srp7 (SPNCRNA.98)


Gene Standard Namesrp7 Characterisation Status
Systematic IDSPNCRNA.98 Feature TypencRNA
Synonymssrp Name Description
Product7SL signal recognition particle component Product Size499nt
Genomic Location Chromosome I, 4268566-4269064, 499nt

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0006614SRP-dependent cotranslational protein targeting to membraneTASPMID:804161814
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005786signal recognition particle, endoplasmic reticulum targetingIDAPMID:80416187
IMPPMID:1315954
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
142685664269064
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
1300during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
280during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Orthologs

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
smn1SMN family protein Smn1 Affinity Capture-RNAPMID:23221635
External References
Database Identifier Description
NBRP SPNCRNA.98 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPNCRNA.98 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPNCRNA.98 BioGRID Interaction Datasets
Expression Viewer SPNCRNA.98 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPNCRNA.98 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPNCRNA.98 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPNCRNA.98 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPNCRNA.98 Polyadenylation Viewer (Gullerova lab)
pombeTV SPNCRNA.98 Transcriptome Viewer (Bähler Lab)
Cyclebase SPNCRNA.98 Cell Cycle Data
GEO SPNCRNA.98 GEO profiles
PInt SPNCRNA.98 Protein-Protein Interaction Predictor (Bähler Lab)
RfamRF00017Rfam hosted at the Wellcome Trust Sanger Institute
European Nucleotide ArchiveX15220ENA EMBL mapping

Literature for srp7

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014