region Start End Reference
five_prime_UTR628007627805PMID:21511999
five_prime_UTR628007627805PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF03946 IPR020784 Pfam Ribosomal protein L11 15 69 3
PF00298 IPR020783 Pfam Ribosomal protein L11 74 143 3
SM00649 IPR000911 SMART Ribosomal protein L11 13 144 3
PS00359 IPR020785 Prosite Patterns Ribosomal protein L11 130 145 2
G3DSA:3.30.1550.10 IPR020784 Gene3D 1 80 3
G3DSA:1.10.10.250 IPR020783 Gene3D 81 144 3
SSF54747 IPR020784 SuperFamily 1 86 3
SSF46906 IPR020783 SuperFamily 75 148 3
PTHR11661 IPR000911 hmmpanther Ribosomal protein L11 1 165 3

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00427methylated residuePMID:18195021

Protein Properties

Ave. residue weight 107.07 Da
Charge 6.00
Isoelectric point 10.08
Molecular weight 17.67 kDa
Number of residues 165
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide7.9PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide68PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
dsc2Golgi Dsc E3 ligase complex subunit Dsc2 Negative GeneticPMID:21504829
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Negative GeneticPMID:21504829
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Affinity Capture-MSPMID:21504829
zfs1CCCH tandem zinc finger protein, human Tristetraprolin homolog Zfs1, involved in mRNA catabolism Two-hybridPMID:19682301
sds23PP2A-type phosphatase inhibitor Sds23/Moc1 Two-hybridPMID:19682301
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
moc3transcription factor Moc3 Two-hybridPMID:19682301
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External References
Database Identifier Description
NBRP SPCC31H12.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC31H12.04c Retrieval of eukaryotic orthologs
BioGrid SPCC31H12.04c BioGRID Interaction Datasets
Bähler Lab SPCC31H12.04c Cell Cycle Expression Profile
Bähler Lab SPCC31H12.04c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC31H12.04c Pheromone response/mating expression profiles
Bähler Lab SPCC31H12.04c Environmental stress expression profiles
Bähler Lab SPCC31H12.04c Bähler Lab Transcriptome Viewer
Cyclebase SPCC31H12.04c Cell Cycle Data
PInt SPCC31H12.04c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC31H12.04c Entrez Gene
EntrezGene253901060S ribosomal protein L12.1/L12A
EntrezGene253918660S ribosomal protein L12.1/L12A
Uniprot_genenameRPL1201
WikiGene253901060S ribosomal protein L12.1/L12A
WikiGene253918660S ribosomal protein L12.1/L12A
SPD / RIKEN06/06E04Orfeome Localization Data
UniProtKB/SwissProtO7500060S ribosomal protein L12
ModBaseO75000Database of comparative protein structure models
Pfam Protein DomainsO75000Pfam Domain Arrangement
RefSeq PeptideNP_58789760S ribosomal protein L12.1/L12A
RefSeq mRNANM_001022889972h- 60S ribosomal protein L12.1/L12A (rpl1202), mRNA
European Nucleotide ArchiveCAA20752ENA Protein Mapping
European Nucleotide ArchiveCAA21221ENA Protein Mapping
UniParcUPI0000133BB0UniProt Archive

Literature for rpl1202
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013