srp7 (SPNCRNA.98)


Gene Standard Namesrp7 Characterisation Status
Systematic IDSPNCRNA.98 Feature TypencRNA
Synonymssrp Name Description
Product7SL signal recognition particle component Product Size499nt
Genomic Location Chromosome I, 4268566-4269064, 499nt

Ensembl Gene Location
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0006614SRP-dependent cotranslational protein targeting to membraneICGO:0005786PMID:283776414
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005786signal recognition particle, endoplasmic reticulum targetingIDAPMID:28377647
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationCell growth assaynot recorded (G155A, G156A, G160A)PECO:0000137, PECO:0000005PMID:13159541315
Cell growth assaynot recorded (G153A, G155A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaysrp7-C-159 (G159C)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-A-159,A-160 (G159A, G160A)PECO:0000137, PECO:0000005PMID:2657742
Cell growth assayG159U/A162C (G159U, A162C)PECO:0000137, PECO:0000005PMID:8390662
Cell growth assayG159U/A162U (G159U, A162U)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayA154C,G155A (A154C, G155A)PECO:0000005, PECO:0000126PMID:8382769
Cell growth assayA154G,G155A (A154G, G155A)PECO:0000005, PECO:0000126PMID:8382769
Cell growth assaySTL1-1 (GAAAC160UUCGG)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaySTL1-2 (GGAAA159CUUCG)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaynot recorded (U88G, nt84-88 deletion, 131 nucleotides inserted after nt83)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G72A, G78A, G100A, G107A, Gl12A, G141A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G153A, G155A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G160A, C164A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G155A, G156A, G160A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G160A, C164A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (139-144)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (159-161)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (159-161)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (118-120)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (118-120)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (139-144)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U88G, nt84 deletion, 8 nucleotides inserted after nt83)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A146U, G159U, nt148-150 deletion)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaysrp7-C-160 (G160C)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7::ura4+ (disruption)NullPECO:0000137PMID:2837648
Cell growth assaysrp7Δ-domIII (70-87, 137-204)Not specifiedPECO:0000126, PECO:0000005PMID:8041618
Cell growth assaysrp7-T-160 (G160T)PECO:0000137, PECO:0000005PMID:2657742
Cell growth assayD4E-1 (GC inserted after nt 158, GC inserted after nt 164)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayPTL2U (GAAAC160UUUCA)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayPTL2C (GAAAC160CUUCA)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayPTL1-2 (GAAA160CUUC)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaysrp7-TS-point (G107A, G112A)Not specifiedPECO:0000137, PECO:0000004PMID:8041618
Cell growth assayU158C/A166C (U158C, A166C)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayG159C/C164A (G159C, C164A)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayD4E-2 (G160C, GC inserted after nt 158, GC inserted after nt 164)PECO:0000005, PECO:0000137PMID:8390662
FYPO:0000080sensitive to coldCell growth assayG159A/C164U (G159A, C164U)PECO:0000137, PECO:0000005PMID:839066240
FYPO:0000082sensitive to heatCell growth assaysrp7-TS-point (G107A, G112A)Not specifiedPECO:0000137PMID:8041618138
FYPO:0000081sensitive to high osmolarity8
expressivity FYPO_EXT:0000001Cell growth assayG159C/C164G (G159C, C164G)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:8390662
expressivity FYPO_EXT:0000001Cell growth assayA162C/C164G (A162C, C164G)PECO:0000142, PECO:0000252, PECO:0000004, PECO:0000137PMID:8390662
expressivity FYPO_EXT:0000001Cell growth assayA154U (A154U)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:8382769
expressivity FYPO_EXT:0000001Cell growth assayG155A (G155A)PECO:0000137, PECO:0000142, PECO:0000252, PECO:0000004PMID:8382769
expressivity FYPO_EXT:0000001Cell growth assayG159U (G159U)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:8390662
expressivity FYPO_EXT:0000002Cell growth assaySTL2-1 (GGAAAC159CUUCGG)PECO:0000137, PECO:0000004, PECO:0000142, PECO:0000252PMID:8390662
expressivity FYPO_EXT:0000001Cell growth assaySTL1-3 (GAAA160UUCG)PECO:0000137, PECO:0000142, PECO:0000004, PECO:0000252PMID:8390662
expressivity FYPO_EXT:0000001Cell growth assayG159A (G159A)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:8390662
expressivity FYPO_EXT:0000002Cell growth assayPTL1-1 (GAAA160UUUC)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:8390662
expressivity FYPO_EXT:0000002Cell growth assayC164A (C164A)PECO:0000004, PECO:0000142, PECO:0000252, PECO:0000137PMID:8390662
