Gene Coordinate Changes

Systematic ID Standard name Comments Reference Date
SPAC19B12.05c   additional exon pers. comm. Val Wood 2003-04-22
SPAC11E3.03 pcs1 N terminal truncated, removed exon 9067..9103, truncated from 9149 to 9211 start PMID:12689592 2003-04-13
SPCC320.13c ark1 trimmed to 2nd met PMID:12676091 2003-01-08
SPBC6B1.09c nbs1 prediction extended by 4 N- terminal exons, this identified FHA domain pers. comm. Val Wood 2002-04-22
SPBC6B1.09c nbs1 additional intron 25664..25705, and exon extension 25974..25988 pers. comm. Charly Chahwan 2003-03-07
SPAC16A10.04 rho4 N-terminal exon replaced PMID:12653963 2003-03-31
SPAC23C4.08 rho3 N-terminal exon removed PMID:12653963 2003-03-31
SPBP23A10.04 apc2 coordinates updated additional in-frame splice at 5325, 5371 pers. comm. Hyun-Joo Yoon 2003-02-04
SPCC1442.13c   C terminal exon added ; old coordinates (26947..27936); new exon extends G-patch domain pers. comm. Val Wood 2002-04-15
SPBC1604.17c   previous coordinates (8945..8971, 9475..10455, 10528..10851) pers. comm. Val Wood 2002-04-29
SPAC1296.04   has 2 additional N-terminal exons pers. comm. Val Wood  
SPAC23C11.10   found 3 additional C-terminal exons by eye pers. comm. Val Wood 2002-06-18
SPBC1347.05c   new C-terminal exon pers. comm. Val Wood 2002-10-11
SPAC2F3.12c   created from the C-terminal of SPAC2F3.13c pers. comm. Val Wood 2002-06-30
SPAC2F3.13c   split to create SPAC2F3.13c and SPAC2F3.12c pers. comm. Val Wood 2002-06-30
SPAC22F3.03c rdh54 4th exon extended by altering acceptor in intron 3 cosmid coordinates 34092-33923 pers. comm. Mike Catlett 2003-05-09
SPAC29A4.14c   N-terminal extended pers. comm. Val Wood 2002-09-11
SPAC31G5.07   N terminal extended to use longest ORF in the absence of homology pers. comm. Henar Valdivieso Montero 2003-01-08
SPAC19B12.06c   added exon 18153..18218 pers. comm. Val Wood 2003-04-22
SPAC2F3.13c   annotated as SPAC2F3.13c putative tRNA-ribosyltransferase, but actually a gene merge. Split to create SPAC2F3.13c the tRNA-ribosyltransferase and new CDS SPAC2F3.17c was created from the C-terminal pers. comm. Val Wood 2003-06-30
SPAC29B12.08   new N-terminal exon pers. comm. Aengus Stewart 2003-09-09
SPAC959.05c   extended N-terminal to first methionine pers. comm. Val Wood 2003-09-14
SPBC15D4.02   trimmed N terminal 28.10.03; looked overextended as large low complexity region in front in zinc finger which is usually N-term; alignment looks better pers. comm. Val Wood 2003-10-28
SPCC1223.15c spc19 4 amino acid extension at N-terminus PMID:16079914 2005-09-09
SPAC17H9.20 psc3 added intron at 37250..37297 PMID:16207082 2005-10-10
SPAC31G5.06   added N-teminal exon to extend prediction pers. comm. Val Wood 2005-11-01
SPAC9.05 fml1 second intron acceptor extended by 15 bp pers. comm. Anke Schürer 2006-01-19
SPBC3B9.22c dad4 added new C-terminal exon based on Pfam protein family Pfam 2006-02-01
SPCC4G3.05c mus81 added N terminal exon pers. comm. Fred Kippert 2006-02-17
SPAC1D4.11c lkh1 lengthened to 690 a.a. PMID:12565823 2006-04-12
SPBCPT2R1.08c tlh2 truncated to 1919 a.a.; removed truncated version of a malate transporter fused to gene, not known whether these residues are included in translation pers. comm. Liew Li Phing 2006-04-13
SPAC6G9.13c bqt1 Additional C terminal exon PMID:16615890 2006-05-03
SPAC21E11.05c cyp8 Single base insertion allowed first 2 exons to be merged and extended (GAGT[G]GCA) pers. comm. Trevor Pemberton (via Ivo Pedruzzi, UniProt) 2006-05-22
SPCPJ732.03 meu15 new coordinates as per publication PMID:11376151 2006-06-12
SPCC4B3.05c hem12 Coordinates updated from join(28064..28097, 28155..28189, 28238..28816, 28866..29330) to join(28064..28097, 28155..28189, 28236..28260, 28308..28816, 28866..29330). Improves Homology pers. comm. Val Wood 2006-06-12
SPAC12D12.09 rev7 added new exon to insert KCIDIFGEF pers. comm. Nicole Kosarek 2006-08-01
SPAC12D12.09 rev7 truncated penultimate exon to remove GIN pers. comm. Nicole Kosarek 2006-08-01
SPBC30B4.08 eri1 gene structure updated as per PMID:16797182 PMID:16797182 2006-09-22
SPAPB17E12.08   coordinates updated from join(9968..9990, 10070..10442) to join(9609..9623, 9699..9761, 9937..9986, 10070..10442). Improved homology pers. comm. Val Wood 2006-12-12
SPCC1223.10c eaf1 Added exons as per PMID:17150956 PMID:17150956 2006-12-14
SPBP22H7.09c mis15 updated sequence coordinates as per PMID:15369671 PMID:15369671 2007-01-05
SPAC23D3.08 usp108 final exon removed pers. comm. Val Wood 2007-02-05
SPNCRNA.82 mrp1 coordinates updated from 1234705..1234837 to 1234451..1234849, upon realisation that this corresponded to RNase MRP pers. comm. Val Wood 2007-02-07
SPAC13G7.07   changed second exon 3' boundary and added C-terminal exons PMID:17310250 2007-03-23
SPAC29E6.04 nnf1 Sequence frameshifted at 4410192, new coordinates give an N terminal extension from 4410194..4410391 (NOTE: Still needs resequencing and underlying sequence changing) PMID:17035632 2007-05-16
SPAC23C4.04c   altered to include stop codon and trimmed to methionine pers. comm. Val Wood 2007-06-19
SPBC409.12 stn1 N-terminal extended by 2 exons pers. comm. C. Chahwan 2007-07-06
SPAC9E9.02   altered to include stop codon pers. comm. Val Wood 2007-07-19
SPAC22F8.07c rtf1 Two in frame splices added EMBL:AJ627891 2007-08-28
SPCC1020.11c   coordinates updated from 757494..757802 to join(757365..757424, 757506..757802) Solexa transcript data 2007-10-12
