rnc1 (SPCC757.09c)


Gene Standard Namernc1 Characterisation Statuspublished
Systematic IDSPCC757.09c Feature Typeprotein coding
Synonyms Name DescriptionRNA-binding protein that suppresses Calcineurin deletion
ProductRNA-binding protein that suppresses calcineurin deletion Rnc1 Product Size398aa, 43.38 kDa
Genomic Location Chromosome III, 66972-64099 (2874nt); CDS:66685-65489 (1197nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
mRNA 3'-UTR AU-rich region binding3
Annotation ExtensionEvidenceWith/FromReference
mRNA binding28
Annotation ExtensionEvidenceWith/FromReference
protein binding859
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process

GO Slim Terms

signaling


Term NameCount
3'-UTR-mediated mRNA stabilization2
Annotation ExtensionEvidenceWith/FromReference
negative regulation of MAPK cascade7
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2314
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
normal growth on terbinafinernc1ΔNull37
resistance to caffeinernc1ΔNull26
resistance to hydrogen peroxidernc1ΔNull73
sensitive to 5-fluorouracilrnc1ΔNull271
sensitive to camptothecinrnc1ΔNull225
sensitive to clotrimazolernc1ΔNull105
sensitive to micafunginrnc1ΔNull116
sensitive to sodium butyraternc1ΔNull93
sensitive to tacrolimusrnc1ΔNull81
sensitive to trichostatin Arnc1ΔNull43
sensitive to valproic acidrnc1ΔNull155
viable vegetative cell populationrnc1ΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
abolished protein phosphorylation during cellular response to heat2
affecting pmk1rnc1+ (wild type)Overexpression
abolished protein phosphorylation during vegetative growth33
affecting rnc1T50A (T50A)Not specified
decreased protein level during vegetative growth95
affecting pmp1rnc1ΔNull
decreased RNA binding10
affecting pmp1 and rnc1G110D (G110D)Not specified
affecting pmp1 and rnc1G195D (G195D)Not specified
affecting pmp1 and rnc1G557D (G557D)Not specified
decreased RNA level during vegetative growth150
affecting pmp1rnc1ΔNull
increased protein phosphorylation during cellular response to heat2
affecting pmk1rnc1ΔNull
increased protein phosphorylation during vegetative growth35
affecting pmk1rnc1ΔNull
increased RNA catabolic process during vegetative growth4
affecting pmp1rnc1ΔNull
normal RNA level during vegetative growth101
affecting pek1rnc1ΔNull
viable vegetative cell, abnormal cell shape, normal cell sizernc1ΔNull215
Target Of
OntologyRelationshipGeneProduct
FYPO affected by mutation in pek1 MAP kinase kinase Pek1
FYPO affected by mutation in pmk1 MAP kinase Pmk1
FYPO affected by mutation in rnc1 RNA-binding protein that suppresses calcineurin deletion Rnc1
GO substrate of pmk1 MAP kinase Pmk1
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons66972..64099
mRNA66972..64099
5' UTR66972..66686PMID:21511999
CDS66685..65489
3' UTR65488..64099PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00013 Pfam IPR004088 K Homology domain, type 1 322 384 5
PF00013 Pfam IPR004088 K Homology domain, type 1 181 243 5
PF00013 Pfam IPR004088 K Homology domain, type 1 100 156 5
SM00322 SMART IPR004087 K Homology domain 319 390 5
SM00322 SMART IPR004087 K Homology domain 177 248 5
SM00322 SMART IPR004087 K Homology domain 92 162 5
PS50084 Prosite Profiles IPR004088 K Homology domain, type 1 178 243 4
PS50084 Prosite Profiles IPR004088 K Homology domain, type 1 320 385 4
PS50084 Prosite Profiles IPR004088 K Homology domain, type 1 93 157 4
PTHR10288:SF102 HMMPANTHER 92 396 1
PTHR10288 HMMPANTHER 92 396 2
3.30.1370.10 Gene3D IPR004088 K Homology domain, type 1 318 389 8
3.30.1370.10 Gene3D IPR004088 K Homology domain, type 1 176 246 8
3.30.1370.10 Gene3D IPR004088 K Homology domain, type 1 91 164 8
SSF54791 SuperFamily IPR004088 K Homology domain, type 1 90 163 9
SSF54791 SuperFamily IPR004088 K Homology domain, type 1 170 251 9
SSF54791 SuperFamily IPR004088 K Homology domain, type 1 317 389 9

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000766KH domainTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000766