expressivity FYPO_EXT:0000003Cell growth assaynot recorded (C180U, U inserted after nt 176)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:1315954
expressivity FYPO_EXT:0000001Cell growth assaysrp7-C-163,A-164 (A163C, G164A)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:2657742
expressivity FYPO_EXT:0000003Cell growth assaysrp7-A-159,C-161 (G159A, A161C)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:2657742
expressivity FYPO_EXT:0000002Cell growth assaysrp7-A-160 (G160A)PECO:0000142, PECO:0000137, PECO:0000004, PECO:0000252PMID:2657742
expressivity FYPO_EXT:0000002Cell growth assaysrp7-T-159,T-164 (G159T, C164T)PECO:0000004, PECO:0000142, PECO:0000252, PECO:0000137PMID:2657742
expressivity FYPO_EXT:0000002Cell growth assaysrp7-G-164 (C164G)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:2657742
expressivity FYPO_EXT:0000002Cell growth assaysrp7-T-164 (C164T)PECO:0000142, PECO:0000137, PECO:0000004, PECO:0000252PMID:2657742
expressivity FYPO_EXT:0000003Cell growth assaysrp7-C-163 (A163C)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:2657742
expressivity FYPO_EXT:0000002Cell growth assaysrp7-C-162,C-163 (A162C, A163C)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:2657742
expressivity FYPO_EXT:0000003Cell growth assaysrp7-T-163 (A163T)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:2657742
expressivity FYPO_EXT:0000003Cell growth assaysrp7-G-163 (A163G)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:2657742
Cell growth assaysrp7-A154U (A154U)Not specifiedPECO:0000252, PECO:0000004, PECO:0000137PMID:8041618
Cell growth assaysrp7-G4C (G4C)Not specifiedPECO:0000252, PECO:0000004, PECO:0000137PMID:8041618
expressivity FYPO_EXT:0000003Cell growth assayU157G/A165G (U157G, A165G)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:8390662
expressivity FYPO_EXT:0000003Cell growth assayG159U/C164A (G159U, C164A)PECO:0000137, PECO:0000004, PECO:0000252, PECO:0000142PMID:8390662
expressivity FYPO_EXT:0000003Cell growth assayA162 (A162)PECO:0000004, PECO:0000252, PECO:0000142, PECO:0000137PMID:8390662
expressivity FYPO_EXT:0000002Cell growth assayA166C (A166C)PECO:0000004, PECO:0000252, PECO:0000137, PECO:0000142PMID:8390662
FYPO:0001234slow vegetative cell population growthCell growth assaysrp7-A-159,C-161 (G159A, A161C)PECO:0000137, PECO:0000006PMID:265774254
Cell growth assaysrp7-A-159,C-161 (G159A, A161C)PECO:0000004, PECO:0000137PMID:2657742
Cell growth assaysrp7-A-159,C-161 (G159A, A161C)PECO:0000137, PECO:0000005PMID:2657742
FYPO:0002060viable vegetative cell populationCell growth assaySTL2-1 (GGAAAC159CUUCGG)PECO:0000137, PECO:0000005PMID:83906623760
Cell growth assaynot recorded (A175G)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assayA162C (A162C)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaysrp7-C-163 (A163C)PECO:0000006, PECO:0000137PMID:2657742
Cell growth assaysrp7-C-163 (A163C)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-G-163 (A163G)PECO:0000137, PECO:0000005PMID:2657742
Cell growth assaysrp7-G-164 (C164G)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-C-162,C-163 (A162C, A163C)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-A-160 (G160A)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-T-164 (C164T)PECO:0000137, PECO:0000005PMID:2657742
Cell growth assaysrp7-C-163,A-164 (A163C, G164A)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-T-159,T-164 (G159T, C164T)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-C-161 (A161C)PECO:0000137, PECO:0000005PMID:2657742
Cell growth assaysrp7-G-161 (A161G)PECO:0000137, PECO:0000005PMID:2657742
Cell growth assaynot recorded (G78A)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (U88G)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U70C)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (C77A)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (G100A, C103A, G112A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C69U)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U88G, UCGA inserted after nt84)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G226C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C180A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G181C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C180U)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C180G)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C174G)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A175G)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U101C)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (U173C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C180U, U inserted after nt 176)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G4C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G144C, G149C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C180A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaysrp7-G-164 (C164G)PECO:0000006, PECO:0000137PMID:2657742
Cell growth assaynot recorded (U133C, A135C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U119C, U126C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U101C, U140C)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (C69A, G127A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaysrp7-C-162,C-163 (A162C, A163C)PECO:0000137, PECO:0000006PMID:2657742