SPCC1529.01   new exon added; coordinates changed from join(237554..237923, 237975..238080, 238139..238533, 238588..239105) to join(237554..237923, 237975..238080, 238139..238533, 238588..239092, 239151..239250) Solexa transcript data 2007-10-12
SPBPB2B2.07c   coordinates updated from 4474434..4474931 to join(4474145..4474403, 4474438..4474931) Solexa transcript data 2007-11-22
SPAC6G9.16c   coordinates changed from 3278951..3279349 to join(3278951..3279367, 3279420..3279539, 3279683..3279819, 3279865..3279985) Solexa transcript data 2007-11-22
SPBC354.07c   additional exon added; coordinates updated from 558335..559225, 559273..559474, 559942..560028, 560151..560170 to 558335..559225, 559273..559474, 559942..560028, 560151..560163, 560231..560246 Solexa transcript data 2007-11-28
SPAC631.02   coordinates updated from 2107940..2110123 to 2107470..2107515, 2107860..2110123 Solexa transcript data 2007-11-28
SPCC18.18c   coordinates changed from 1988631..1990079 to 1988631..1990100, 1990630..1990722 Solexa transcript data 2007-11-29
SPAC16A10.06c   revised intron structure/original intron absent from Solexa data; coordinates updated from 3089583..3089996, 3090112..3090285, 3090533..3090697 to 3089583..3090047, 3090112..3090285, 3090533..3090697 Solexa intron data 2007-12-02
SPAC17C9.08   revised intron structure/original intron absent from Solexa data and unsupported from mRNA data so final exon deleted; coordinates changed from 4484758..4484804, 4484843..4485274, 4485350..4485596, 4485713..4485994 to 4484835..4485274, 4485350..4485596, 4485713..4485994 Solexa intron data 2007-12-02
SPAPB17E12.08   revised intron structure/original intron absent from Solexa data so small N-term exon deleted; coordinates changed from 1279492..1279506, 1279582..1279644, 1279820..1279869, 1279953..1280325 to 1279573..1279644, 1279820..1279869, 1279953..1280325 Solexa intron data 2007-12-02
SPAPB1A10.15   revised intron structure/original intron absent from Solexa data so small C-term exon deleted; coordinates changed from 1892554..1892640, 1892926..1893060, 1893098..1893504, 1893585..1893618 to 1892554..1892640, 1892926..1893060, 1893098..1893694 Solexa intron data 2007-12-02
SPAC56F8.05c   revised intron structure/original intron absent from Solexa data. N terminal exon unsupported and had no branch site so exon deleted; coordinates changed from 1134697..1135061, 1135195..1135402, 1135517..1135684, 1135729..1135776, 1135932..1135970, 1136111..1136170 to 1134697..1135061, 1135195..1135402, 1135517..1135684, 1135729..1135776, 1135932..1136003 Solexa intron data 2007-12-02
SPCC1450.09c   original intron absent from Solexa data; C terminal exon unsupported so exon deleted; coordinates changed from 1741451..1741481, 1741589..1743459 to 1741588..1743459 Solexa intron data 2007-12-02
SPCC736.05 wtf7 removed final exon, unsupported by Solexa intron data; coordinates changed from 320617..320755, 320964..321335, 321387..321509, 321554..321582 to 320617..320755, 320964..321335, 321387..321523 Solexa intron data 2007-12-02
SPAC227.11c   removed final exon, unsupported by Solexa data; coordinates changed from 514434..514489, 514557..515082, 515222..515482, 515534..515659 to 514552..515082, 515222..515482, 515534..515659 Solexa intron data 2007-12-02
SPBC21B10.02   intron unsupported by Solexa transcript data, removed final exon; coordinates changed from 1669624..1669695, 1669737..1670144 to 1669719..1670144 Solexa intron data 2007-12-02
SPBC21C3.07c   removed final exon, not supported by Solexa transcript data; coordinates changed from 3807714..3807783, 3807963..3808607, 3808665..3808795 to 3807920..3808607, 3808665..3808795 Solexa intron data 2007-12-02
SPBC29A3.07c   final exon deleted, not supported by Solexa intron data; homology improved; coordinates changed from 2050069..2050183, 2050304..2050358, 2050452..2050695 to 2050258..2050358, 2050452..2050695 Solexa intron data 2007-12-02
SPBC1604.17c   updated, better donor (GTAATA instead of GTTAGT); original intron prediction not supported by Solexa data; coordinates changed from 3900047..3900121, 3900166..3901146, 3901219..3901542 to 3900047..3900121, 3900166..3901170, 3901219..3901542 Solexa intron data 2007-12-02
SPBC16A3.14   final exon deleted, not supported by Solexa intron data; coordinates changed from 4270907..4270939, 4271137..4271937 to 4271131..4271937 Solexa intron data 2007-12-02
SPAC23D3.08 usp108 final exon deleted, not supported by Solexa intron data; coordinates changed from 4352514..4353359, 4353410..4353573, 4353623..4353761 to 4352514..4353359, 4353410..4353577 Solexa intron data 2007-12-02
SPAC4C5.01   altered intron 5 to improve donor and acceptor, improves homology; coordinates changed from 1192545..1192592, 1192662..1192704, 1192779..1192841, 1192916..1193010, 1193062..1193175, 1193236..1193613 to 1192545..1192592, 1192662..1192704, 1192779..1192841, 1192916..1193010, 1193062..1193145, 1193197..1193613 Solexa intron data 2007-12-03
SPBC16H5.04   altered intron 2 donor and acceptor, improved homology; coordinates changed from 2293393..2293824, 2293938..2294039, 2294087..2294125 to 2293393..2293775, 2293877..2294039, 2294087..2294125 Solexa intron data 2007-12-03
SPBC11B10.03   removed N-teminal exon, poor donor, did not improve homology; coordinates changed from 1490376..1490423, 1490593..1491747 to 1490611..1491747 Solexa intron data 2007-12-03