Protein Properties

Ave. residue weight 108.99 Da
Charge 4.00
Isoelectric point 7.61
Molecular weight 43.38 kDa
Number of residues 398
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1672
present during mitotic M phaseS18
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S18 PMID:21712547
O-phospho-L-threonine 698
added by pmk1T50
Annotation ExtensionEvidenceResidueReference
added by pmk1 IDA T50 PMID:12931193
phosphorylated residue 1927
Annotation ExtensionEvidenceResidueReference
NAS PMID:12931193
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
50319during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
52078during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
47201during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
44239during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
49074during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
26554.51during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
14160.29during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
28during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
6during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4603
conserved in eukaryotes4514
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2501
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured byfar8SIP/FAR complex striatin subunit, Far8/Csc3 Affinity Capture-MSPMID:22119525
binds DNA-binding domain construct withimp4U3 snoRNP-associated protein Imp4 (predicted) Two-hybridPMID:23695164
modified bypmk1MAP kinase Pmk1 Biochemical ActivityPMID:12931193
affinity captured bypmp1dual-specificity MAP kinase phosphatase Pmp1 Affinity Capture-WesternPMID:12931193
binds to RNApmp1dual-specificity MAP kinase phosphatase Pmp1 Protein-RNAPMID:20692117
binds activation domain construct withrnc1RNA-binding protein that suppresses calcineurin deletion Rnc1 Two-hybridPMID:23695164
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withair1zinc knuckle TRAMP complex subunit Air1 Negative GeneticPMID:22681890
negative genetic interaction withalm1medial ring protein Alm1 Negative GeneticPMID:22681890
negative genetic interaction withamk2AMP-activated protein kinase beta subunit Amk2 Negative GeneticPMID:18818364
negative genetic interaction withamk2AMP-activated protein kinase beta subunit Amk2 Negative GeneticPMID:22681890
negative genetic interaction withams2cell cycle regulated GATA-type transcription factor Ams2 Negative GeneticPMID:22681890
negative genetic interaction withapc10anaphase-promoting complex substrate recognition subunit Apc10 Negative GeneticPMID:22681890
negative genetic interaction witharp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:18818364
negative genetic interaction witharp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:22681890
negative genetic interaction witharp6actin-like protein Arp6 Negative GeneticPMID:22681890
positive genetic interaction witharp8actin-like protein, Ino80 complex subunit Arp8 Positive GeneticPMID:22681890
negative genetic interaction withash2Ash2-trithorax family protein Negative GeneticPMID:18818364
negative genetic interaction withash2Ash2-trithorax family protein Negative GeneticPMID:22681890
negative genetic interaction withask1DASH complex subunit Ask1 Negative GeneticPMID:18818364
negative genetic interaction withask1DASH complex subunit Ask1 Negative GeneticPMID:22681890
negative genetic interaction withbdf2BET family double bromodomain protein Bdf2 Negative GeneticPMID:18818364
negative genetic interaction withbob1prefoldin subunit 5 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withbst1GPI inositol deacylase Bst1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withbun107WD repeat protein, human WDR48 family Bun107 Negative GeneticPMID:18818364
negative genetic interaction withbun62WD repeat protein, human WDR20 family, Bun62 Negative GeneticPMID:22681890
negative genetic interaction withcaf1CCR4-Not complex CAF1 family ribonuclease subunit Caf1 Negative GeneticPMID:18818364
negative genetic interaction withcbs2AMP-activated protein kinase gamma subunit cbs2 Negative GeneticPMID:18818364
negative genetic interaction withccq1telomere maintenance protein Ccq1 Negative GeneticPMID:22681890
negative genetic interaction withcgi121EKC/KEOPS complex subunit Cgi121 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withcgs2cAMP-specific phosphodiesterase Cgs2 Negative GeneticPMID:22681890
negative genetic interaction withclr3histone deacetylase (class II) Clr3 Negative GeneticPMID:18818364
negative genetic interaction withclr3histone deacetylase (class II) Clr3 Negative GeneticPMID:22681890
positive genetic interaction withclr4histone H3 lysine methyltransferase Clr4 Positive GeneticPMID:22681890
negative genetic interaction withcsr102sec14 cytosolic factor family phosphatidylinositol transmembrane transporter (predicted) Negative GeneticPMID:22681890
negative genetic interaction withcwf19complexed with Cdc5 protein Cwf19 Negative GeneticPMID:22681890
negative genetic interaction withdad2DASH complex subunit Dad2 Negative GeneticPMID:18818364
negative genetic interaction withdad2DASH complex subunit Dad2 Negative GeneticPMID:22681890
