New and Removed Genes

New Genes Since Publication

Gene Description Date
SPBC1709.20 RNase P and RNase MRP subunit; identified in targeted search for S. cerevisiae POP8 ortholog June 2002
SPAC7D4.15c Oligosaccharyltransferase subunit (predicted) June 2002
SPBC119.18 conserved hypothetical protein June 2002
SPAC1751.04 hypothetical protein; sequence orphan June 2002
SPCC330.19c hypothetical protein; sequence orphan; confirmed by EST Sept 2002
SPAC959.10 tRNA splicing endonuclease; similar to S. cerevisiae YMR059W Sept 2003
SPAC14C4.16 hypothetical protein; sequence orphan; identified in targeted search for S. cerevisiae DAD3 ortholog Sept 2003
SPBC6B1.12c SAGA histone acetylase complex (predicted); involved in nuclear export (predicted); similar to S. cerevisiae YBR111W-A; identified in targeted search for S. cerevisiae SUS1 ortholog Feb 2004
SPBC25H2.10c dihydropteroate synthase (predicted) (ISS); similar to S. cerevisiae YGL232W; updated from pseudogene to coding March 2004
SPBC56F2.14 ribosomal protein, mitochondrial L44 (predicted); similar to S. cerevisiae YMR225C; identified in targeted search for S. cerevisiae MRP144 ortholog March 2004
SPBC106.05c proton-transporting ATP synthase complex, coupling factor F(o) (predicted); non-essential (PMID:12618370); similar to S. cerevisiae YDR322C-A; identified in targeted search for S. cerevisiae YDR322C-A ortholog March 2004
SPAC19D5.11c similar to S. cerevisiae CTF8; pers. comm. Stuart MacNeil September 2004
SPAC19D5.10c sequence orphan September 2004
SPAC3A12.19 mitochondrial ribosomal protein; identified in targeted search for S. cerevisiae YBR282W ortholog September 2004
SPAC57A10.14 SAGA complex subunit (predicted); identified in targeted search for S. cerevisiae SGF11 ortholog January 2005
SPAC8C9.19 conserved protein; similar to D. hansenii DEHA0C10780g May 2005
SPAC8C9.20 sequence orphan May 2005
SPCC1223.15c DASH complex subunit Spc19; pers. comm. Xiangwei He May 2005
SPBC3D6.16 sequence orphan Added May 2005
SPBC3B9.22c DASH complex subunit Dad4 (predicted); pers. comm. Xiangwei He May 2005
SPBC16E9.16c sequence orphan; previously annotated as pseudogene; two peptides in mass spec analysis (pers. comm. Dieter Wolf) November 2005
SPAC27E2.12 dubious Added February 2006
SPBC1347.14c dubious February 2006
SPAC16C4.21 dubious June 2006
SPAC6B12.18 sequence orphan July 2006
SPAC222.17c dubious July 2006
SPAC27E2.13 dubious July 2006
SPCC417.15 dubious July 2006
SPAC806.11 dubious July 2006
SPAC1250.07 TFIIIC subunit Tfc7; from PMID:17409385 April 2007
SPCC1393.14 ten1; nuclear telomere cap complex subunit; pers. comm. Paul Russell July 2007
SPAPB1A10.16 conserved fungal protein; created from the C-term exon of SPAPB1A10.03 December 2007
SPCC569.09 sequence orphan; longest reading frome in solexa transcript SPNG2623 December 2007
SPNCRNA.214 telomerase RNA (predicted) January 2008
SPCC1183.12 previously SPNCRNA.546; splice site not spotted because it was outside the coordinate range of the feature; PMID:18367542 April 2008
SPBC16C6.14 PMID:18367542 April 2008