SPAPB1A10.03   SPAPB1A10.03 split to create SPAPB1A10.03 and SPAPB1A10.16; new coordinates 1863363..1863381, 1863434..1863762 and 1863972..1864388 Solexa intron data 2007-12-03
SPCC1494.02   2 C-terminal exons removed, not supported by homology; coordinates changed from 2317988..2318068, 2318200..2318244, 2318398..2318508, 2318579..2318676, 2318903..2318966 to 2318335..2318508, 2318579..2318676, 2318903..2318966 Solexa intron data 2007-12-03
SPCC1442.13c   deleted final exon, improved homology; coordinates changed from 1791196..1791285, 1791376..1791909 to 1791346..1791909 Solexa intron data 2007-12-03
SPCC622.14   altered donor for intron 3, improved donor consensus; coordinates changed from 1427098..1427310, 1427632..1427709, 1427788..1428180, 1428277..1428522 to 1427098..1427310, 1427632..1427709, 1427788..1428216, 1428277..1428522 Solexa intron data 2007-12-03
SPAC823.04   changed first intron acceptor, which gave a different n-term exon and improved homology; coordinates changed from 2587859..2587901, 2588085..2588620 to 2587729..2587897, 2588085..2588620 Solexa intron data 2007-12-03
SPAC688.08   deleted final exon, not supported by Solexa data; coordinates changed from 3123163..3125057, 3125099..3126310, 3126356..3126631, 3126671..3126989 to 3123163..3125057, 3125099..3126310, 3126356..3126653 Solexa intron data 2007-12-03
SPAC29E6.03c   changed internal splice site, better intron, slightly improved homology; deleted final small exon, unsupported; coordinates changed from 4405871..4405889, 4405994..4407291, 4407447..4409096, 4409171..4409338 to 4405990..4407375, 4407447..4409096, 4409171..4409338 Solexa intron data 2007-12-03
SPAC806.09c   changed from 251726..252337, 252392..252752, 252945..252958 to 251726..252337, 252392..252752, 253590..253630 Solexa transcript data 2007-12-07
SPBC19G7.06   coordinates changed from 2359429..2359479, 2359547..2359693, 2359845..2359928, 2360064..2361092 to 2359429..2359479, 2359547..2359693, 2359845..2359928, 2360001..2361092 Christopher J. McInerny 2007-12-07
SPBC16D10.10   exon 4 splice altered; coordinates changed from 3618117..3618179, 3618228..3618617, 3618658..3618702, 3618747..3618920, 3619065..3619321, 3619366..3619540 to 3618117..3618179, 3618228..3618617, 3618658..3618702, 3618747..3618971, 3619077..3619321, 3619366..3619540 Solexa intron data 2007-12-07
SPBC16E9.16c   This CDS has 2 frameshifts in GeneDB at present; coordinates changed from 1947985..1949069 , 1949218..1950058 , 1950253..1950255 to 1947985..1948953, 1948955..1950050, 1950053..1950255 PMID:18079165 2007-01-03
SPBC16C6.02c   complement(join(4322221..4322742, 4322970..4331555, 4331641..4331793, 4331856..4331968, 4332007..4332028)) was split into complement(join(4322829..4331555, 4331641..4331793, 4331856..4331968, 4332007..4332028)) and new gene SPBC16C6.14 - complement(4322221..4322622) PMID:18367542 2008-04-02
SPAC13G6.04 tim8 old join(180423..180528, 180586..180776), new join(180423..180528, 180586..180721, 180890..180911); added new 3' intron/exon, improved homology Solexa transread data 2008-05-02
SPAC1639.01c   old complement(join(251726..252337, 252392..252752, 253590..253630)), new complement(join(251726..251745, 251863..252337, 252392..252752, 253590..253630)); added new 3' intron/exon Solexa transread data 2008-05-02
SPAC630.11 vps55 old join(366801..366817, 366873..366891, 366968..367040, 367123..367189, 367293..367348, 367395..367531), new join(366801..366817, 366873..366891, 366968..367040, 367105..367189, 367293..367348, 367395..367531); changed internal intron acceptor, improved homology Solexa transread data 2008-05-02
SPAC24H6.01c   old join(490016..490262, 490338..490771, 490812..490931, 490979..491149, 491186..491980), new join(490016..490262, 490338..490771, 490812..490931, 490979..491149, 491186..491858, 491905..492011); added new 3' intron/exon, improved homology Solexa transread data 2008-05-02
SPAC23C4.04c   old 1036033..1036347, new join(1036033..1036342, 1036397..1036455); added intron Solexa transread data 2008-05-02
SPAC1A6.03c   old complement(1070139..1072013), new complement(join(1070061..1070138, 1070205..1072013)); new 3' intron/exon, improved homology Solexa transread data 2008-05-02
SPAC56F8.04c coq2 old complement(1133226..1134302), new complement(join(1133226..1134283, 1134332..1134356)); added 5' intron/exon Solexa transread data 2008-05-02
SPAPB17E12.08   old join(1279573..1279644, 1279820..1279869, 1279953..1280325), new join(1279573..1279779, 1279820..1279869, 1279953..1280325); changed first donor to make n-terminal exon longer, improved homology Solexa transread data 2008-05-02
SPAC9.06c   old complement(join(1473692..1473885, 1473939..1474105, 1474153..1474212, 1474264..1474341, 1474460..1474539)), new complement(join(1473692..1473885, 1473939..1474105, 1474153..1474212, 1474264..1474341, 1474381..1474404, 1474460..1474539)); added new exon (2nd) improved homology Solexa transread data 2008-05-02
SPAC17A5.02c dbr1 old complement(join(1754109..1754310, 1754350..1755118, 1755164..1755285, 1755331..1755638)), new complement(join(1754033..1754145, 1754186..1754310, 1754350..1755118, 1755164..1755285, 1755331..1755638)); added new 5'intron/exon, now agrees with published date Solexa transread data 2008-05-02
SPAPB1A10.16   old 1863972..1864388, new join(1863972..1864360, 1864415..1864457); added new 3' intron/exon Solexa transread data 2008-05-02
