rpl3601 (SPCC970.05)

Gene Standard Namerpl3601 Characterisation Statuspublished
Systematic IDSPCC970.05 Feature Typeprotein coding
Synonymsrpl36-1 Name Description
Product60S ribosomal protein L36 Product Size99aa, 11.26 kDa
Genomic Location Chromosome III, 506920-506350 (571nt); CDS:506875-506415 (461nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome256
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation471
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit82
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
slow vegetative cell population growthrpl3601Δ369
viable vegetative cell populationrpl3601Δ3862

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologyrpl3601Δ3103
Target Of
GO substrate of ubp4 ubiquitin C-terminal hydrolase Ubp4
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons506920..506654, 506492..506350
5' UTR506920..506876PMID:21511999
CDS506875..506654, 506492..506415
3' UTR506414..506350PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01158 Pfam IPR000509 Ribosomal protein L36e 4 96 2
PS01190 Prosite Patterns IPR000509 Ribosomal protein L36e 50 60 2
PTHR10114 HMMPANTHER IPR000509 Ribosomal protein L36e 1 99 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.77 Da
Charge 20.50
Codon Adaptation Index 0.69
Isoelectric point 12.36
Molecular weight 11.26 kDa
Number of residues 99

Protein Modifications

Term NameResidueCount
O-phospho-L-serineS62, S94, S95 2293
Annotation ExtensionEvidenceResidueReference
IDA S95 PMID:25720772
IDA S62 PMID:25720772
IDA S94 PMID:25720772
ubiquitinylated lysineK82 514
Annotation ExtensionEvidenceResidueReference
IDA PMID:26412298
mass spectrometry evidence K82 PMID:26412298
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rpl3601 (SPCC970.05)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3160.42during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
47during GO:0072690PECO:0000126,
population wideexperimental evidencePMID:23101633
4.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
conserved in fungi4608
conserved in eukaryotes4516
conserved in metazoa3498
conserved in vertebrates3473
conserved in eukaryotes only2525

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

Load genes that interact physically with SPCC970.05 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bycid14TRAMP complex poly(A) polymerase subunit Cid14 Affinity Capture-MSPMID:20403971
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
affinity captured byair1TRAMP complex zinc knuckle subunit Air1 Affinity Capture-MSPMID:20403971
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
binds DNA-binding domain construct withnap2nucleosome assembly protein Nap2 Two-hybridPMID:26771498
Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPCC970.05 into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction witheso1mitotic cohesin N-acetyltransferase/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
External References
Database Identifier Description
NBRP SPCC970.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC970.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC970.05 BioGRID Interaction Datasets
Expression Viewer SPCC970.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC970.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC970.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC970.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC970.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC970.05 Transcriptome Viewer (Bähler Lab)
GEO SPCC970.05 GEO profiles
PInt SPCC970.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC970.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC970.05 Fission yeast phenotypic data & analysis
Cyclebase SPCC970.05.1 Cell Cycle Data
SPD / RIKEN04/04B07Orfeome Localization Data
UniProtKB/SwissProtQ9236560S ribosomal protein L36-A
ModBaseQ92365Database of comparative protein structure models
STRINGQ92365Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_58785060S ribosomal protein L36
RefSeq mRNANM_001022843972h- 60S ribosomal protein L36 (rpl3601), mRNA
European Nucleotide ArchiveD88771ENA EMBL mapping
European Nucleotide ArchiveCAA20698.1ENA Protein Mapping
UniParcUPI0000061AFEUniProt Archive

Literature for rpl3601

Search: Europe PMC or PubMed

Release Version: PomBase:30_62 - 30 Jan 2017