SPCC70.12c extender of the chronological lifespan protein Ecl1; PMID:18422613 April 2008
SPCC1442.19 PMID:18488015; Solexa prediction May 2008
SPAC222.17 PMID:18488015; Solexa prediction May 2008
SPCC569.09 PMID:18488015; Solexa prediction May 2008
SPAPB1E7.14 PMID:18488015; Solexa prediction May 2008
SPAC688.16 PMID:18488015; Solexa prediction May 2008
SPAP4C9.02 PMID:18488015; Solexa prediction May 2008
SPCC16C4.22 PMID:18488015; Solexa prediction May 2008
SPAC23D3.16 PMID:18488015; Solexa prediction May 2008
SPCC1183.12 PMID:18488015; Solexa prediction May 2008
SPAC25H1.10C PMID:18488015; Solexa prediction May 2008
SPBC1604.25 PMID:18488015; Solexa prediction May 2008
SPAC23D3.17 PMID:18488015; Solexa prediction May 2008
SPAC4G9.22 PMID:18488015; Solexa prediction May 2008
SPCC757.15 PMID:18488015; Solexa prediction May 2008
SPAC227.19C PMID:18488015; Solexa prediction May 2008
SPAC167.09 PMID:18488015; Solexa prediction May 2008
SPBC16C6.14 PMID:18488015; Solexa prediction May 2008
SPAC20G4.09 PMID:18488015; Solexa prediction May 2008
SPAC222.18 PMID:18488015; Solexa prediction May 2008
SPAC6F6.19 PMID:18488015; Solexa prediction May 2008
SPAC22F3.15 PMID:18488015; Solexa prediction May 2008
SPAC27E2.14 PMID:18488015; Solexa prediction May 2008
SPAC23H4.21 PMID:18488015; Solexa prediction May 2008
SPAC57A7.15C PMID:18488015; Solexa prediction May 2008
SPAC12G12.17 PMID:18488015; Solexa prediction May 2008
SPBC29A10.17 PMID:18488015; Solexa prediction May 2008
SPAC1556.06 PMID:18488015; Solexa prediction May 2008
SPBC26H8.16 PMID:18488015; Solexa prediction May 2008
SPCC70.12C PMID:18488015; Solexa prediction May 2008
SPBP35G2.16c PMID:19352039 April 2009
SPBC8E4.12c PMID:19352039 April 2009
SPCC1235.16 pers. comm. Juan Mata April 2009
SPCC18.19C pers. comm. Val Wood; note first 2 exons may be incorrect, homology is within 3rd exon February 2010
SPCC306.10 pers. comm. Val Wood; pseudo-> coding March 2010
SPNCRNA.497 PMID:18641648 May 2010
SPNCRNA.498 PMID:18641648 May 2010
SPNCRNA.499 PMID:18641648 May 2010
SPNCRNA.507 PMID:18641648 May 2010
SPNCRNA.510 PMID:18641648 May 2010
SPNCRNA.514 PMID:18641648 May 2010
SPNCRNA.515 PMID:18641648 May 2010
SPNCRNA.523 PMID:18641648 May 2010
SPNCRNA.530 PMID:18641648 May 2010
SPAC222.19 PMID:21270388 Jan 2011
SPAC17G8.15 PMID:21270388 Jan 2011
SPAC1805.18 PMID:21270388 Jan 2011
SPAC1486.11 PMID:21270388 Jan 2011
SPAC3H5.13 PMID:21270388 Jan 2011
SPAC15A10.17 PMID:21270388 Jan 2011
SPAC4F10.22 PMID:21270388 Jan 2011
SPAC1B3.21 PMID:21270388 Jan 2011
SPRRNA.56 PMID:21270388 Jan 2011
SPAC9G1.15c PMID:21270388 Jan 2011
SPAC13F5.08 PMID:21270388 Jan 2011
SPAC6B12.19 PMID:21270388 Jan 2011
SPAC3G9.17 PMID:21270388 Jan 2011
SPAC16E8.18c PMID:21270388 Jan 2011
SPAC926.10 PMID:21270388 Jan 2011
SPAC19G12.17 PMID:21270388 Jan 2011
SPAC23A1.20 PMID:21270388 Jan 2011
SPAC1F7.14 PMID:21270388 Jan 2011
SPAC4D7.15 PMID:21270388 Jan 2011
SPAC4D7.14 PMID:21270388 Jan 2011
SPBC839.20 PMID:21270388 Jan 2011
SPBC409.23 PMID:21270388 Jan 2011
SPBC8D2.23 PMID:21270388 Jan 2011
