snoR61 (SPNCRNA.445)

Gene Standard NamesnoR61 ChromosomeII
Systematic IDSPNCRNA.445 Gene Start3874906
SynonymsSPNGAF57 Gene End3874254
Productsmall nucleolar RNA snR61 Gene Length653
Feature TypesnoRNA CDS Start
Name Description CDS End
Characterisation Status CDS Length

Ensembl Gene Location
  1. SPBC23E6.10c
  2. rsm10
  3. cwf3
  4. snoR61
  5. SPBC211.03c
  6. mcm6
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0030562rRNA 2'-O-ribose methylation guide activityISOSGD:S000006452GO_REF:0000024
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0000452snoRNA guided rRNA 2'-O-methylationISOSGD:S000006452GO_REF:0000024
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005730nucleolusISOSGD:S000006452GO_REF:0000024
GO:0031428box C/D snoRNP complexISOSGD:S000006452GO_REF:0000024
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
138749063874798
238744613874254

References

Region Start End Reference
snoRNA38749063874254PMID:18488015
exon38749063874798PMID:18488015
snoRNA38749063874254PMID:18488015
exon38749063874798PMID:18488015
exon38744613874254PMID:18488015
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide16PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide13PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated
Contact Curators
External References
Database Identifier Description
NBRP SPNCRNA.445 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPNCRNA.445 Retrieval of eukaryotic orthologs
BioGrid SPNCRNA.445 BioGRID Interaction Datasets
Bähler Lab SPNCRNA.445 Cell Cycle Expression Profile
Bähler Lab SPNCRNA.445 Meiosis/Sporulation Expression Profies
Bähler Lab SPNCRNA.445 Pheromone response/mating expression profiles
Bähler Lab SPNCRNA.445 Environmental stress expression profiles
Bähler Lab SPNCRNA.445 Bähler Lab Transcriptome Viewer
Cyclebase SPNCRNA.445 Cell Cycle Data
PInt SPNCRNA.445 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPNCRNA.445 Entrez Gene
European Nucleotide ArchiveAJ617330ENA EMBL mapping
RfamRF00476Rfam hosted at the Wellcome Trust Sanger Institute

Literature for snoR61
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013