Cell growth assaynot recorded (G141A, C148A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G139A, G141A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C138G, A150G)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaysrp7-T-159,T-164 (G159T, C164T)PECO:0000137, PECO:0000006PMID:2657742
Cell growth assaysrp7-C-163,A-164 (A163C, G164A)PECO:0000006, PECO:0000137PMID:2657742
Cell growth assaysrp7-T-164 (C164T)PECO:0000006, PECO:0000137PMID:2657742
Cell growth assaysrp7-A-160 (G160A)PECO:0000137, PECO:0000006PMID:2657742
Cell growth assaysrp7-T-163 (A163T)PECO:0000004, PECO:0000137PMID:2657742
Cell growth assaysrp7-G-163 (A163G)PECO:0000137, PECO:0000004PMID:2657742
Cell growth assaysrp7-G-161 (A161G)PECO:0000006, PECO:0000137PMID:2657742
Cell growth assaysrp7-C-161 (A161C)PECO:0000137, PECO:0000006PMID:2657742
Cell growth assaynot recorded (C180A, G181A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaysrp7-G4C (G4C)Not specifiedPECO:0000005PMID:8041618
Cell growth assaynot recorded (C179U, C180U)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G4C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G100A, C103A, G112A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (C69U)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U70C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (U88G, nt84-88 deletion, 131 nucleotides inserted after nt83)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G72A, G78A, G100A, G107A, Gl12A, G141A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (C77A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G78A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (C69U, U70C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C69A, U70C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assayG159A (G159A)PECO:0000137, PECO:0000005PMID:8390662
Cell growth assayG159U (G159U)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayPTL1-1 (GAAA160UUUC)PECO:0000137, PECO:0000005PMID:8390662
Cell growth assaynot recorded (G182A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G226C)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (G60A, G61A)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaysrp7-T-163 (A163T)PECO:0000137, PECO:0000006PMID:2657742
Cell growth assaynot recorded (C180U)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (C180G)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaysrp7-G-163 (A163G)PECO:0000006, PECO:0000137PMID:2657742
expressivity FYPO_EXT:0000002Cell growth assaynot recorded (G156A, G159A)PECO:0000004, PECO:0000252, PECO:0000137, PECO:0000142PMID:1315954
Cell growth assaynot recorded (G156A, G159A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assayBP-Comp (U157G, U158C, A165G, A166C)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayU157G/A165G (U157G, A165G)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaynot recorded (G182A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G4A, G9A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G9A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assayG159A/C164U (G159A, C164U)PECO:0000137, PECO:0000005PMID:8390662
Cell growth assayC164A (C164A)PECO:0000137, PECO:0000005PMID:8390662
expressivity FYPO_EXT:0000001Cell growth assaynot recorded (G4A)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:1315954
Cell growth assayA166C (A166C)PECO:0000137, PECO:0000005PMID:8390662
Cell growth assayA165G (A165G)PECO:0000137, PECO:0000005PMID:8390662
Cell growth assayU158C (U158C)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaysrp7-A154U (A154U)Not specifiedPECO:0000005PMID:8041618
Cell growth assaynot recorded (A172U)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaysrp7-TS-point (G107A, G112A)Not specifiedPECO:0000005, PECO:0000137PMID:8041618
Cell growth assaynot recorded (G104A)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (G4A, G9A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G4A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U12A, U13A, U47A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U57C, U62C, U90C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A192C, G193C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (T(-5)C, T(-3)C, U88C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (T(-61)C, G(-75)C, U62C, U101C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U88G, UCGA inserted after nt84)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (U88G, U133C, A135C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U101C, A136C, G149C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C174G)PECO:0000004, PECO:0000137PMID:1315954
expressivity FYPO_EXT:0000003Cell growth assaynot recorded (G15A)PECO:0000252, PECO:0000142, PECO:0000137, PECO:0000004PMID:1315954
expressivity FYPO_EXT:0000003Cell growth assaynot recorded (U24C, U45C, U62C, U119C, G144C)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:1315954
expressivity FYPO_EXT:0000003Cell growth assaynot recorded (G139C, G144C, A162C)PECO:0000142, PECO:0000252, PECO:0000004, PECO:0000137PMID:1315954
