SPCC622.11

Synonyms ChromosomeIII
ProductLMBR1-like membrane protein Gene Start1417100
Feature Typeprotein coding Gene End1419224
Name Description CDS Start1417100
Characterisation Statusconserved_unknown CDS End1418983

Ensembl Gene Location
SPNCRNA.1194 hta1 htb1 SPCC622.10c > SPCC622.11 < gdh1 tti1 SPNCRNA.1195
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
114171001417438
214176341419224

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF04791 Pfam LMBR1-like membrane protein 61 504 408.9 1
TMHMM tmhmm Double transmembrane domain 21 41 0.59741 1312
TMHMM tmhmm Double transmembrane domain 51 75 0.84233 1312
TMHMM tmhmm Double transmembrane domain 87 108 0.99092 1312
TMHMM tmhmm Double transmembrane domain 122 142 0.9987 1312
TMHMM tmhmm Double transmembrane domain 163 181 0.99997 1312
TMHMM tmhmm Double transmembrane domain 199 219 0.99828 1312
TMHMM tmhmm Double transmembrane domain 352 372 0.97726 1312
TMHMM tmhmm Double transmembrane domain 386 404 0.9958 1312
TMHMM tmhmm Double transmembrane domain 434 455 0.44845 1312
TMHMM tmhmm Double transmembrane domain 484 502 0.65722 1312


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00696phosphorylated residueTemporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00696

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073
SO:0000065protein N-terminal signal sequenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000065

Protein Properties

Ave. residue weight 115.35 Da
Charge 18.00
Isoelectric point 9.41
Molecular weight 64.83 kDa
Number of residues 562
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005737cytoplasmIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005737
GO:0005794Golgi apparatusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005794

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094


External References

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Database Identifier Description
NBRP SPCC622.11 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC622.11 Retrieval of eukaryotic orthologs
BioGrid SPCC622.11 BioGRID Interaction Datasets
Bähler Lab SPCC622.11 Cell Cycle Expression Profile
Bähler Lab SPCC622.11 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC622.11 Pheromone response/mating expression profiles
Bähler Lab SPCC622.11 Environmental stress expression profiles
Bähler Lab SPCC622.11 Bähler Lab Transcriptome Viewer
Cyclebase SPCC622.11 Cell Cycle Data
Entrez Gene SPCC622.11 Link to Entrez Gene
SPD / RIKEN26/26D08Orfeome Localization Data
UniProtKB/SwissProtO94599LIMR family protein C622.11
ArrayExpressO94599Link to ArrayExpress
RefSeq PeptideNP_588183LMBR1-like membrane protein
RefSeq mRNANM_001023173972h- LMBR1-like membrane protein (SPCC622.11), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA21867ENA Protein Mapping
UniParcUPI000006AC50UniProt Archive

Literature for SPCC622.11

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Search: UK PMC or PubMed