negative genetic interaction withdad3DASH complex subunit Dad3 Negative GeneticPMID:22681890
negative genetic interaction withdad4DASH complex subunit Dad4 Negative GeneticPMID:22681890
negative genetic interaction withdam1DASH complex subunit Dam1 Negative GeneticPMID:22681890
negative genetic interaction withdef1RNAPII degradation factor Def1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withdot2ESCRT II complex subunit Dot2 Negative GeneticPMID:18818364
negative genetic interaction withdph5diphthine synthase Dph5 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withdsc1Golgi Dsc E3 ligase complex subunit Dsc1 Positive GeneticPMID:21504829
negative genetic interaction withduo1DASH complex subunit Duo1 Negative GeneticPMID:22681890
positive genetic interaction witheki1choline/ethanolamine kinase Eki1 (predicted) Positive GeneticPMID:22681890
negative genetic interaction witherd1Erd1 homolog (predicted) Negative GeneticPMID:22681890
negative genetic interaction witherp2COPII-coated vesicle component Erp2/3/4 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withfbp1fructose-1,6-bisphosphatase Fbp1 Positive GeneticPMID:22681890
negative genetic interaction withfft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Negative GeneticPMID:18818364
negative genetic interaction withfft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Negative GeneticPMID:22681890
negative genetic interaction withgcd10tRNA (m1A) methyltransferase Gcd10 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withgcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Positive GeneticPMID:18818364
negative genetic interaction withgef1Cdc42 RhoGEF Gef1 Negative GeneticPMID:22681890
negative genetic interaction withgit3G-protein coupled receptor Git3 Negative GeneticPMID:22681890
negative genetic interaction withgit5heterotrimeric G protein beta subunit Git5 Negative GeneticPMID:22681890
negative genetic interaction withgsk3serine/threonine protein kinase Gsk3 Negative GeneticPMID:22681890
negative genetic interaction withhip4histone promoter control protein Hip4 Negative GeneticPMID:22681890
negative genetic interaction withhos2histone deacetylase (class I) Hos2 Negative GeneticPMID:18818364
negative genetic interaction withhos2histone deacetylase (class I) Hos2 Negative GeneticPMID:22681890
positive genetic interaction withhrp3ATP-dependent DNA helicase Hrp3 Positive GeneticPMID:18818364
negative genetic interaction withhrq1RecQ type DNA helicase Hrq1 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withhrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Positive GeneticPMID:22681890
negative genetic interaction withilv1acetolactate synthase catalytic subunit Negative GeneticPMID:22681890
negative genetic interaction withiwr1RNA polymerase II nuclear import protein Iwr1 (predicted) Negative GeneticPMID:18818364
positive genetic interaction withkin1microtubule affinity-regulating kinase Kin1 Positive GeneticPMID:22681890
negative genetic interaction withleo1RNA polymerase II associated Paf1 complex (predicted) Negative GeneticPMID:18818364
negative genetic interaction withleo1RNA polymerase II associated Paf1 complex (predicted) Negative GeneticPMID:22681890
negative genetic interaction withliz1pantothenate transmembrane transporter Liz1 Negative GeneticPMID:22681890
negative genetic interaction withmad1mitotic spindle checkpoint protein Mad1 Negative GeneticPMID:18818364
negative genetic interaction withmad1mitotic spindle checkpoint protein Mad1 Negative GeneticPMID:22681890
negative genetic interaction withmak10NatC N-acetyltransferase complex subunit Mak10 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmak3histidine kinase Mak3 Negative GeneticPMID:22681890
negative genetic interaction withmcl1DNA polymerase alpha accessory factor Mcl1 Negative GeneticPMID:22681890
negative genetic interaction withmed20mediator complex subunit Med20 Negative GeneticPMID:18818364
negative genetic interaction withmed6mediator complex subunit Med6 Negative GeneticPMID:18818364
positive genetic interaction withmet14adenylyl-sulfate kinase (predicted) Positive GeneticPMID:22681890
negative genetic interaction withmga2IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted) Negative GeneticPMID:18818364
negative genetic interaction withmga2IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmis4adherin, cohesin loading factor Mis4 Negative GeneticPMID:23050226
negative genetic interaction withmlh1MutL family protein Mlh1 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withmms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:18818364
negative genetic interaction withmsh6MutS protein homolog Negative GeneticPMID:18818364
negative genetic interaction withmug80cyclin Clg1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withnaa38NatC N-acetyltransferase non-catalytic Sm-like domain subunit Naa38 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withnup132nucleoporin Nup132 Negative GeneticPMID:22681890
negative genetic interaction withnup60nucleoporin Nup60 Negative GeneticPMID:22681890