expressivity FYPO_EXT:0000003Cell growth assaynot recorded (A163U, C169U6)PECO:0000252, PECO:0000142, PECO:0000004, PECO:0000137PMID:1315954
expressivity FYPO_EXT:0000003Cell growth assaynot recorded (G149A, G152A)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:1315954
expressivity FYPO_EXT:0000003Cell growth assaynot recorded (U167G)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:1315954
Cell growth assaynot recorded (G15A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U24C, U45C, U62C, U119C, G144C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G121C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C180U, U inserted after nt 176)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A149)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C138G, A150G)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U133C, A135C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (U119C, U126C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (U101C, U140C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C69A, G127A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (C69A, U70C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C69U, U70C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G60A, G61A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G141A, C148A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G139A, G141A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assayU157G (U157G)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayG159U/C164A (G159U, C164A)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaynot recorded (G9A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G15A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G4A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assayU157G/U158C (U157G, U158C)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assaynot recorded (U88G)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U167G)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (G149A, G152A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A163U, C169U6)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (G139C, G144C, A162C)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (U24C, U45C, U62C, U119C, G144C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G156A, G159A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U167G)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G149A, G152A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (A163U, C169U6)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G139C, G144C, A162C)PECO:0000137, PECO:0000005PMID:1315954
expressivity FYPO_EXT:0000001Cell growth assaynot recorded (G9A)PECO:0000004, PECO:0000142, PECO:0000137, PECO:0000252PMID:1315954
Cell growth assaynot recorded (G144C, G149C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C179U, C180U)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (C180A, G181A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A192C, G193C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (T(-5)C, T(-3)C, U88C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U12A, U13A, U47A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U57C, U62C, U90C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U88G, U133C, A135C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U101C, A136C, G149C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (T(-61)C, G(-75)C, U62C, U101C)PECO:0000137, PECO:0000005PMID:1315954
expressivity FYPO_EXT:0000001Cell growth assaynot recorded (G4A, G9A)PECO:0000142, PECO:0000252, PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaysrp7-C-163 (A163C)PECO:0000137, PECO:0000004PMID:2657742
Cell growth assaysrp7-C-162,C-163 (A162C, A163C)PECO:0000004, PECO:0000137PMID:2657742
Cell growth assaysrp7-A-160 (G160A)PECO:0000137, PECO:0000004PMID:2657742
Cell growth assaysrp7-T-159,T-164 (G159T, C164T)PECO:0000137, PECO:0000004PMID:2657742
Cell growth assaysrp7-G-164 (C164G)PECO:0000004, PECO:0000137PMID:2657742
Cell growth assaysrp7-T-164 (C164T)PECO:0000137, PECO:0000004PMID:2657742
Cell growth assaysrp7-C-161 (A161C)PECO:0000137, PECO:0000004PMID:2657742
Cell growth assaysrp7-T-163 (A163T)PECO:0000005, PECO:0000137PMID:2657742
Cell growth assaysrp7-C-163,A-164 (A163C, G164A)PECO:0000004, PECO:0000137PMID:2657742
Cell growth assaysrp7-G-161 (A161G)PECO:0000137, PECO:0000004PMID:2657742
Cell growth assaynot recorded (A149)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (G149A)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A172U)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A170C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (A170C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G118A)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (G144C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U142C)PECO:0000137, PECO:0000004PMID:1315954
