ucp12 (SPCC895.09c)

Synonyms ChromosomeIII
ProductATP-dependent RNA helicase Ucp12 (predicted) Gene Start1022436
Feature Typeprotein coding Gene End1016696
Name Description CDS Start1021291
Characterisation Statusconserved_unknown CDS End1017094

Ensembl Gene Location
alp14 SPCC895.08c > ucp12 < SPNCRNA.1167 SPCC825.01 SPCC825.02
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
110224361021028
210209561020768
310207081020108
410200661018046
510180021016696

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF04408 Pfam Helicase-associated domain 1002 1072 52.9 9
PF00271 Pfam Helicase, C-terminal 840 927 43.5 69
PF07717 Pfam Domain of unknown function DUF1605 1147 1256 44.9 9
PF00270 Pfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 584 741 36.6 43
PF05773 Pfam RWD domain 400 501 27.8 5
46934 Superfamily 267 331 28.2 13
52540 Superfamily 572 962 174.4 295
54495 Superfamily 389 512 53.3 19
SM00591 Smart RWD domain 405 504 80.8 6
SM00847 Smart Helicase-associated domain 1001 1087 66.2 9
SM00490 Smart Helicase, C-terminal 824 927 62.9 67
SM00487 Smart Helicase, superfamily 1/2, ATP-binding domain 575 765 96 70
PS50908 PROSITE RWD domain 405 504 15.047 6
PS51192 PROSITE Helicase, superfamily 1/2, ATP-binding domain 587 756 19.858 69
PS51194 PROSITE Helicase, C-terminal 797 968 14.512 69
PS00690 scanprosite DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site 698 707 10

Protein Properties

Ave. residue weight 112.95 Da
Charge 35.50
Isoelectric point 8.86
Molecular weight 149.88 kDa
Number of residues 1327
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0004004ATP-dependent RNA helicase activityISS UniProtKB:Q06698GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0004004
GO:0005524ATP bindingISS UniProtKB:Q06698GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005524
IEAGO_REF:0000002
IEAGO_REF:0000004
GO:0043130ubiquitin bindingISS Interpro:IPR000449GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0043130

Protein Family

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DescriptionSourceAll Genes
UBA domain proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000794
RWD domainTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0001206

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPCC895.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC895.09c Retrieval of eukaryotic orthologs
BioGrid SPCC895.09c BioGRID Interaction Datasets
Bähler Lab SPCC895.09c Cell Cycle Expression Profile
Bähler Lab SPCC895.09c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC895.09c Pheromone response/mating expression profiles
Bähler Lab SPCC895.09c Environmental stress expression profiles
Bähler Lab SPCC895.09c Bähler Lab Transcriptome Viewer
Cyclebase SPCC895.09c Cell Cycle Data
Entrez Gene SPCC895.09c Link to Entrez Gene
SPD / RIKEN30/30G02Orfeome Localization Data
UniProtKB/SwissProtO94536Putative ATP-dependent RNA helicase ucp12
ArrayExpressO94536Link to ArrayExpress
RefSeq PeptideNP_588050ATP-dependent RNA helicase Ucp1 (predicted)
RefSeq mRNANM_001023042972h- ATP-dependent RNA helicase Ucp1 (predicted) (ucp12), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA22845ENA Protein Mapping
UniParcUPI0000069960UniProt Archive

Literature for ucp12

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Search: UK PMC or PubMed