SPCC613.03


Gene Standard NameUnassigned Characterisation Statusconserved_unknown
Systematic IDSPCC613.03 Feature Typeprotein coding
Synonyms Name Description
Productconserved fungal protein Product Size189aa, 22.48 kDa
Genomic Location Chromosome III, 85128-88460 (3333nt); CDS:85363-85932 (570nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005509calcium ion bindingIEAIPR002048GO_REF:000000252
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005794Golgi apparatusIDAPMID:16823372355
GO:0005796Golgi lumenIEASL-0133GO_REF:00000392
GO:0005737cytoplasmISOSGD:S000004240GO_REF:00000244198
GO:0005783endoplasmic reticulumIDAPMID:16823372594
GO:0005788endoplasmic reticulum lumenIEASL-0096GO_REF:000003913
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000086sensitive to tacrolimusCell growth assaySPCC613.03ΔNullPECO:0000201, PECO:0000005, PECO:0000142PMID:2185027179
expressivity FYPO_EXT:0000002
FYPO:0002060viable vegetative cell populationMicroscopySPCC613.03ΔNullPMID:204732893755
MicroscopySPCC613.03ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphologyMicroscopySPCC613.03ΔNullPECO:0000005, PECO:0000137PMID:236978063078
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
18512888460

UTRs

Region Start End Reference
five_prime_UTR8512885362PMID:21511999
three_prime_UTR8593388460PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PS00018 Prosite Patterns IPR018247 EF-hand domain 87 99 12
PS50222 Prosite Profiles IPR002048 EF-hand domain 74 109 20
PTHR19237 HMMPANTHER 22 186 1
PTHR19237:SF14 HMMPANTHER 22 186 1
G3DSA:1.10.238.10 Gene3D IPR011992 26 105 20
SSF47473 SuperFamily 24 104 21
Low complexity (SEG) seg 112 131
SignalP-noTM signalp 1 20 212

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000276EF handTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000276

Sequence Ontology

Term IDTerm NameReferenceCount
SO:0000418signal_peptide278

Protein Properties

Ave. residue weight 118.92 Da
Charge -6.00
Isoelectric point 5.68
Molecular weight 22.48 kDa
Number of residues 189
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
4972.23during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
6858.31during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.57during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
3during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3080
conserved in fungi only603
conserved in fungi4564
conserved in eukaryotes4482
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
ace2transcription factor Ace2 Positive GeneticPMID:22681890
swc5Swr1 complex subunit Swc5 Negative GeneticPMID:22681890
psy2protein phosphatase PP4 complex subunit Psy2 (predicted) Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
rpl160160S ribosomal protein L13/L16 (predicted) Positive GeneticPMID:22681890
cph2Clr6 histone deacetylase associated PHD protein-2 Cph2 Negative GeneticPMID:22681890
sts5RNB-like protein Negative GeneticPMID:22681890
atg6beclin family protein, involved in autophagy Negative GeneticPMID:22681890
ask1DASH complex subunit Ask1 Negative GeneticPMID:22681890
pht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Negative GeneticPMID:22681890
dad2DASH complex subunit Dad2 Negative GeneticPMID:22681890
pof9F-box protein Pof9 Positive GeneticPMID:22681890
myp2myosin II heavy chain Myo3 Negative GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
chk1Chk1 protein kinase Two-hybridPMID:17502373
External References
Database Identifier Description
NBRP SPCC613.03 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC613.03 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC613.03 BioGRID Interaction Datasets
Expression Viewer SPCC613.03 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC613.03 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC613.03 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC613.03 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC613.03 Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC613.03 Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC613.03 Cell Cycle Data
GEO SPCC613.03 GEO profiles
PInt SPCC613.03 Protein-Protein Interaction Predictor (Bähler Lab)
SPD / RIKEN06/06A08Orfeome Localization Data
WikiGene2539402conserved fungal protein
EntrezGene2539402conserved fungal protein
UniProtKB/SwissProtO74903Uncharacterized calcium-binding protein C613.03
ModBaseO74903Database of comparative protein structure models
StringO74903Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_587691conserved fungal protein
RefSeq mRNANM_001022686972h- conserved fungal protein (SPCC613.03), mRNA
European Nucleotide ArchiveCAA21055ENA Protein Mapping
UniParcUPI000006AF6CUniProt Archive

Literature for SPCC613.03

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014