Cell growth assaynot recorded (U142C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G121C)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G149A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G144C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U101C)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (U173C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G118A)PECO:0000137, PECO:0000005PMID:1315954
Cell growth assaynot recorded (G104A)PECO:0000005, PECO:0000137PMID:1315954
Cell growth assaynot recorded (G181C)PECO:0000004, PECO:0000137PMID:1315954
Cell growth assayD4E-3 (GC inserted after nt 164)PECO:0000005, PECO:0000137PMID:8390662
Cell growth assayA162C/C164G (A162C, C164G)PECO:0000005, PECO:0000137PMID:8390662

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002133abolished RNA binding8
affecting srp7Electrophoretic mobility shift assay datasrp7-G4C (G4C)Not specifiedPECO:0000004, PECO:0000252, PECO:0000137PMID:8041618
affecting srp7Electrophoretic mobility shift assay datasrp7-TS-point (G107A, G112A)Not specifiedPECO:0000004PMID:8041618
affecting srp7Electrophoretic mobility shift assay datasrp7-A154U (A154U)Not specifiedPECO:0000137, PECO:0000252, PECO:0000004PMID:8041618
FYPO:0001645decreased protein binding29
affecting srp7
affecting srp54
Co-immunoprecipitation experimentA166C (A166C)PECO:0000137, PECO:0000005PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentsrp7-A-159,A-160 (G159A, G160A)PECO:0000137, PECO:0000005PMID:8382769
affecting srp54
affecting srp7
Co-immunoprecipitation experimentG159A (G159A)PECO:0000137, PECO:0000005PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentSTL1-3 (GAAA160UUCG)PECO:0000137, PECO:0000005PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentG156A (G156A)PECO:0000137, PECO:0000005PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentnot recorded (U158C, A166C)PECO:0000137, PECO:0000005PMID:8382769
affecting srp54
affecting srp7
Co-immunoprecipitation experimentG155A (G155A)PECO:0000137, PECO:0000005PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentA154U (A154U)PECO:0000005, PECO:0000137PMID:8382769
FYPO:0000825increased RNA level during vegetative growth104
affecting srp7Transcript expression level evidencesrp7-A-159,A-160 (G159A, G160A)PECO:0000137, PECO:0000005PMID:2657742
affecting srp7Transcript expression level evidencesrp7-C-160 (G160C)PECO:0000137, PECO:0000005PMID:2657742
affecting srp7Transcript expression level evidencesrp7-T-160 (G160T)PECO:0000005, PECO:0000137PMID:2657742
affecting srp7Transcript expression level evidencesrp7-C-159 (G159C)PECO:0000005, PECO:0000137PMID:2657742
FYPO:0001042inviable after spore germination, single or double cell divisionMicroscopysrp7::ura4+ (disruption)NullPMID:283764895
FYPO:0002151inviable sporeCell growth assaysrp7.1 (disruption (srp7::m-Tn3(Leu2)))NullPMID:16453822457
FYPO:0000703normal protein binding30
affecting srp7
affecting srp54
Co-immunoprecipitation experimentA161C (A161C)PECO:0000005, PECO:0000137PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentSTL2-1 (GGAAAC159CUUCGG)PECO:0000005, PECO:0000137PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentG159C,C164G (G159C, C164G)PECO:0000137, PECO:0000005PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentU157G,A165G (U157G, A165G)PECO:0000137, PECO:0000005PMID:8382769
affecting srp7
affecting srp54
Co-immunoprecipitation experimentG160A (G160A)PECO:0000137, PECO:0000005PMID:8382769
Target Of
OntologyRelationshipGeneProductReference
FYPO affected by mutation in pac1 double-strand-specific ribonuclease Pac1 PMID:2406130
FYPO affected by mutation in smn1 SMN family protein Smn1 PMID:23221635
FYPO affected by mutation in srp7 7SL signal recognition particle component PMID:8382769
FYPO affected by mutation in srp7 7SL signal recognition particle component PMID:2657742
FYPO affected by mutation in srp7 7SL signal recognition particle component PMID:8041618
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
142685664269064
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
1300during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
280during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Orthologs

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
srp54signal recognition particle subunit Srp54 Co-purificationPMID:8041618
smn1SMN family protein Smn1 Affinity Capture-RNAPMID:23221635
External References
Database Identifier Description
NBRP SPNCRNA.98 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPNCRNA.98 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPNCRNA.98 BioGRID Interaction Datasets
Expression Viewer SPNCRNA.98 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPNCRNA.98 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPNCRNA.98 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPNCRNA.98 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPNCRNA.98 Polyadenylation Viewer (Gullerova lab)
pombeTV SPNCRNA.98 Transcriptome Viewer (Bähler Lab)
Cyclebase SPNCRNA.98 Cell Cycle Data
GEO SPNCRNA.98 GEO profiles
PInt SPNCRNA.98 Protein-Protein Interaction Predictor (Bähler Lab)
RfamRF00017Rfam hosted at the Wellcome Trust Sanger Institute
European Nucleotide ArchiveX15220ENA EMBL mapping

Literature for srp7

Search: Europe PMC or PubMed

Release Version: PomBase:22_44 - 08 Jul 2014