negative genetic interaction withomh6alpha-1,2-mannosyltransferase Omh6 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withpab2poly(A) binding protein Pab2 Negative GeneticPMID:22681890
negative genetic interaction withpac10prefoldin subunit 3 Pac10 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withpar1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:18818364
negative genetic interaction withpar1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
positive genetic interaction withpbr1ubiquitin-protein ligase E3 (predicted) Positive GeneticPMID:18818364
negative genetic interaction withpef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Negative GeneticPMID:22681890
rescued by overexpression ofpek1MAP kinase kinase Pek1 Dosage RescuePMID:12931193
negative genetic interaction withpfa3palmitoyltransferase Pfa3 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withpht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:18818364
negative genetic interaction withpht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:22681890
negative genetic interaction withplb1phospholipase B homolog Plb1 Negative GeneticPMID:22681890
negative genetic interaction withpmc2mediator complex subunit Pmc2/Med1 Negative GeneticPMID:18818364
negative genetic interaction withpng2ING family homolog Png2 Negative GeneticPMID:18818364
negative genetic interaction withpob3FACT complex subunit Pob3 Negative GeneticPMID:22681890
negative genetic interaction withpom1DYRK family protein kinase Pom1 Negative GeneticPMID:18818364
negative genetic interaction withpom1DYRK family protein kinase Pom1 Negative GeneticPMID:22681890
negative genetic interaction withpop2F-box/WD repeat protein Pop2 Negative GeneticPMID:22681890
overexpression rescuesppb1calcium-dependent serine/threonine protein phosphatase calcineurin A, catalytic subunit Ppb1 Dosage RescuePMID:12931193
positive genetic interaction withppr2mitochondrial PPR repeat protein Ppr2 Positive GeneticPMID:22681890
negative genetic interaction withprw1Clr6 histone deacetylase complex subunit Prw1 Negative GeneticPMID:22681890
negative genetic interaction withprz1calcineurin responsive transcription factor Prz1 Negative GeneticPMID:22681890
negative genetic interaction withpsh3ER chaperone SHR3 homologue Psh3 Negative GeneticPMID:22681890
negative genetic interaction withpyp1tyrosine phosphatase Pyp1 Negative GeneticPMID:22681890
negative genetic interaction withpzh1serine/threonine protein phosphatase Pzh1 Negative GeneticPMID:22681890
negative genetic interaction withrav2RAVE complex subunit Rav2 Negative GeneticPMID:22681890
negative genetic interaction withrdl2mitochondrial thiosulfate sulfurtransferase Rdl2 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withrec11meiotic cohesin complex subunit Rec11 Negative GeneticPMID:22681890
negative genetic interaction withrec14Ski complex subunit Rec14 Negative GeneticPMID:22681890
negative genetic interaction withrga2Rho-type GTPase activating protein Rga2 Negative GeneticPMID:22681890
negative genetic interaction withrkr1RQC complex ubiquitin-protein ligase E3 Rkr1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withrox3mediator complex subunit Med19/Rox3 Negative GeneticPMID:22681890
negative genetic interaction withrpl210260S ribosomal protein L21 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withrsc1RSC complex subunit Rsc1 Negative GeneticPMID:18818364
positive genetic interaction withscs7sphingosine hydroxylase Scs7 Positive GeneticPMID:18818364
negative genetic interaction withsdc1Dpy-30 domain protein Sdc1 Negative GeneticPMID:22681890
negative genetic interaction withsde2silencing defective protein Sde2 Negative GeneticPMID:22681890
negative genetic interaction withsdh4TIM22 inner membrane protein import complex anchor subunit Tim18 Negative GeneticPMID:18818364
negative genetic interaction withsds23PP2A-type phosphatase inhibitor Sds23/Moc1 Negative GeneticPMID:22681890
negative genetic interaction withsec28coatomer epsilon subunit (predicted) Negative GeneticPMID:18818364
negative genetic interaction withsen1ATP-dependent 5' to 3' DNA/RNA helicase Sen1 Negative GeneticPMID:22681890
negative genetic interaction withser2phosphoserine phosphatase Ser2 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withset3histone lysine methyltransferase Set3 Negative GeneticPMID:18818364
negative genetic interaction withset3histone lysine methyltransferase Set3 Negative GeneticPMID:22681890
negative genetic interaction withsfp1transcription factor Sfp1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withski3Ski complex TPR repeat subunit Ski3 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withsno1glutamine aminotransferase subunit Sno1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withsnz1pyridoxine biosynthesis protein Negative GeneticPMID:22681890
negative genetic interaction withspa2cell polarity protein Spa2 Negative GeneticPMID:22681890
negative genetic interaction withSPAC10F6.13caspartate aminotransferase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPAC17H9.04cRNA-binding protein Negative GeneticPMID:22681890