SPAC823.04   old 2587729..2587897 , 2588085..2588620, new join(2587729..2587897, 2588106..2588620); altered to use valid acceptor Solexa transread data 2008-05-02
SPAC823.09c   old complement(join(2594922..2595693, 2595734..2595819)), new complement(join(2594777..2594913, 2594966..2595693, 2595734..2595819)); added new 3' intron/exon Solexa transread data 2008-05-02
SPAPB2B4.06   old join(2722735..2723210, 2723273..2723300, 2723349..2723582), new join(2722735..2723210, 2723273..2723300, 2723349..2723559, 2723608..2723660); added new 3' intron/exon, improved homology Solexa transread data 2008-05-02
SPAC16E8.12c   old complement(join(3523136..3523644, 3524027..3524030)), new complement(join(3523136..3523644, 3523925..3523996, 3524044..3524098)); added 2 5' exons Solexa transread data 2008-05-02
SPAC15A10.10   old join(3697508..3697752, 3697795..3698368, 3698421..3698527, 3698570..3699538, 3699582..3699837), new join(3697508..3697752, 3697795..3698368, 3698421..3698527, 3698570..3699310, 3699359..3699538, 3699582..3699837); added in frame intron Solexa transread data 2008-05-02
SPAC1556.01c rad50 old complement(join(3791855..3792229, 3792267..3795557, 3795601..3795684, 3795734..3795856)), new complement(join(3791831..3791851, 3791891..3792229, 3792267..3795557, 3795601..3795684, 3795734..3795856)); added small 3' intron and exon Solexa transread data 2008-05-02
SPAC1556.03 azr1 old join(3799244..3799680, 3799731..3800160), new join(3799244..3799680, 3799731..3800135, 3800184..3800241); added new 5' intron and exon/improved homology Solexa transread data 2008-05-02
SPAC1F12.08   old join(3817464..3817803, 3817851..3817991, 3818035..3818543), new join(3817464..3817803, 3817851..3817991, 3818035..3818130, 3818170..3818543); added new intron, inframe splice in final exon, improved homology Solexa transread data 2008-05-02
SPAC2F3.18c   old 3942398..3942730 new 3942299..3942364, 3942506..3942730; added small N term in frame intron Solexa transread data 2008-05-02
SPAC2C4.11c rpb28 old complement(4278729..4279505), new complement(join(4278729..4279405, 4279457..4279505)); added small N term in frame intron Solexa transread data 2008-05-02
SPAC30.03c tsn1 old join(4394707..4394741, 4394799..4394967, 4395010..4395092, 4395131..4395491, 4395530..4395592), new complement(join(4394707..4394741, 4394799..4394967, 4395010..4395092, 4395131..4395367, 4395416..4395491, 439 5530..4395592)); added in-frame intron to (previous) 2nd exon, improved homology Solexa transread data 2008-05-02
SPAC30C2.05 erv14 old complement(join(4687483..4688462, 4688513..4688831)), new complement(join(4687388..4687477, 4687522..4688462, 4688513..4688831)); added new 5' intron/exon, improved homology Solexa transread data 2008-05-02
SPAC144.17c   old complement(join(4687483..4688462, 4688513..4688831)), new complement(join(4687388..4687477, 4687522..4688462, 4688513..4688831)); added 3' intron and exon, improved homology Solexa transread data 2008-05-02
SPAC4F10.08 mug126 old join(4844855..4845824, 4845863..4846203), new join(4844855..4845824, 4845863..4846063, 4846104..4846129); added new 3' intron/exon Solexa transread data 2008-05-02
SPAC890.07c rmt1 old complement(join(5016072..5016215, 5016262..5016596, 5016649..5016943, 5016994..5017059, 5017138..5017252, 5017421..5017433, 5017700..5017703, 5017782..5017829)), new complement(join(5016020..5016026, 5016076..5016215, 5016262..5016596, 5016649..5016943, 5016994..5017059, 5017138..5017252, 5017421..5017433, 5017700..5017703, 5017782..5017829); added small N terminal exon, which added a single conserved cysteine Solexa transread data 2008-05-02
SPAC22E12.10c etp1 old complement(5037208..5039103), new complement(join(5037208..5037446, 5037492..5039103)); added in-frame splice Solexa transread data 2008-05-02
SPBC106.05c tim11 old complement(join(383527..383612, 383703..383874, 383980..384012)), new complement(join(383527..383612, 383703..383874, 383940..383960)); changed 5' exon Solexa transread data 2008-05-02
SPBC582.04c   old complement(join(423269..423598, 423669..423738, 423782..423871, 423912..424373, 424424..424872, 424921..425160, 425223..425350, 425410..425446)), new complement(join(423269..423598, 423669..423738, 423782..423871, 423912..424373, 424424..424692, 424747..424872, 424921..425160, 425223..425350, 425410..425446)); added inframe intron to (existing) exon 3 Solexa transread data 2008-05-02
SPBC947.03c   old 676629..676931, new join(676629..676908, 677057..677127); added 5' inton/exon, improved homology Solexa transread data 2008-05-02
SPBPJ4664.05   old 706175..706666, new join(705932..706077, 706141..706666); added new 5' intron and exon, improved homology Solexa transread data 2008-05-02
SPBC4.02c   old complement(join(1185617..1186640, 1186738..1186846, 1187087..1187324)), new complement(join(1185617..1186640, 1186738..1186846, 1187087..1187162, 1187220..1187324)); added inframe splice to first (existing) exon, improved homology Solexa transread data 2008-05-02
SPBC8D2.17   old 1390183..1391238, new join(1390183..1391093, 1391147..1391222); added new 3' intron/exon Solexa transread data 2008-05-02
SPBC4.02c   old complement(join(2369064..2369160, 2369246..2369416, 2369455..2371243, 2371351..2371451, 2371507..2371583)), new complement(join(2369064..2369190, 2369246..2369416, 2369455..2371243, 2371351..2371451, 2371507..2371583)); changed accceptor for final intron, improved homology Solexa transread data 2008-05-02
