SPCC63.06

Synonyms ChromosomeIII
Producthuman WDR89 family WD repeat protein Gene Start845924
Feature Typeprotein coding Gene End847352
Name Description CDS Start845924
Characterisation Statusconserved_unknown CDS End846919

Ensembl Gene Location
SPCC63.03 SPNCRNA.581 mok14 SPCC63.05 > SPCC63.06 < SPCTRNASER.08 SPCC63.07 atg1 SPRRNA.55
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1845924847352

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00400 Pfam WD40 repeat 143 173 18.1 107
50978 Superfamily 25 330 76.5 127
SM00320 Smart WD40 repeat 134 175 32.3 121
SM00320 Smart WD40 repeat 42 83 15.4 121
SM00320 Smart WD40 repeat 88 130 5.7 121
SM00320 Smart WD40 repeat 291 330 2.5 121
PS50082 PROSITE WD40 repeat 142 184 8.838 100
PS50294 PROSITE WD40-repeat-containing domain 70 184 10.39 104

Protein Properties

Ave. residue weight 112.55 Da
Charge -11.00
Isoelectric point 4.87
Molecular weight 37.25 kDa
Number of residues 331
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusISS SGD:S000004980GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Protein Family

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DescriptionSourceAll Genes
WD repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000190

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
dsc1ubiquitin-protein ligase E3 (predicted) Negative Genetic
dsc3conserved fungal protein Negative Genetic


External References

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Database Identifier Description
NBRP SPCC63.06 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC63.06 Retrieval of eukaryotic orthologs
BioGrid SPCC63.06 BioGRID Interaction Datasets
Bähler Lab SPCC63.06 Cell Cycle Expression Profile
Bähler Lab SPCC63.06 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC63.06 Pheromone response/mating expression profiles
Bähler Lab SPCC63.06 Environmental stress expression profiles
Bähler Lab SPCC63.06 Bähler Lab Transcriptome Viewer
Cyclebase SPCC63.06 Cell Cycle Data
Entrez Gene SPCC63.06 Link to Entrez Gene
SPD / RIKEN14/14E10Orfeome Localization Data
UniProtKB/SwissProtQ9Y7T2Uncharacterized WD repeat-containing protein C63.06
ArrayExpressQ9Y7T2Link to ArrayExpress
RefSeq PeptideNP_587980WD repeat-containing protein
RefSeq mRNANM_001022971972h- WD repeat-containing protein (SPCC63.06), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAB40010ENA Protein Mapping
UniParcUPI000006BDDAUniProt Archive

Literature for SPCC63.06

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Search: UK PMC or PubMed