swp1 (SPCC553.06)


Gene Standard Nameswp1 Characterisation Statusbiological_role_inferred
Systematic IDSPCC553.06 Feature Typeprotein coding
Synonyms Name Description
Productoligosaccharyltransferase delta subunit Swp1 (predicted) Product Size271aa, 29.33 kDa
Genomic Location Chromosome III, 296631-295229 (1403nt); CDS:296487-295482 (1006nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
dolichyl-diphosphooligosaccharide-protein glycotransferase activity8
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
protein N-linked glycosylation32
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
endoplasmic reticulum596
Annotation ExtensionEvidenceWith/FromReference
integral component of membrane1018
Annotation ExtensionEvidenceWith/FromReference
oligosaccharyltransferase complex8
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Population Phenotype

Term NameAlleleExpressionCount
inviable vegetative cell populationswp1ΔNull1438

Cell Phenotype

Term NameAlleleExpressionCount
inviable after spore germination, single cell division, abnormal cell shapeswp1ΔNull48
inviable sporeswp1ΔNull472
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons296631..296357, 296266..296068, 295967..295229
mRNA296631..295229
5' UTR296631..296488PMID:21511999
CDS296487..296357, 296266..296068, 295967..295482
3' UTR295481..295229PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF05817 Pfam IPR008814 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1 30 253 1
TMhelix TMHMM 229 251 959
TMhelix TMHMM 186 208 959
PTHR12640 HMMPANTHER 1 267 1
PTHR12640:SF0 HMMPANTHER IPR008814 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1 1 267 1
SignalP-noTM signalp 1 18 212

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReferenceCount
SO:0000418signal_peptide279
SO:0001812transmembrane_helix465

Protein Properties

Ave. residue weight 108.23 Da
Charge -2.50
Isoelectric point 5.59
Molecular weight 29.33 kDa
Number of residues 271
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
39568during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
42598during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
41269during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
3551.81during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
9363.19during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
10during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
1.5during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4603
conserved in eukaryotes4514
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2501
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured byred5human ZC3H3 homolog Affinity Capture-MSPMID:24713849
External References
Database Identifier Description
NBRP SPCC553.06 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC553.06 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC553.06 BioGRID Interaction Datasets
Expression Viewer SPCC553.06 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC553.06 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC553.06 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC553.06 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC553.06 Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC553.06 Transcriptome Viewer (Bähler Lab)
GEO SPCC553.06 GEO profiles
PInt SPCC553.06 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC553.06 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC553.06 Fission yeast phenotypic data & analysis
Cyclebase SPCC553.06.1 Cell Cycle Data
SPD / RIKEN14/14H01Orfeome Localization Data
UniProtKB/SwissProtO74943Uncharacterized protein C553.06
ModBaseO74943Database of comparative protein structure models
STRINGO74943Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_587768oligosaccharyltransferase delta subunit Swp1 (predicted)
RefSeq mRNANM_001022761972h- oligosaccharyltransferase delta subunit Swp1 (predicted) (swp1), mRNA
European Nucleotide ArchiveCAA19258.1ENA Protein Mapping
KEGG_Enzyme00510+2.4.99.18N-Glycan biosynthesis
KEGG_Enzyme00513+2.4.99.18Various types of N-glycan biosynthesis
UniParcUPI000006B04EUniProt Archive
UniPathwayUPA00378Protein modification; protein glycosylation

Literature for swp1

Search: Europe PMC or PubMed

Release Version: PomBase:26_53 - 27 May 2015