negative genetic interaction withSPAC17H9.13cglutamate 5-kinase (predicted) Negative GeneticPMID:22681890
positive genetic interaction withSPAC1B3.02ctranscription elongation factor, Elf1 family (predicted) Positive GeneticPMID:22681890
negative genetic interaction withSPAC227.17cconserved protein Negative GeneticPMID:22681890
negative genetic interaction withSPAC26H5.09coxidoreductase involved in NADPH regeneration (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPAC977.05cconserved fungal family Negative GeneticPMID:22681890
negative genetic interaction withSPAP8A3.07cphospho-2-dehydro-3-deoxyheptonate aldolase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:22681890
positive genetic interaction withSPBC29A10.16ccytochrome b5 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withSPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:18818364
negative genetic interaction withSPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:22681890
negative genetic interaction withSPBC36B7.08cnucleosome assembly protein (predicted) Negative GeneticPMID:18818364
negative genetic interaction withSPBC36B7.08cnucleosome assembly protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBP35G2.14RNA-binding protein Negative GeneticPMID:22681890
negative genetic interaction withspc19DASH complex subunit Spc19 Negative GeneticPMID:22681890
negative genetic interaction withspc34DASH complex subunit Spc34 Negative GeneticPMID:18818364
negative genetic interaction withspc34DASH complex subunit Spc34 Negative GeneticPMID:22681890
negative genetic interaction withSPCC18.10pyridoxine-pyridoxal-pyridoxamine kinase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPCC584.11cSvf1 family protein Svf1 Negative GeneticPMID:22681890
positive genetic interaction withsrb10cyclin-dependent protein Srb mediator subunit kinase Srb10 Positive GeneticPMID:22681890
negative genetic interaction withssp2AMP-activated protein serine/threonine kinase alpha subunit Ssp2 Negative GeneticPMID:22681890
negative genetic interaction withssu72phosphoric ester hydrolase Ssu72 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withste20Rictor homolog, Ste20 Negative GeneticPMID:22681890
negative genetic interaction withswd2Set1C complex subunit Swd2.1 Negative GeneticPMID:18818364
negative genetic interaction withswi3replication fork protection complex subunit Swi3 Negative GeneticPMID:18818364
positive genetic interaction withswi6HP1 family chromodomain protein Swi6 Positive GeneticPMID:22681890
positive genetic interaction withtas3RITS complex subunit 3 Positive GeneticPMID:22681890
negative genetic interaction withtfs1transcription elongation factor TFIIS Negative GeneticPMID:18818364
negative genetic interaction withtfs1transcription elongation factor TFIIS Negative GeneticPMID:22681890
positive genetic interaction withtip1CLIP170 family protein Tip1 Positive GeneticPMID:22681890
negative genetic interaction withtls1splicing factor Tls1 Negative GeneticPMID:22681890
positive genetic interaction withtom70mitochondrial TOM complex subunit Tom70 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withtpp1trehalose-6-phosphate phosphatase Tpp1 Negative GeneticPMID:22681890
negative genetic interaction withtrm112protein and tRNA methyltransferase regulatory subunit Trm112 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withusp102U1 snRNP-associated protein Usp102 Negative GeneticPMID:22681890
negative genetic interaction withwis2cyclophilin family peptidyl-prolyl cis-trans isomerase Wis2 Negative GeneticPMID:22681890
negative genetic interaction withwtf15wtf element Wtf15 Negative GeneticPMID:22681890
negative genetic interaction withyaf9YEATS family histone acetyltransferase subunit Yaf9 Negative GeneticPMID:18818364
negative genetic interaction withypa2protein phosphatase type 2A regulator, PTPA family Ypa2 Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPCC757.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC757.09c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC757.09c BioGRID Interaction Datasets
Expression Viewer SPCC757.09c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC757.09c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC757.09c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC757.09c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC757.09c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC757.09c Transcriptome Viewer (Bähler Lab)
GEO SPCC757.09c GEO profiles
PInt SPCC757.09c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC757.09c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC757.09c Fission yeast phenotypic data & analysis
Cyclebase SPCC757.09c.1 Cell Cycle Data
SPD / RIKEN19/19B07Orfeome Localization Data
UniProtKB/SwissProtO74919RNA-binding protein rnc1
ModBaseO74919Database of comparative protein structure models
STRINGO74919Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_587684RNA-binding protein
RefSeq mRNANM_001022679972h- RNA-binding protein (rnc1), mRNA
European Nucleotide ArchiveCAA21234.1ENA Protein Mapping
UniParcUPI000006A460UniProt Archive

Literature for rnc1

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015