snd1 (SPCC645.08c)

Synonyms ChromosomeIII
ProductRNA-binding protein Snd1 Gene Start1252275
Feature Typeprotein coding Gene End1249494
Name Description CDS Start1252193
Characterisation Statusconserved_unknown CDS End1249557

Ensembl Gene Location
rgf3 SPNCRNA.1181 rgf1 > snd1 < SPCTRNASER.10 mrpl37 SPCC645.10 mug117 SPCC645.12c
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
112522751249494

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00567 Pfam Tudor domain 646 765 78.8 1
PF00565 Pfam Staphylococcal nuclease (SNase-like) 524 626 64.1 2
PF00565 Pfam Staphylococcal nuclease (SNase-like) 352 463 45.2 2
PF00565 Pfam Staphylococcal nuclease (SNase-like) 197 312 40.1 2
PF00565 Pfam Staphylococcal nuclease (SNase-like) 34 140 29.7 2
50199 Superfamily 3 146 59.5 2
50199 Superfamily 160 312 82.4 2
50199 Superfamily 319 471 97.9 2
50199 Superfamily 486 633 86.4 2
50199 Superfamily 704 877 50.7 2
63748 Superfamily 672 768 59.9 5
SM00318 Smart Staphylococcal nuclease (SNase-like) 326 464 191.8 2
SM00318 Smart Staphylococcal nuclease (SNase-like) 493 626 188.7 2
SM00318 Smart Staphylococcal nuclease (SNase-like) 167 312 175.4 2
SM00318 Smart Staphylococcal nuclease (SNase-like) 3 142 158.5 2
SM00333 Smart Tudor domain 694 753 57 2
PS50304 PROSITE Tudor domain 695 755 11.853 1
PS50830 PROSITE Staphylococcal nuclease (SNase-like) 3 142 23.155 2
PS50830 PROSITE Staphylococcal nuclease (SNase-like) 167 312 25.029 2
PS50830 PROSITE Staphylococcal nuclease (SNase-like) 326 464 26.596 2
PS50830 PROSITE Staphylococcal nuclease (SNase-like) 493 626 20.861 2
PIRSF017179 PIRSF RNA-induced silencing complex, nuclease component Tudor-SN 1 878 1627.8 1


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00696phosphorylated residueTemporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00696

Protein Properties

Ave. residue weight 111.80 Da
Charge 7.00
Isoelectric point 7.49
Molecular weight 98.16 kDa
Number of residues 878
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viable
Temporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829
GO:0016442RNA-induced silencing complexIEAGO_REF:0000002Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0016442

Protein Family

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DescriptionSourceAll Genes
tudor domainTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0001140

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPCC645.08c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC645.08c Retrieval of eukaryotic orthologs
BioGrid SPCC645.08c BioGRID Interaction Datasets
Bähler Lab SPCC645.08c Cell Cycle Expression Profile
Bähler Lab SPCC645.08c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC645.08c Pheromone response/mating expression profiles
Bähler Lab SPCC645.08c Environmental stress expression profiles
Bähler Lab SPCC645.08c Bähler Lab Transcriptome Viewer
Cyclebase SPCC645.08c Cell Cycle Data
Entrez Gene SPCC645.08c Link to Entrez Gene
SPD / RIKEN38/38G02Orfeome Localization Data
UniProtKB/SwissProtQ9Y7U7Staphylococcal nuclease domain-containing protein 1
ArrayExpressQ9Y7U7Link to ArrayExpress
RefSeq PeptideNP_588117RNA-binding protein Snd1
RefSeq mRNANM_001023107972h- RNA-binding protein Snd1 (snd1), mRNA
European Nucleotide ArchiveAB108422ENA EMBL mapping
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveBAC75640ENA Protein Mapping
European Nucleotide ArchiveCAB39904ENA Protein Mapping
UniParcUPI000006A669UniProt Archive

Literature for snd1

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Search: UK PMC or PubMed