SPCC613.03

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC613.03 Gene Start85128
Synonyms Gene End88460
Productconserved fungal protein Gene Length3333
Feature Typeprotein coding CDS Start85363
Name Description CDS End85932
Characterisation Statusconserved_unknown CDS Length570

Ensembl Gene Location
  1. SPCC757.13
  2. SPNCRNA.1102
  3. SPCC613.01
  4. SPCC613.02
  5. prl22
  6. SPCC613.03
  7. rng3
  8. rpl35
  9. SPNCRNA.1103
  10. rpl902
  11. SPCC613.07
  12. SPNCRNA.1104
  13. SPCC613.08
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001491viable vegetative cellMicroscopySPCC613.03delta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005509calcium ion bindingIEAIPR002048, IPR011992GO_REF:0000002
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmISOSGD:S000004240GO_REF:0000024
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0005788endoplasmic reticulum lumenIEASL-0096GO_REF:0000039
GO:0005794Golgi apparatusIDAPMID:16823372
GO:0005796Golgi lumenIEASL-0133GO_REF:0000039
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
18512888460

References

Region Start End Reference
three_prime_UTR8593388460PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PS50222 IPR018249 Prosite Profiles EF-hand domain 74 109 20
PS00018 IPR018247 Prosite Patterns EF-hand domain 87 99 12
G3DSA:1.10.238.10 IPR011992 Gene3D 26 105 20
SSF47473 SuperFamily 24 104 21
SignalP-noTM signalp 1 20 212

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000276EF handTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000276

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide

Protein Properties

Ave. residue weight 118.92 Da
Charge -6.00
Isoelectric point 5.68
Molecular weight 22.48 kDa
Number of residues 189
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide4972.23PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide6858.31PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.57PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
swc5Swr1 complex subunit Swc5 Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
cph2Clr6 histone deacetylase associated PHD protein-2 Cph2 Negative GeneticPMID:22681890
ace2transcription factor Ace2 Positive GeneticPMID:22681890
pof9F-box protein Pof9 Positive GeneticPMID:22681890
myp2myosin II heavy chain Myo3 Negative GeneticPMID:22681890
rpl160160S ribosomal protein L13/L16 (predicted) Positive GeneticPMID:22681890
sts5RNB-like protein Negative GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Negative GeneticPMID:22681890
ask1DASH complex subunit Ask1 Negative GeneticPMID:22681890
pht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:22681890
dad2DASH complex subunit Dad2 Negative GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
atg6beclin family protein, involved in autophagy Negative GeneticPMID:22681890
SPBC216.01cDNA damage response protein (predicted) Negative GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
chk1Chk1 protein kinase Two-hybridPMID:17502373
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External References
Database Identifier Description
NBRP SPCC613.03 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC613.03 Retrieval of eukaryotic orthologs
BioGrid SPCC613.03 BioGRID Interaction Datasets
Bähler Lab SPCC613.03 Cell Cycle Expression Profile
Bähler Lab SPCC613.03 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC613.03 Pheromone response/mating expression profiles
Bähler Lab SPCC613.03 Environmental stress expression profiles
Bähler Lab SPCC613.03 Bähler Lab Transcriptome Viewer
Cyclebase SPCC613.03 Cell Cycle Data
PInt SPCC613.03 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC613.03 Entrez Gene
SPD / RIKEN06/06A08Orfeome Localization Data
WikiGene2539402conserved fungal protein
EntrezGene2539402conserved fungal protein
UniProtKB/SwissProtO74903Uncharacterized calcium-binding protein C613.03
ModBaseO74903Database of comparative protein structure models
Pfam Protein DomainsO74903Pfam Domain Arrangement
RefSeq PeptideNP_587691conserved fungal protein
RefSeq mRNANM_001022686972h- conserved fungal protein (SPCC613.03), mRNA
European Nucleotide ArchiveCAA21055ENA Protein Mapping
SPD / RIKEN06/06A08Orfeome Localization Data

Literature for SPCC613.03
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013