SPBC3H7.18 PMID:21270388 Jan 2011
SPBC1711.18 PMID:21270388 Jan 2011
SPBC24C6.13 PMID:21270388 Jan 2011
SPBC32F12.16 PMID:21270388 Jan 2011
SPBC30D10.21 PMID:21270388 Jan 2011
SPBC887.22 PMID:21270388 Jan 2011
SPBC839.19 PMID:21270388 Jan 2011
SPBC530.16 PMID:21270388 Jan 2011
SPBC14C8.19 PMID:21270388 Jan 2011
SPBC17D1.17 PMID:21270388 Jan 2011
SPBC1105.19 PMID:21270388 Jan 2011
SPBC56F2.15 PMID:21270388 Jan 2011
SPCP20C8.04 PMID:21270388 Jan 2011
SPCC330.20 PMID:21270388 Jan 2011
SPCC63.09 PMID:21270388 Jan 2011
SPCC4B3.20 PMID:21270388 Jan 2011
SPCC330.21 PMID:21270388 Jan 2011
SPAC11D3.11c pseudo to coding Jan 2011
SPBC713.14c identified by ribosome profiling (PMID:24929437) July 2014
SPAC823.17 identified by ribosome profiling (PMID:24929437) July 2014
SPAC110.06 identified by ribosome profiling (PMID:24929437) July 2014
SPAPB1A11.06 previously SPNCRNA.31 (PMID:26494834) November 2015
SPAC11D3.20 PMID:26494834 November 2015
SPAC29A4.23 PMID:26494834 November 2015
SPBC3B8.10 F1F0 ATPase synthase peripheral stalk assembly factor Ina17 (predicted) (PMID:26494834) November 2015

 

Genes Removed Since Publication

Gene Comment Date
SPBC19G7.12c removed because sequence similarity supports SPBC19G7.11c 2004-09-14
SPAC212.10 removed as part of UTR of SPAC212.11  
SPAC3F10.14 reverse strand of SPAC3F10.15c  
SPBC428.09c presumed non-coding as no methionine or consensus splice sites  
SPAC222.17c presumed non-coding; was a very small ORF in ncRNA prl50  
SPNCRNA.135 Initially annotated as a non-coding RNA but subsequently determined to be the 5' UTR of SPBC16D10.06 (pers. comm S. Whitehall)  
SPBPB21E7.10 partial ORF of 35 aa, no reason to believe this is coding  
SPAC4G8.15c dubious; unsupported by Solexa transcript data  
SPAPB18E9.03c dubious; unsupported by Solexa transcript data  
SPBC18H10.21c alias SPBC9B6.01c; dubious; unsupported by Solexa transcript data  
SPBC9B6.01c alias of SPBC18H10.21c; dubious; unsupported by Solexa transcript data  
SPCC2H8.03 dubious; unsupported by Solexa transcript data  
SPAC22E12.12 dubious; unsupported by Solexa transcript data  
SPNCRNA.85 replaced by protein coding gene SPAC227.19c  
SPNCRNA.48 replaced by protein coding gene SPAC2F3.18  
SPNCRNA.97 replaced by short protein coding gene SPAC27E2.14  
SPAC8E11.09c previously annotated as dubious but no evidence for splicing, and non-canonical splice sites; unsupported by Solexa transcript data  
SPAC22E12.15 previously annotated as dubious but dubious splice prediction; unsupported by Solexa transcript data  
SPAC1002.21 was annotated as dubious but based on position in uracil regulatable operon, as this CDS does not appear to be transcribed. t is possible that the localization data is an artifact of the combination of overexpression and hydrophobicity. The protein sequence is also a strange composition, and there is no ortholog in octosporus or japonicus genomes. On balance, taking into account all of the available features and contextual information, it is unlikely that this feature codes for a bona fide protein.  