SPBP4H10.12   old join(2895855..2895863, 2896001..2896507), new join(2895855..2895863, 2896001..2896459, 2896516..2896587); added new 3' intron/exon, improved homology Solexa transread data 2008-05-02
SPBC2A9.07c   old complement(2959078..2959902), new complement(join(2959078..2959129, 2959172..2959902)); added inframe intron, improved homology Solexa transread data 2008-05-02
SPBC2D10.15c   old complement(join(2995324..2995579, 2995619..2995923, 2995971..2996066)), new complement(join(2995324..2995497, 2995534..2995579, 2995619..2995923, 2995971..2996066)); altered first intron, added in frame intron, improved homology Solexa transread data 2008-05-02
SPBC2D10.16   old join(2996452..2996463, 2996509..2996904), new join(2996452..2996463, 2996509..2996687, 2996738..2996879); added new intron in second exon, which created a new 3rd exon, and identified homology with Cenp-S (was previously sequence orphan) Solexa transread data 2008-05-02
SPBC16D10.02 trm11 old join(3588806..3589595, 3589639..3589803, 3589845..3590123, 3590163..3590287), new join(3588806..3589595, 3589639..3589803, 3589845..3590123, 3590163..3590278, 3590327..3590386); added new 3' intron/exon Solexa transread data 2008-05-02
SPBC13G1.04c   old complement(3732941..3733762), new complement(join(3732806..3732930, 3732994..3733762)); added new 3' intron and exon, improved homology Solexa transread data 2008-05-02
SPBC31F10.12   old join(3773353..3773525, 3773581..3773678, 3773795..3773999, 3774059..3774116, 3774192..3774212), new join(3773308..3773318, 3773373..3773525, 3773581..3773678, 3773795..3773999, 3774059..3774116, 3774192..3774212); added new 5' intron and exon Solexa transread data 2008-05-02
SPBC21C3.07c   old complement(join(3807920..3808607, 3808665..3808795), new complement(join(3807714..3807783, 3807831..3807891, 3807946..3808607, 3808665..3808795)); added two 3' exons Solexa transread data 2008-05-02
SPBPB2B2.18   old join(4502439..4502463, 4502712..4502857, 4503068..4503286, 4503527..4503664), new join(4502692..4502725, 4502787..4502857, 4503068..4503286, 4503527..4503664); changed 5' intron/exon Solexa transread data 2008-05-02
SPCC736.12c mmi1 old complement(join(338026..338178, 338232..338347, 338395..339354, 339483..339567)), new complement(join(337829..337985, 338030..338178, 338232..338347, 338395..339354, 339483..339567); added 3' exon, improved homology Solexa transread data 2008-05-02
SPCC16C4.01 sif2 old join(658832..659139, 659223..659488, 659567..659628, 659709..660413), new join(658832..659139, 659223..659488, 659567..659628, 659709..660197, 660298..660322); added 3' intron which changed frame of final exon, shorter product, improved homology Solexa transread data 2008-05-02
SPCC16C4.16c   old complement(join(697862..698127 , 698180..698399)), new complement(join(697605..697752, 697875..698127, 698180..698399)); added 3' intron/exon, improved homology Solexa transread data 2008-05-02
SPCC1020.11c   old join(757365..757424, 757506..757802), new join(757365..757424, 757506..757761, 757851..757861); added 3'intron/exon Solexa transread data 2008-05-02
SPCC1442.08c cox17 old complement(join(1781505..1781563, 1781637..1781744, 1781830..1781914)), new complement(join(1781505..1781563, 1781637..1781744, 1781830..1781855, 1781920..1781935, 1781981..1782032)); added 2 small 5' exons, improved homology Solexa transread data 2008-05-02
SPCC1620.09c tfg1 old complement(join(2161527..2162363, 2162405..2162500, 2162584..2163123)), new complement(join(2161331..2161515, 2161565..2162363, 2162405..2162500, 2162584..2163123)); added 5' exon, improved homology Solexa transread data 2008-05-02
SPCC1620.10 cwf26 old 2163205..2164118, new join(2163205..2164118, 2164159..2164165); added 3' exon encoding single methionine Solexa transread data 2008-05-02
SPAC15A10.12c   old complement(3709451..3709804), new complement(join(3709206..3709346, 3709499..3709804)); Solexa transread data 2008-05-02
SPAPB18E9.01   old join(3974310..3974485, 3974541..3974629, 3974674..3974775, 3974879..3975132, 3975193..3975429, 3975485..3975832, 3975882..3975983), new join(3974310..3974485, 3974541..3974629, 3974674..3974775, 3974879..3975132, 3975193..3975429, 3975485..3975832, 3975882..3975962, 3976014..3976079); added small 3' exon, improved homology Solexa transread data 2008-05-02
SPBC16D10.10   old join(3618117..3618179, 3618228..3618617, 3618658..3618702, 3618747..3618971, 3619077..3619321, 3619366..3619540), new join(3618117..3618179, 3618228..3618617, 3618658..3618702, 3618747..3618918, 3618956..3619071, 3619113..3619321, 3619366..3619540); changed 2 introns (existing 4 and 5) to create a new exon 5, improved homology Solexa transread data 2008-05-02
SPAC1093.03   old join(4613627..4613686, 4613723..4614081, 4614152..4614378, 4614438..4614954, 4614996..4616331), new join(4613627..4613686, 4613723..4614081, 4614164..4614378, 4614438..4614954, 4614996..4616331); improved distance between branch and acceptor, intron 2 Solexa intron data 2008-05-02
SPAC1142.01   old join(3625447..3625460, 3625555..3627544), new 3625574..3627544; removed 5' exon and trimmed to new Met, improved homology Solexa intron data 2008-05-02
SPAC11D3.07c   old complement(join(118195..119827, 119930..120108)), new complement(118195..120108); removed in-frame splice, not required or supported Solexa intron data 2008-05-02
