SPCC338.06c


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPCC338.06c Feature Typeprotein coding
Synonyms Name Description
Productheat shock protein Hsp20 family (predicted) Product Size139aa, 15.81 kDa
Genomic Location Chromosome III, 1364892-1366139 (1248nt); CDS:1365222-1365641 (420nt)

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0034605cellular response to heatIEPPMID:1252943843
GO:0061077chaperone-mediated protein foldingNASGO_REF:000000111
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005739mitochondrionIDAPMID:16823372756
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPCC338.06cΔNullPMID:204732893755
MicroscopySPCC338.06cΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphologyMicroscopySPCC338.06cΔNullPECO:0000005, PECO:0000137PMID:236978063078
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
113648921366139

UTRs

Region Start End Reference
three_prime_UTR13656421366139PMID:21511999
five_prime_UTR13648921365221PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00011 Pfam IPR002068 Alpha crystallin/Hsp20 domain 38 139 2
PS01031 Prosite Profiles IPR002068 Alpha crystallin/Hsp20 domain 37 126 2
PTHR11527 HMMPANTHER 3 139 2
G3DSA:2.60.40.790 Gene3D 10 135 5
SSF49764 SuperFamily IPR008978 7 131 6
Low complexity (SEG) seg 40 51

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.72 Da
Charge -2.00
Isoelectric point 5.31
Molecular weight 15.81 kDa
Number of residues 139
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
4795.31during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
9468.27during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.89during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
3.4during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Miscellaneous Functional Group
DescriptionQualifierReferenceCount
chaperoneInferred from Sequence or Structural Similarity12
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4564
conserved in eukaryotes4482
conserved in metazoa3419
conserved in vertebrates3394
conserved in eukaryotes only2485
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPCC338.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC338.06c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC338.06c BioGRID Interaction Datasets
Expression Viewer SPCC338.06c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC338.06c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC338.06c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC338.06c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC338.06c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC338.06c Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC338.06c Cell Cycle Data
GEO SPCC338.06c GEO profiles
PInt SPCC338.06c Protein-Protein Interaction Predictor (Bähler Lab)
SPD / RIKEN03/03D05Orfeome Localization Data
WikiGene2538739heat shock protein Hsp20 family
EntrezGene2538739heat shock protein Hsp20 family
UniProtKB/SwissProtO74984Heat shock protein homolog C338.06c
ModBaseO74984Database of comparative protein structure models
StringO74984Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_588161heat shock protein Hsp20 family
RefSeq mRNANM_001023150972h- heat shock protein Hsp20 family (SPCC338.06c), mRNA
European Nucleotide ArchiveCAA19337ENA Protein Mapping
UniParcUPI000006BE5DUniProt Archive

Literature for SPCC338.06c

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014