SPCC5E4.10c

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC5E4.10c Gene Start652710
Synonyms Gene End650897
Producthuman leukocyte receptor 1 ortholog Gene Length1814
Feature Typeprotein coding CDS Start652455
Name Description CDS End651622
Characterisation Statusconserved_unknown CDS Length834

Ensembl Gene Location
  1. cut1
  2. SPCC5E4.05c
  3. SPNCRNA.1149
  4. SPCC5E4.10c
  5. SPNCRNA.1150
  6. smc6
  7. rpl2802
  8. SPCC16C4.19
  9. SPNCRNA.1151
  10. sif2
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPCC5E4.10cdelta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005730nucleolusIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1652710652419
2652371652280
3652225652115
4652045651973
5651905650897

References

Region Start End Reference
three_prime_UTR651621650897PMID:21511999
five_prime_UTR652710652456PMID:21511999
three_prime_UTR651621650897PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
Coil ncoils Rabaptin coiled-coil domain 21 56 974

View domain organization at Pfam

Protein Properties

Ave. residue weight 120.78 Da
Charge 16.50
Isoelectric point 10.40
Molecular weight 23.91 kDa
Number of residues 198
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.4PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.76PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
hrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Negative GeneticPMID:22681890
SPBC11B10.08WW domain containing conserved fungal protein Negative GeneticPMID:22681890
SPBC713.07cvacuolar polyphosphatase (predicted) Negative GeneticPMID:22681890
cut2securin, sister chromatid separation inhibitor Negative GeneticPMID:22681890
vps35retromer complex subunit Vps35 Negative GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
prp19ubiquitin-protein ligase E4 Affinity Capture-MSPMID:21386897
prp17splicing factor Prp17 Affinity Capture-MSPMID:21386897
cwf2RNA-binding protein Cwf2 Affinity Capture-MSPMID:21386897
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External References
Database Identifier Description
NBRP SPCC5E4.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC5E4.10c Retrieval of eukaryotic orthologs
BioGrid SPCC5E4.10c BioGRID Interaction Datasets
Bähler Lab SPCC5E4.10c Cell Cycle Expression Profile
Bähler Lab SPCC5E4.10c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC5E4.10c Pheromone response/mating expression profiles
Bähler Lab SPCC5E4.10c Environmental stress expression profiles
Bähler Lab SPCC5E4.10c Bähler Lab Transcriptome Viewer
Cyclebase SPCC5E4.10c Cell Cycle Data
PInt SPCC5E4.10c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC5E4.10c Entrez Gene
EntrezGene2539376sequence orphan
WikiGene2539376sequence orphan
SPD / RIKEN02/02F05Orfeome Localization Data
UniProtKB/SwissProtQ9P7Z6Uncharacterized protein C5E4.10c
ModBaseQ9P7Z6Database of comparative protein structure models
Pfam Protein DomainsQ9P7Z6Pfam Domain Arrangement
RefSeq PeptideNP_587905sequence orphan
RefSeq mRNANM_001022897972h- sequence orphan (SPCC5E4.10c), mRNA
European Nucleotide ArchiveCAB71863ENA Protein Mapping
UniParcUPI000228F4B2UniProt Archive

Literature for SPCC5E4.10c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013