prl54 (SPNCRNA.54)


Gene Standard Nameprl54 Characterisation Status
Systematic IDSPNCRNA.54 Feature TypencRNA
Synonyms Name Description
Productnon-coding RNA, poly(A)-bearing (predicted) Product Size549nt
Genomic Location Chromosome I, 4820804-4821352, 549nt

Ensembl Gene Location
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
148208044821352

UTRs

Region Coordinates Reference
exon4820804..4821352PMID:12597277
ncRNA4820804..4821352PMID:12597277
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
0.16during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
0.095during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
no detectable long open reading frameInferred from Sequence or Structural Similarity PMID:12597277393
Orthologs

Orthologs in Compara


External References
Database Identifier Description
NBRP SPNCRNA.54 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPNCRNA.54 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPNCRNA.54 BioGRID Interaction Datasets
Expression Viewer SPNCRNA.54 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPNCRNA.54 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPNCRNA.54 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPNCRNA.54 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPNCRNA.54 Polyadenylation Viewer (Gullerova lab)
pombeTV SPNCRNA.54 Transcriptome Viewer (Bähler Lab)
Cyclebase SPNCRNA.54 Cell Cycle Data
GEO SPNCRNA.54 GEO profiles
PInt SPNCRNA.54 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPNCRNA.54 Peptides identified in tandem mass spectrometry proteomics experiments
PUBMED12597277
European Nucleotide ArchiveAB084866ENA EMBL mapping

Literature for prl54

Search: Europe PMC or PubMed

Release Version: PomBase:22_45 - 08 Aug 2014