rpl3601 (SPCC970.05)

Gene Standard Namerpl3601 ChromosomeIII
Systematic IDSPCC970.05 Gene Start506920
Synonymsrpl36-1 Gene End506350
Product60S ribosomal protein L36 Gene Length571
Feature Typeprotein coding CDS Start506875
Name Description CDS End506415
Characterisation Statuspublished CDS Length461

Ensembl Gene Location
  1. SPCC970.08
  2. raf2
  3. SPCC970.06
  4. SPNCRNA.1141
  5. rpl3601
  6. mob2
  7. SPCC970.03
  8. SPCC970.02
  9. mis18
  10. SPNCRNA.1142
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrpl3601delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003735structural constituent of ribosomeISOSGD:S000004807GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000004807GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005829cytosolIDAPMID:16823372
GO:0022625cytosolic large ribosomal subunitISOSGD:S000004807GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1506920506654
2506492506350

References

Region Start End Reference
three_prime_UTR506414506350PMID:21511999
five_prime_UTR506920506876PMID:21511999
three_prime_UTR506414506350PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01158 IPR000509 Pfam Ribosomal protein L36e 4 96 2
PS01190 IPR000509 Prosite Patterns Ribosomal protein L36e 50 60 2
PTHR10114 IPR000509 hmmpanther Ribosomal protein L36e 1 99 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.77 Da
Charge 20.50
Isoelectric point 12.36
Molecular weight 11.26 kDa
Number of residues 99
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide3160.42PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide47PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide4.1PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
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External References
Database Identifier Description
NBRP SPCC970.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC970.05 Retrieval of eukaryotic orthologs
BioGrid SPCC970.05 BioGRID Interaction Datasets
Bähler Lab SPCC970.05 Cell Cycle Expression Profile
Bähler Lab SPCC970.05 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC970.05 Pheromone response/mating expression profiles
Bähler Lab SPCC970.05 Environmental stress expression profiles
Bähler Lab SPCC970.05 Bähler Lab Transcriptome Viewer
Cyclebase SPCC970.05 Cell Cycle Data
PInt SPCC970.05 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC970.05 Entrez Gene
WikiGene253888360S ribosomal protein L36
Uniprot_genenameRPL36A
EntrezGene253888360S ribosomal protein L36
SPD / RIKEN04/04B07Orfeome Localization Data
UniProtKB/SwissProtQ9236560S ribosomal protein L36-A
ModBaseQ92365Database of comparative protein structure models
Pfam Protein DomainsQ92365Pfam Domain Arrangement
RefSeq PeptideNP_58785060S ribosomal protein L36
RefSeq mRNANM_001022843972h- 60S ribosomal protein L36 (rpl3601), mRNA
European Nucleotide ArchiveBAA13701ENA Protein Mapping
European Nucleotide ArchiveCAA20698ENA Protein Mapping
UniParcUPI0000061AFEUniProt Archive

Literature for rpl3601
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013