SPAC1751.02c   old complement(join(385755..385887, 385938..386043, 386107..386179, 386296..386310)), new complement(join(385755..385887, 385938..386043, 386107..386149)); remove 5' exon, trimmed to new Met, improved homology Solexa intron data 2008-05-02
SPAC1B3.10c   old complement(join(4945933..4945984, 4946094..4948084)), new complement(4946090..4948084); removed 3' exon, unsupported Solexa intron data 2008-05-02
SPAC23H3.04   old join(2499035..2499164, 2499325..2499353, 2499443..2499824, 2499875..2500236), new join(2499035..2499164, 2499160..2499353, 2499443..2499824, 2499875..2500236); changed 5' 1st and 2nd exon, improved homology Solexa intron data 2008-05-02
SPAC26H5.04   old join(4122149..4123354, 4123535..4124518), new 4122149..4124518; removed unsupported in frame splice Solexa intron data 2008-05-02
SPAC2C4.06c   old complement(join(4269367..4270554, 4270587..4270593, 4270638..4270674, 4270736..4270871)), new complement(join(4269367..4270554, 4270631..4270674, 4270736..4270871)); replaced 2 internal exons with a different singe exon Solexa intron data 2008-05-02
SPAC328.05   old join(3484695..3484698, 3484752..3485065, 3485241..3485342, 3485382..3485528, 3485582..3485807, 3485910..3485974, 3486056..3486502), new join(3484695..3484698, 3484752..3485065, 3485241..3485342, 3485382..3485528, 3485582..3485974, 3486056..3486502); removed inframe splice (exon 5), unsupported Solexa intron data 2008-05-02
SPAC3A12.05c   old complement(join(1426213..1427148, 1427189..1429617, 1429709..1429836, 1429882..1429913)), new complement(join(1426213..1427148, 1427189..1429617, 1429709..1429830, 1429882..1429913)); improved distance beteen branch and acceptor Solexa intron data 2008-05-02
SPAC589.02c   old complement(join(3095075..3098590, 3098626..3098775, 3098878..3098883)), new complement(join(3095075..3098590, 3098626..3098781, 3098878..3098883)); improved branch/acceptor for 1st intron Solexa intron data 2008-05-02
SPAC6F12.08c   old complement(join(1322439..1323955, 1323999..1324140, 1324195..1324234, 1324299..1324336)), new complement(join(1322439..1323955, 1323999..1324140, 1324195..1324252, 1324299..1324336)); improved branch acceptor for intron 1 Solexa intron data 2008-05-02
SPAC8C9.19   old join(3660430..3660438, 3660491..3660556, 3660607..3660713, 3660784..3660886), new join(3660430..3660438, 3660491..3660556, 3660607..3660717); deleted final exon, unsupported, improved length and alignment to orthologs Solexa intron data 2008-05-02
SPAC9G1.13c   old complement(join(1995208..1996148, 1996325..1996413, 1996478..1996683)), new complement(join(1995208..1996148, 1996191..1996268, 1996325..1996413, 1996478..1996683)); added a new 3rd exon, improved homology Solexa intron data 2008-05-02
SPAPB17E12.03   old join(1271889..1271972, 1272015..1272386, 1272483..1272962), new join(1271889..1271972, 1272015..1272962); removed inframe splice, unsupported, improved homology Solexa intron data 2008-05-02
SPBC15D4.13c   old complement(join(3032492..3032710, 3032761..3032822, 3032865..3033222)), new complement(join(3032492..3032710, 3032761..3032822, 3032889..3033222)); better donor for first intron Solexa intron data 2008-05-02
SPBC16C6.03c   old complement(join(4332356..4332454, 4332746..4333123)), new complement(4332698..4333123); final exon, unsupported removed Solexa intron data 2008-05-02
SPBC19G7.06   old join(2359429..2359479 , 2359547..2359693 , 2359845..2359928 , 2360001..2361092), new join(2359429..2359479, 2359547..2359693, 2359845..2359928, 2360064..2361092); altered 3rd intron branch acceptor to agree with published Solexa intron data 2008-05-02
SPBC21.03c   old complement(join(3217985..3218424, 3218467..3218491, 3218693..3218947)), new complement(join(3217985..3218424, 3218462..3218491, 3218580..3218651, 3218704..3218947)); changed 2 internal introns, now agrees with transread data, but still potential to be incorrect Solexa intron data 2008-05-02
SPBC32H8.08c   old complement(join(1465811..1466035, 1466138..1467057, 1467311..1467456, 1467514..1467539)), new complement(join(1465811..1466035 , 1466138..1467057 , 1467311..1467431)); removed 5' intron/exon (unsupported) and trimmed to next met Solexa intron data 2008-05-02
SPBP35G2.06c   old complement(join(973049..974181, 974223..974577, 974617..975002, 975044..975137, 975172..976632)), new complement(join(973049..974181, 974223..974577, 974647..975002, 975044..975137, 975172..976632)); changed donor for intron 3 Solexa intron data 2008-05-02
SPCC1393.06c   old complement(join(804627..805627, 805678..805800, 805907..806009)), new complement(join(804627..805627 , 805678..805800 , 805849..805921 , 805965..806009)); changed first intron and added a new 2nd exon, improved homology, also confirmed by transread data Solexa intron data 2008-05-02
SPCC1450.14c   old complement(join(1759295..1760998, 1761117..1761128)), new complement(1759295..1760998); deleted first exon, unsupported Solexa intron data 2008-05-02
SPCC1827.02c   old complement(join(2377039..2378078, 2378197..2378221)), new complement(2377039..2378127); deleted first exon, unsupported Solexa intron data 2008-05-02
SPCC63.10c   old complement(join(854651..855695, 855766..855800, 855839..855926, 855984..856213)), new complement(join(854651..855926, 855984..856213)); deleted 2nd and 3rd introns, were not required or supported Solexa intron data 2008-05-02
