rpl3601 (SPCC970.05)


Gene Standard Namerpl3601 Characterisation Statuspublished
Systematic IDSPCC970.05 Feature Typeprotein coding
Synonymsrpl36-1 Name Description
Product60S ribosomal protein L36 Product Size99aa, 11.26 kDa
Genomic Location Chromosome III, 506920-506350 (571nt); CDS:506875-506415 (461nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000004807GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationISOSGD:S000004807GO_REF:0000024473
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722315
GO:0022625cytosolic large ribosomal subunitISOSGD:S000004807GO_REF:000002483
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrpl3601ΔNullPMID:204732893759
Microscopyrpl3601ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrpl3601ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1506920506654
2506492506350

UTRs

Region Coordinates Reference
five_prime_UTR506920..506876PMID:21511999
three_prime_UTR506414..506350PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01158 Pfam IPR000509 Ribosomal protein L36e 4 96 2
PS01190 Prosite Patterns IPR000509 Ribosomal protein L36e 50 60 2
PTHR10114 HMMPANTHER IPR000509 Ribosomal protein L36e 1 99 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.77 Da
Charge 20.50
Isoelectric point 12.36
Molecular weight 11.26 kDa
Number of residues 99
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3160.42during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
47during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
4.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
External References
Database Identifier Description
NBRP SPCC970.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC970.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC970.05 BioGRID Interaction Datasets
Expression Viewer SPCC970.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC970.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC970.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC970.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC970.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC970.05 Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC970.05 Cell Cycle Data
GEO SPCC970.05 GEO profiles
PInt SPCC970.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC970.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC970.05 Fission yeast phenotypic data & analysis
SPD / RIKEN04/04B07Orfeome Localization Data
UniProtKB/SwissProtQ9236560S ribosomal protein L36-A
ModBaseQ92365Database of comparative protein structure models
STRINGQ92365Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_58785060S ribosomal protein L36
RefSeq mRNANM_001022843972h- 60S ribosomal protein L36 (rpl3601), mRNA
European Nucleotide ArchiveD88771ENA EMBL mapping
European Nucleotide ArchiveCAA20698.1ENA Protein Mapping
UniParcUPI0000061AFEUniProt Archive

Literature for rpl3601

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014