SPCC338.06c


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPCC338.06c Feature Typeprotein coding
Synonyms Name Description
Productheat shock protein Hsp20 family (predicted) Product Size139aa, 15.81 kDa
Genomic Location Chromosome III, 1364892-1366139 (1248nt); CDS:1365222-1365641 (420nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0034605cellular response to heatIEPPMID:1252943836
GO:0061077chaperone-mediated protein foldingNASGO_REF:000000111
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005739mitochondrionIDAPMID:16823372758
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPCC338.06cΔNullPECO:0000005, PECO:0000137PMID:236978063760
MicroscopySPCC338.06cΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3086
penetrance FYPO_EXT:0000001MicroscopySPCC338.06cΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
113648921366139

UTRs

Region Coordinates Reference
five_prime_UTR1364892..1365221PMID:21511999
three_prime_UTR1365642..1366139PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00011 Pfam IPR002068 Alpha crystallin/Hsp20 domain 38 139 2
PS01031 Prosite Profiles IPR002068 Alpha crystallin/Hsp20 domain 37 126 2
PTHR11527 HMMPANTHER 1 139 2
2.60.40.790 Gene3D IPR008978 HSP20-like chaperone 10 135 5
SSF49764 SuperFamily IPR008978 HSP20-like chaperone 7 131 6

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.72 Da
Charge -2.00
Isoelectric point 5.31
Molecular weight 15.81 kDa
Number of residues 139
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
4795.31during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
9468.27during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
9500during GO:0000084PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
10412during GO:0072690PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
9592during GO:0000080PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
11938during GO:0000087PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
12802during GO:0000085PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
3.4during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
0.89during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Miscellaneous Functional Group
DescriptionQualifierReferenceCount
chaperoneInferred from Sequence or Structural Similarity12
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4569
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3393
conserved in eukaryotes only2487
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPCC338.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC338.06c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC338.06c BioGRID Interaction Datasets
Expression Viewer SPCC338.06c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC338.06c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC338.06c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC338.06c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC338.06c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC338.06c Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC338.06c Cell Cycle Data
GEO SPCC338.06c GEO profiles
PInt SPCC338.06c Protein-Protein Interaction Predictor (Bähler Lab)
SPD / RIKEN03/03D05Orfeome Localization Data
WikiGene2538739heat shock protein Hsp20 family
EntrezGene2538739heat shock protein Hsp20 family
UniProtKB/SwissProtO74984Heat shock protein homolog C338.06c
ModBaseO74984Database of comparative protein structure models
STRINGO74984Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_588161heat shock protein Hsp20 family
RefSeq mRNANM_001023150972h- heat shock protein Hsp20 family (SPCC338.06c), mRNA
European Nucleotide ArchiveCAA19337ENA Protein Mapping
European Nucleotide ArchiveCAA19337.1ENA Protein Mapping
UniParcUPI000006BE5DUniProt Archive

Literature for SPCC338.06c

Search: Europe PMC or PubMed

Release Version: PomBase:22_44 - 08 Jul 2014