SPAC8C9.20 non consensus branch sites, and no coverage with transcriptome data  
SPAC22E12.12 unsupported by Solexa transcript data and largely overlapping with 3' UTR of rpl24-3  
SPCC1183.12 previously SPNCRNA.546; splice site not spotted because it was outside the coordinate range of the feature; PMID:18367542  
SPBC16C6.14 unsupported by Solexa transcript data and largely overlapping with 3' UTR of rpl24-3  
SPAC6F6.18c merged with SPAC6F6.16c; PMID:18535244  
SPBC651.07 merged with SPBC651.06; pers. comm. Charly Chahwan  
SPNCRNA.109 part of protein coding gene merge  
SPBC18E5.09c merged with SPBC18E5.14c; pers. comm. Charly Chahwan  
SPAC959.06c merged with SPAC959.05c; pers. comm. Charly Chahwan  
SPCC794.14c dubious 2005-05
SPNCRNA.523 extended exons of adjacent protein coding gene 2008-12-19
SPBC14C8.08c merged with SPBC14C8.09c; frameshifted; PMID:16823372 2009-02-02
SPRRNA.25 small fragment of 25S rRNA; 2009-11-26
SPAC4G9.22 likely to be non-coding RNA, no supporting evidence for protein 2010-02-21
SPNCRNA.509 dubious and partially overlapping with Ost5 2010-02-18
SPBC11C11.12 cob intron fragment currently annotated as pseudogene 2010-03-09
SPBCPT2R1.09c no coding region 2010-09-19
SPBPB2B2.04 no coding region 2010-09-19
SPBPB2B2.03c no coding region 2010-09-19
SPAC17A2.15 was on the reverse strand of the N-terminal extension of SPAC17A2.08 2011-03-10
SPBC1348.13 Coordinates updated; now annotated as nuclear mitochondrial pseudogene (SO:0001044) 2011-11-20
SPNCRNA.10 merged with SPNCRNA.1234 2011-12-16
SPNCRNA.1098 merged with SPNCRNA.07 2011-12-16
SPNCRNA.1196 merged with SPNCRNA.67 2011-12-16
SPNCRNA.125 merged with SPCC16A11.14 2011-12-16
SPNCRNA.1254 merged with SPNCRNA.511 2011-12-16
SPNCRNA.1291 merged with SPNCRNA.519 2011-12-16
SPNCRNA.1486 merged with SPNCRNA.388 2011-12-16
SPNCRNA.18 merged with SPNCRNA.928 2011-12-16
SPNCRNA.489 merged with SPNCRNA.1187 2011-12-16
SPNCRNA.502 merged with SPNCRNA.1228 2011-12-16
SPNCRNA.582 merged with SPNCRNA.1208 2011-12-16
SPNCRNA.64 merged with SPCC1393.13 2011-12-16
SPNCRNA.884 merged with SPNCRNA.214 2011-12-16
SPNCRNA.958 merged with SPAC23A1.20 2011-12-16
SPAC1F12.03c removed; replaced by a nuclear mitochondrial pseudogene (NUMT) feature 2012-07-16
SPAC1F8.09c annotated in error 2013-02-22
SPBC713.13 deleted; ID added as synonym to SPBC713.14c (PMID:24929437) 2014-07-04
SPNCRNA.252 changed to LTR 2015-01-22
SPNCRNA.76 overlapped with correctly annotated NUMT (SPNUMT.9) 2015-10-12
SPNCRNA.83 overlapped with correctly annotated NUMT (SPNUMT.8) 2015-10-12
SPNCRNA.906 merged with snR30 2015-11-16
SPNCRNA.814 merged with snR98 2015-11-16
SPNCRNA.1436 merged with snR95 2015-11-16
SPNCRNA.9061 merged with snR91 2015-11-16
SPNCRNA.1038 merged with snR90 2015-11-16
SPNCRNA.1394 merged with snR3 2015-11-16
SPNCRNA.727 deleted; ID added as synonym to SPNCRNA.82 and SPSNORNA.10 (covers both) 2015-11-16
SPNCRNA.727 deleted; ID added as synonym to snR41/SPSNORNA.07, snR70/SPSNORNA.08 and snR51b/SPSNORNA.09 (covers all) 2015-11-16
SPNCRNA.866 unsupported (PMID:21511999) 2015-11-30
SPNCRNA.867 unsupported (PMID:21511999) 2015-11-30
SPAC1D4.07c not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPAC27E2.13 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPAC4H3.12c not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPBC1685.12c not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPBC32F12.17 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPBC354.11c not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPBC36.13 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPCC1672.14 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPCC188.05 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPCC417.04 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPCC622.05 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11
SPCC794.16 not protein-coding (PMID:24929437, PMID:26615217) 2015-12-11