- Genome Status
Data Submission Form
PomBase can host many types of data provided by the research community. Data from high-throughput experiments can be displayed in the context of the Ensembl genome browser. You can use this form or email the PomBase helpdesk to submit published data; also see the FAQ on data formats. Please provide as much information about your data as possible, including the data type (e.g. sequence features, sequence variation, gene expression, phenotype) and description, a track name, and a PubMed ID for the paper describing the data. If you plan to upload a file, please also include the file name. When we receive your submitted form, we will send instructions on how to validate your file (hint: if you can add your data as a custom track, the file is valid) and upload it via FTP.
If you have data representing biological or technical replicates, we recommend that you also provide a file with data representing a consensus, combination, or average of the replicates. The description for the "consensus" file should include the method used to determine the consensus (e.g. mean or median value, or other computational transformation).
Note: We can only use PomBase systematic IDs for genes and other sequence features. Any non-standard IDs will be discarded. If you need to annotate new sequence features, or if you need help finding IDs for existing features, please contact the curators before submitting your data.
You can either upload a file or provide an accession from ENA, ArrayExpress, or GEO; please only supply a file name OR an accession, not both. (Also, please list accession(s) only in the Accession field, not in any of the track description fields.)
If you are using ENA/AE/GEO accessions, please complete this form once for each accession you have to submit. If you plan to upload files, complete the form once for each file, and please include all requested details for each track (data type, method, sample info).