SPAC6F6.16c   merged with SPAC6F6.18c and five introns added PMID:18535244 2008-06-09
SPCC962.05   old join(554521..554722, 554792..556200), new join(554521..554744, 554865..556200) pers. comm. Matthew O'Connell 2008-05-02
SPCC338.08 ctp1 old coordinates complement(1358962..1359819), new complement(join(1358885..1359082, 1359121..1359819)); further altered to complement(join(1358891..1359082, 1359127..1359819)) in accordance with paper pers. comm. Paul Russell; PMID:18378696 2008-01-11;2008-06-19
SPBC2G2.09c crs1 added new C-terminal exon, deleted exon 3452822..3452877, extended intron 2 by 4 nucleotides pers. comm. Charley Chahwan 2008-07-09
SPBC31F10.08 mde2 old coordinates 3764820..3765449, new join(3764820..3765437, 3765491..3765709) pers. comm. Charley Chahwan 2008-07-18
SPBC651.06 mug166 merged with SPBC651.07 pers. comm. Charley Chahwan 2008-07-26
SPBC18E5.14c   merged with SPBC18E5.09c pers. comm. Charley Chahwan 2008-07-31
SPAC959.05c   merged with SPAC959.06c; splicing is tentative pers. comm. Charley Chahwan 2008-08-15
SPBC11B10.10c pht1 N terminal shortened to 2nd methionine; starting coordinate changed from 1503157 to 1503064 pers. comm. L Buchanan and F Stewart 2008-09-05
SPAC27D7.12c but1 extended N-terminal to use first MET as start PMID:14623327 2008-11-11
SPCC962.05 ast1 intron position moved pers comm. M. O' Connell 2008-12-06
SPAPB1E7.14 iec5 old join(3322106..3322331, 3322379..3322512); new join(3321979..3322018, 3322071..3322331, 3322379..3322512) PMID:19040720 2008-12-18
SPAC31G5.12c maf1 old complement(join(3008184..3008795, 3008914..3008957, 3009044..3009089)); new complement(join(3008184..3008795, 3009160..3009258, 3009312..3009317)) PMID:15590667 2008-12-19
SPBC725.12 nbl1 old join(1227762..1227876, 1227926..1228098); new join(1227762..1228094, 1228166..1228307) pers. comm. Kathy Gould 2009-01-30
SPBC14C8.09c   merged with SPBC14C8.08c; frameshifted PMID:16823372 2009-02-02
SPBC23G7.06c   frameshifted; now a single exon PMID:16823372 2009-02-02
SPBC13E7.01   frameshifted PMID:16823372 2009-02-02
SPBC29A3.08   frameshifted; truncated to 2048336..2049892, 2049894..2049896 PMID:16823372 2009-02-02
SPBC1A4.06c   frameshifted; C term exon changed from 1987076..1987675 to 1987044....1987675 PMID:16823372 2009-02-02
SPAC22F3.11c snu23 frameshifted; join(682874..683034, 683102..683109, 683160..683446) to join(682874..682994, 682996..683109, 683160..683446) PMID:16823372 2009-02-02
SPAC1F8.07c   frameshifted; complement(101760..103544) to complement(join(101836..101872, 101872..103544)) PMID:16823372 2009-02-02
SPCC1442.04c   frameshifted; complement(1774200..1775429) to complement(join(1773925..1774239, 1774236..1775429)) PMID:16823372 2009-02-02
SPCC548.04   final exon 223687..223852 to 223687..223796, 223853.223860 pers. comm. Marc Feuermann, Uniprot (SIB) 2009-02-23
SPBP23A10.07 rpa2 truncated N-term to agree with orthologs; 2007960 -> 2008119 pers. comm. Val Wood 2009-03-30
SPBC16E9.16c lsd90 gene structure revised to remove introns, genome sequence contains 2 frameshifts PMID:18079165 2008-01-03
SPBC800.02 whi5 increased intron by 42bp; old coordinates 253148..253231, 253310..253984, new coordinates 253148..253231, 253352..253984 pers. comm. Rob de Bruin 2009-07-27
SPBC18H10.08c ubp4 missing 2 N-terminal exons; old - complement(1784219..1785535); new - complement(join(1784219..1785748, 1785937..1786080, 1786141..1786248)) pers. comm. I. Kouranti 2009-09-10
SPBC800.02 whi5 increased intron by 42bp; old coordinates 253148..253231, 253310..253984, new coordinates 253148..253231, 253352..253984 pers. comm. Rob de Bruin 2009-07-27
SPBC2A9.07c   removed intron pers. comm. Cathrine Arnason Boe 2009-09-10
SPNCRNA.445 snoR61 updated to extend 3' and added splice and identified as snR6 pers. comm. J. Matthews 2008-08-08
SPAC29B12.08   replaced exon 5428786..5428883 with 5429038.. 5429045 pers. comm. Val Wood 2009-12-14
SPAC458.04c   coordinates updated from 4737605..4738147, 4738189..4738283, 4738330..4738714 to 4737605..4738147, 4738189..4738283, 4738330..4738740, 4738779..4738854 pers. comm. Val Wood 2010-02-19
SPCC5E4.10c   coordinates updated from 651622..651905 , 651973..651994 to 651622..651905, 651973..652045, 652115..652225, 652280..652371, 652419..652455 pers. comm. K. Gould 2010-03-19
SPAC26H5.02c nse2 second intron extended to 115 nt pers. comm. Val Wood 2010-08-20
SPAC27F1.09c prp10 added intron to match fully spliced PMID:9837997 2010-09-27
SPAC22G7.04 ubp13 coordinates updated to join(732880..732897, 732942..733040, 733085..733251, 733369..733495, 733536..734113, 734151..735457, 735495..736465) pers. comm. James Iben 2010-10-20
SPAC3H1.04c mdm31   PMID:16823372 2010-10-21
SPBC12D12.09 rev7   pers. comm. Nicole Kosarek 2010-10-21
SPBC1348.12   pseudo->coding pers. comm. Val Wood 2010-10-21
SPBC1778.02 rap1   pers. comm. Yasushi Hiraoka 2010-10-21
SPBC3E7.04c   pseudo->coding pers. comm. Val Wood 2010-10-21
SPBC8D2.07c sfc9   pers. comm. Val Wood 2010-10-21
SPBPB21E7.02c   pseudo->coding pers. comm. Val Wood 2010-10-21
SPCC306.10   pseudo->coding pers. comm. Val Wood 2010-10-21
SPCC622.17 apn1 added 2 5' exons PMID:21193357 2011-01-06
SPAC823.04     PMID:21270388 2011-02-03
SPAC688.11 end4   PMID:21270388 2011-02-03
SPAC29A4.03c mrps9   PMID:21270388 2011-02-03
SPAC688.04c gst3   PMID:21270388 2011-02-03
SPAPB17E12.14c     PMID:21270388 2011-02-03
SPBC29A10.17     PMID:21270388 2011-02-03
