SPCC338.06c


Gene Standard NameUnassigned Characterisation Statusbiological role inferred
Systematic IDSPCC338.06c Feature Typeprotein coding
Synonyms Name Description
Productheat shock protein Hsp20 family (predicted) Product Size139aa, 15.81 kDa
Genomic Location Chromosome III, 1364892-1366139 (1248nt); CDS:1365222-1365641 (420nt)

Ensembl Gene Location
GO Biological Process

GO Slim Terms

protein folding


Term NameCount
chaperone-mediated protein folding10
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrion752
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationSPCC338.06cΔ3850

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologySPCC338.06cΔ3102
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons1364892..1366139
mRNA1364892..1366139
5' UTR1364892..1365221PMID:21511999
CDS1365222..1365641
3' UTR1365642..1366139PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00011 Pfam IPR002068 Alpha crystallin/Hsp20 domain 38 139 2
PS01031 Prosite Profiles IPR002068 Alpha crystallin/Hsp20 domain 37 126 2
PTHR11527 HMMPANTHER IPR031107 Small heat shock protein HSP20 2 139 2
PTHR11527:SF110 HMMPANTHER 2 139 1
2.60.40.790 Gene3D IPR008978 HSP20-like chaperone 10 135 6
SSF49764 SuperFamily IPR008978 HSP20-like chaperone 7 131 6

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.72 Da
Charge -2.00
Codon Adaptation Index 0.45
Isoelectric point 5.31
Molecular weight 15.81 kDa
Number of residues 139
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for SPCC338.06c

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
9592during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
9500during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
12802during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
11938during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
10412during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
4795.31during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
9468.27during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3.4during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.89during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Disease Association
DescriptionQualifierReferenceCount
neurological disorders PMID:23293578100
Charcot-Marie-Tooth disease PMID:232935789
Miscellaneous Functional Group
DescriptionQualifierReferenceCount
chaperoneInferred from Sequence or Structural Similarity12
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4607
conserved in eukaryotes4517
conserved in metazoa3427
conserved in vertebrates3402
conserved in eukaryotes only2502
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPCC338.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC338.06c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC338.06c BioGRID Interaction Datasets
Expression Viewer SPCC338.06c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC338.06c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC338.06c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC338.06c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC338.06c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC338.06c Transcriptome Viewer (Bähler Lab)
GEO SPCC338.06c GEO profiles
PInt SPCC338.06c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC338.06c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC338.06c Fission yeast phenotypic data & analysis
Cyclebase SPCC338.06c.1 Cell Cycle Data
SPD / RIKEN03/03D05Orfeome Localization Data
UniProtKB/SwissProtO74984Heat shock protein homolog C338.06c
ModBaseO74984Database of comparative protein structure models
STRINGO74984Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_588161heat shock protein Hsp20 family (predicted)
RefSeq mRNANM_001023150972h- heat shock protein Hsp20 family (predicted) (SPCC338.06c), mRNA
European Nucleotide ArchiveCAA19337.1ENA Protein Mapping
UniParcUPI000006BE5DUniProt Archive

Literature for SPCC338.06c

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016