SPCC5E4.10c


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPCC5E4.10c Feature Typeprotein coding
Synonyms Name Description
Producthuman leukocyte receptor 1 ortholog Product Size198aa, 23.91 kDa
Genomic Location Chromosome III, 652710-650897 (1814nt); CDS:652455-651622 (834nt)

Ensembl Gene Location
GO Cellular Component
Term NameCount
nucleolus360
Annotation ExtensionEvidenceWith/FromReference
nucleus2696
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
viable vegetative cell populationSPCC5E4.10cΔNull3792

Cell Phenotype

Term NameAlleleExpressionCount
viable vegetative cell with normal cell morphologySPCC5E4.10cΔNull3092
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons652710..652419, 652371..652280, 652225..652115, 652045..651973, 651905..650897
mRNA652710..650897
5' UTR652710..652456PMID:21511999
CDS652455..652419, 652371..652280, 652225..652115, 652045..651973, 651905..651622
3' UTR651621..650897PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PTHR22093 HMMPANTHER 2 195 1
Coil ncoils Rabaptin coiled-coil domain 21 56 968

View domain organization at Pfam

Protein Properties

Ave. residue weight 120.78 Da
Charge 16.50
Isoelectric point 10.40
Molecular weight 23.91 kDa
Number of residues 198
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.4during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
0.76during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated432
Species Distribution
DescriptionQualifierReferenceCount
no apparent S. cerevisiae ortholog598
predominantly single copy (one to one)3092
conserved in fungi4604
conserved in metazoa3430
conserved in vertebrates3405
conserved in eukaryotes only2502
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bycwf2RNA-binding protein Cwf2 Affinity Capture-MSPMID:21386897
affinity captured byprp17splicing factor Prp17 Affinity Capture-MSPMID:21386897
affinity captured byprp19ubiquitin-protein ligase E4 Prp19 Affinity Capture-MSPMID:21386897
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withcut2securin, sister chromatid separation inhibitor Negative GeneticPMID:22681890
negative genetic interaction withhrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Negative GeneticPMID:22681890
negative genetic interaction withSPBC11B10.08WW domain containing conserved fungal protein Negative GeneticPMID:22681890
negative genetic interaction withSPBC713.07cvacuolar polyphosphatase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withvps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPCC5E4.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC5E4.10c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC5E4.10c BioGRID Interaction Datasets
Expression Viewer SPCC5E4.10c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC5E4.10c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC5E4.10c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC5E4.10c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC5E4.10c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC5E4.10c Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC5E4.10c Cell Cycle Data
GEO SPCC5E4.10c GEO profiles
PInt SPCC5E4.10c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC5E4.10c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC5E4.10c Fission yeast phenotypic data & analysis
SPD / RIKEN02/02F05Orfeome Localization Data
UniProtKB/SwissProtQ9P7Z6Uncharacterized protein C5E4.10c
ModBaseQ9P7Z6Database of comparative protein structure models
STRINGQ9P7Z6Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_587905hypothetical protein SPCC5E4.10c
RefSeq mRNANM_001022897972h- hypothetical protein (SPCC5E4.10c), mRNA
European Nucleotide ArchiveCAB71863.2ENA Protein Mapping
UniParcUPI000228F4B2UniProt Archive

Literature for SPCC5E4.10c

Search: Europe PMC or PubMed

Release Version: PomBase:25_50 - 10 Mar 2015