SPCC622.11

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC622.11 Gene Start1417100
Synonyms Gene End1419224
ProductLMBR1-like membrane protein Gene Length2125
Feature Typeprotein coding CDS Start1417100
Name Description CDS End1418983
Characterisation Statusconserved_unknown CDS Length1884

Ensembl Gene Location
  1. SPNCRNA.1194
  2. hta1
  3. htb1
  4. SPCC622.10c
  5. SPCC622.11
  6. gdh1
  7. tti1
  8. SPNCRNA.1195
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPCC622.11delta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0000139Golgi membraneIEASL-0134GO_REF:0000039
GO:0005737cytoplasmIDAPMID:16823372
GO:0005794Golgi apparatusIDAPMID:16823372
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
114171001417438
214176341419224

References

Region Start End Reference
three_prime_UTR14189841419224PMID:21511999
three_prime_UTR14189841419224PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04791 IPR006876 Pfam LMBR1-like membrane protein 61 504 1
TMhelix TMHMM 90 109 955
TMhelix TMHMM 381 403 955
TMhelix TMHMM 198 220 955
TMhelix TMHMM 55 77 955
TMhelix TMHMM 23 45 955
TMhelix TMHMM 161 183 955
TMhelix TMHMM 344 366 955
TMhelix TMHMM 119 141 955
PTHR21355 hmmpanther 57 508 1

View domain organization at Pfam

Protein Modifications (PSI-MOD)

Term IDTerm NameEvidenceResidueReference
MOD:00696phosphorylated residuePMID:19547744

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 115.35 Da
Charge 18.00
Isoelectric point 9.41
Molecular weight 64.83 kDa
Number of residues 562
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1856.76PMID:23101633
experimental evidencePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.57PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide0.94PMID:23101633
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPCC622.11 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC622.11 Retrieval of eukaryotic orthologs
BioGrid SPCC622.11 BioGRID Interaction Datasets
Bähler Lab SPCC622.11 Cell Cycle Expression Profile
Bähler Lab SPCC622.11 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC622.11 Pheromone response/mating expression profiles
Bähler Lab SPCC622.11 Environmental stress expression profiles
Bähler Lab SPCC622.11 Bähler Lab Transcriptome Viewer
Cyclebase SPCC622.11 Cell Cycle Data
PInt SPCC622.11 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC622.11 Entrez Gene
EntrezGene2538812LMBR1-like membrane protein
WikiGene2538812LMBR1-like membrane protein
UniProtKB/SwissProtO94599LIMR family protein C622.11
ModBaseO94599Database of comparative protein structure models
Pfam Protein DomainsO94599Pfam Domain Arrangement
RefSeq PeptideNP_588183LMBR1-like membrane protein
RefSeq mRNANM_001023173972h- LMBR1-like membrane protein (SPCC622.11), mRNA
European Nucleotide ArchiveCAA21867ENA Protein Mapping
SPD / RIKEN26/26D08Orfeome Localization Data
UniParcUPI000006AC50UniProt Archive

Literature for SPCC622.11
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013