SPBP8B7.31     PMID:21270388 2011-02-03
SPBC651.06 mug166   PMID:21270388 2011-02-03
SPBC25H2.11c spt7   PMID:21270388 2011-02-03
SPAC29A4.03c mrps9   PMID:21270388 2011-02-03
SPCC4G3.12c not2   PMID:21270388 2011-02-03
SPCC1322.16 phb2   PMID:21270388 2011-02-03
SPBC13E7.01 cwf22   PMID:21270388 2011-02-03
SPBC4F6.10 vps901   PMID:21270388 2011-02-03
SPBC16H5.12c     PMID:21270388 2011-02-03
SPAC3A11.03     PMID:21270388 2011-02-03
SPBC1711.10c npl4   PMID:21270388 2011-02-03
SPBC1709.12 rid1   PMID:21270388 2011-02-03
SPAC13F5.07c     PMID:21270388 2011-02-03
SPAC18B11.05     PMID:21270388 2011-02-03
SPAC18B11.05 gpi18   PMID:21270388 2011-02-03
SPACUNK4.14 mdb1   PMID:21270388 2011-02-03
SPBC947.10 dsc1 N-terminal extended to use upstream methionine pers. comm. E. Stewart 2011-02-04
SPAC1006.03c red1 intron donor corrected    
SPBC29A3.06   N terminal extended   2012-01-05
SPCC1281.07c   N terminal extended by 24 amino acids   2012-01-05
SPCC4B3.05c hem12 N terminal extended by 4 amino acids based on homology   2012-01-05
SPAC2F3.13c   removed N terminal region overlapping with plp1   2012-12-07
SPAC9G1.15c mzt1 N-terminal shortened to use downstream methionine PMID:23885124, PMID:24006493 2013-11-01
SPBC25B2.07c mmb1 N-terminal shortened to use downstream methionine PMID:21856157 2013-12-06
SPBC3D6.04c mad1 N-terminal shortened to use downstream methionine; removed 13 amino acids pers. comm. Silke Hauf 2013-12-06
SPAC5H10.06c adh4 N-terminal shortened to use downstream methionine; removed 43 amino acids; UTR exon annotated PMID:24003116 2014-01-07
SPNCRNA.98 srp7 Coordinates changed from 4268566-4269064 to 4268662-4268916, to represent the actual functional RNA PMID:2837764, PMID:16453822 2014-06-12
SPSNRNA.01 snu1 Coordinates changed from 3019819-3020472 to 3020205-3020353, to represent the actual functional RNA PMID:2188102 2014-06-19
SPSNRNA.02 snu2 Coordinates changed from 959770-959305 to 959856-959370, to represent the actual functional RNA PMID:3244367 2014-06-19
SPSNRNA.03 snu3 Coordinates changed from 988266-987631 to 987825-987570, to represent the actual functional RNA PMID:3194197 2014-06-19
SPSNRNA.04 snu4 Coordinates changed from 467025-467823 to 467233-4683361, to represent the actual functional RNA PMID:2795654 2014-06-19
SPSNRNA.05 snu5 Coordinates changed from 3236617-3237051 to 3236867-3236986, to represent the actual functional RNA PMID:2587274 2014-06-19
SPSNRNA.06 snu6 Coordinates changed from (2562559-2562374,2562323-2562085) to (2562276-2562323,2562374-2562427), to represent the actual functional RNA PMID:2909894 2014-06-19
SPSNRNA.07 snu32 Coordinates changed from 3959174-3958768 to 3959086-3958832, to represent the actual functional RNA PMID:1560765 2014-06-19
SPAC110.05   Coordinates changed from complement(1905657..1905884) to complement(1905728..1905820) based on ribosome profiling PMID:24929437 2014-07-04
SPAC22F3.04 mug62 Coordinates changed from complement(join(698033..698177, 698223..698441, 698480..698841, 698884..699104, 699148..699363, 699410..702533)) to complement(join(698033..698177, 698223..698441, 698480..698841, 698884..699104, 699148..699363, 699410..702557, 702603..702755)) based on ribosome profiling PMID:24929437 2014-07-04
SPAC1D4.08 pis1 Coordinates changed from join(650814..650893,651173..651848) to join(650488..650545,651193..651848) based on ribosome profiling PMID:24929437 2014-07-04
SPBC839.02   Coordinates changed from join(597611..599124,599256..599334) to 597611..599125 based on ribosome profiling PMID:24929437 2014-07-04
SPAC823.02   Coordinates changed from join(2583804..2583902,2583941..2583973) to join(2583863..2583902,2583941..2584047) based on ribosome profiling PMID:24929437 2014-07-04
SPBC146.01 med15 Coordinates changed from join(996843..997019,997066..1000080) to join(996797..996870,996917..997019,997066..1000080) based on ribosome profiling PMID:24929437 2014-07-04
SPBC27B12.10c tom7 Coordinates changed from complement(join(1344032..1344157,1344214..1344237)) to complement(join(1343913..1343934,1343989..1344025,1344082..1344157,1344214..1344237)) based on ribosome profiling PMID:24929437 2014-07-04
SPCC162.07 ent1 Coordinates changed from complement(join(1571648..1573733,1574016..1574050)) to complement(join(1571648..1573733,1574258..1574280)) based on ribosome profiling PMID:24929437 2014-07-04
SPCC417.03   Coordinates changed from join(1672003..1672051,1672111..1672364) to join(1672003..1672051,1672243..1672332) based on ribosome profiling PMID:24929437 2014-07-04
SPCC320.09 hem15 Coordinates changed from complement(join(149153..150163,150279..150323,150374..150472)) to complement(join(149153..150163,150279..150323,150374..150589)) based on ribosome profiling PMID:24929437 2014-07-04
SPAC1486.05 nup189 Coordinates changed from join(3197028..3197443,3197530..3202450) to join(3197028..3197528,3197528..3202450) pers. comm. Y. Hiraoka 2015-04-14
SPBC13G1.04c abh1 N-terminal shortened to use downstream methionine PMID:22365419 2015-10-13
SPAC22F3.11c snu23 Coordinates changed from complement(890220..890546) to join(682874..682996,682998..683109,683160..683446) based on ribosome profiling PMID:24929437 2016-03-17
SPBC21B10.12 rec6 Coordinates changed from complement(join(1649038..1649472,1649558..1649671)) to complement(join(1649038..1649472,1649558..1649727,1649815..1649878,1650043..1650156)) PMID:26917764 2016-04-19