SPCC330.06c

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC330.06c Gene Start119002
Synonyms Gene End118222
Productthioredoxin peroxidase (predicted) Gene Length781
Feature Typeprotein coding CDS Start118893
Name Description CDS End118423
Characterisation Statusbiological_role_inferred CDS Length471

Ensembl Gene Location
  1. SPNCRNA.1108
  2. mug135
  3. SPNCRNA.1109
  4. SPCTRNAGLY.10
  5. tam14
  6. SPNCRNA.129
  7. ura4
  8. new25
  9. SPCC330.06c
  10. SPNCRNA.1110
  11. SPNCRNA.1111
  12. SPNCRNA.455
  13. SPCC330.07c
  14. alg11
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001491viable vegetative cellMicroscopySPCC330.06cdelta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0008379thioredoxin peroxidase activityISOSGD:S000004099GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0019430removal of superoxide radicalsICGO:0004602GO_REF:0000001
GO:0033554cellular response to stressICGO:0008379GO_REF:0000001
GO:0034599cellular response to oxidative stressISOSGD:S000004099GO_REF:0000024
GO:0042744hydrogen peroxide catabolic processICGO:0008379GO_REF:0000001
GO:0045454cell redox homeostasisISOSGD:S000004099GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005737cytoplasmISOSGD:S000004099GO_REF:0000024
GO:0005777peroxisomeIEASL-0204GO_REF:0000039
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1119002118222
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF08534 IPR013740 Pfam Redoxin 4 153 1
PS51352 IPR012336 Prosite Profiles Thioredoxin-like fold 2 156 12
G3DSA:3.40.30.10 IPR012336 Gene3D 1 156 36
SSF52833 IPR012336 SuperFamily 1 155 38
PTHR10430 hmmpanther 1 156 1
PTHR10430:SF4 hmmpanther 1 156 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000261thioredoxin familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000261

Protein Properties

Ave. residue weight 106.89 Da
Charge -2.50
Isoelectric point 4.93
Molecular weight 16.67 kDa
Number of residues 156
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide266373.74PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide186298.86PMID:23101633
RNA levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide37PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide5.7PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
rga2Rho-type GTPase activating protein Rga2 (predicted) Positive GeneticPMID:22681890
sod1superoxide dismutase Sod1 Positive GeneticPMID:22681890
sdh4TIM22 inner membrane protein import complex anchor subunit Tim18 Positive GeneticPMID:22681890
SPBC11B10.08WW domain containing conserved fungal protein Positive GeneticPMID:22681890
rhp14XP-A family homolog Rhp14 Positive GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
cph2Clr6 histone deacetylase associated PHD protein-2 Cph2 Positive GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPCC330.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC330.06c Retrieval of eukaryotic orthologs
BioGrid SPCC330.06c BioGRID Interaction Datasets
Bähler Lab SPCC330.06c Cell Cycle Expression Profile
Bähler Lab SPCC330.06c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC330.06c Pheromone response/mating expression profiles
Bähler Lab SPCC330.06c Environmental stress expression profiles
Bähler Lab SPCC330.06c Bähler Lab Transcriptome Viewer
Cyclebase SPCC330.06c Cell Cycle Data
PInt SPCC330.06c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC330.06c Entrez Gene
SPD / RIKEN04/04C12Orfeome Localization Data
EntrezGene2538981thioredoxin peroxidase
Uniprot_genenamePMP20
WikiGene2538981thioredoxin peroxidase
UniProtKB/SwissProtO14313Putative peroxiredoxin pmp20
ModBaseO14313Database of comparative protein structure models
Pfam Protein DomainsO14313Pfam Domain Arrangement
RefSeq PeptideNP_587706thioredoxin peroxidase
RefSeq mRNANM_001022701972h- thioredoxin peroxidase (SPCC330.06c), mRNA
European Nucleotide ArchiveCAA05528ENA Protein Mapping
European Nucleotide ArchiveCAA20911ENA Protein Mapping
SPD / RIKEN04/04C12Orfeome Localization Data

Literature for SPCC330.06c
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013