SPCC794.08

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC794.08 Gene Start265315
Synonyms Gene End268006
ProductHEAT repeat protein, involved in localization to plasma membrane (predicted) Gene Length2692
Feature Typeprotein coding CDS Start265445
Name Description CDS End267881
Characterisation Statusbiological_role_inferred CDS Length2437

Ensembl Gene Location
  1. SPCC794.06
  2. lat1
  3. SPNCRNA.1123
  4. SPCC794.08
  5. ef1a-a
  6. SPCC794.10
  7. SPCC794.11c
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPCC794.08delta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0090002establishment of protein localization to plasma membraneISOSGD:S000004825GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionISOSGD:S000004825GO_REF:0000024
GO:0005886plasma membraneISOSGD:S000004825GO_REF:0000024
GO:0043234protein complexNASGO_REF:0000051
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1265315265644
2265685268006

References

Region Start End Reference
three_prime_UTR267882268006PMID:21511999
five_prime_UTR265315265444PMID:21511999
three_prime_UTR267882268006PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
SSF48371 IPR016024 SuperFamily 242 522 130
SSF48371 IPR016024 SuperFamily 68 129 130
PTHR12444 hmmpanther 1 419 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000328HEAT repeatTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000328

Protein Properties

Ave. residue weight 113.26 Da
Charge 21.00
Isoelectric point 8.49
Molecular weight 90.38 kDa
Number of residues 798
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1708.21PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide2254.08PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.88PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide4PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPCC794.08 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC794.08 Retrieval of eukaryotic orthologs
BioGrid SPCC794.08 BioGRID Interaction Datasets
Bähler Lab SPCC794.08 Cell Cycle Expression Profile
Bähler Lab SPCC794.08 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC794.08 Pheromone response/mating expression profiles
Bähler Lab SPCC794.08 Environmental stress expression profiles
Bähler Lab SPCC794.08 Bähler Lab Transcriptome Viewer
Cyclebase SPCC794.08 Cell Cycle Data
PInt SPCC794.08 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC794.08 Entrez Gene
WikiGene2538740protein efr3
Uniprot_genenameEFR3
EntrezGene2538740protein efr3
UniProtKB/SwissProtO59817Protein efr3
ModBaseO59817Database of comparative protein structure models
Pfam Protein DomainsO59817Pfam Domain Arrangement
RefSeq PeptideNP_587756protein efr3
RefSeq mRNANM_001022749972h- protein efr3 (SPCC794.08), mRNA
European Nucleotide ArchiveCAA19135ENA Protein Mapping
SPD / RIKEN28/28G05Orfeome Localization Data
UniParcUPI0000069FEBUniProt Archive

Literature for SPCC794.08
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013