End sequence analysis of end sequences done 6-2-98

962-1.t3 and 962-1.t7 indicate that 962 nearly completely overlaps a cosmid 
named 2C6 which we assumed is on chromosome 1   2C6 did not have any overlaps 
there although this was expected.  This might mean that 2C6 is a misnamed 
cosmid

1289-1.t3 hits a region in the middle of chromosome 1 cosmid 8E4  cosmid 8E4 
might again have been mapped to the wrong chromosome  1289-1.t7 does not have 
any hits  hits to sequence on the righmost arm of chromosome 2 were not found 
either

1020 no overlaps found, no overlaps expected

1241 has been sequenced in Japan, the end sequences correspond to the boundaries
of the cosmid

359-2.t3 part of it has already been sequenced in Japan, it corresponds to 
the sequence in embl  this end sequences resides in the overlap with 1683 
which has also been sequenced in Japan

1268 hits the sequences we expect it to hit: 1268 shotgun data, 27B12 and 568

553-2.t3 overlaps 736 at 5' end this is correct

622 end sequences are made up of LTR-like sequence so it is hard to establish 
what it really overlaps

651 no overlaps found, no overlaps expected

691-2.t3 hits 8D2, 17A3 and 213 on chromosome 2
691-2.t7 hits 973 on chromosome 2
it does not look like we will get any unique sequence from it

737 t3 hits 74 as expected
737-1.t7 does not hit anything which is probably correct

895 t3 hits 1795, 895-1.t7 does not hit anything, this is correct

1817-1.t3 and 18171.t7 do not hit anything, this is correct

364 end sequence is made up of LTR-like sequence but the complete finished 
sequence is available now and looks o.k.

1906-1.t3 overlaps 1739 and 1906-1.t7 does not hit anything, this is correct

330-2.t7 overlaps last 8kb of 320

550-2.t7 does not overlap anything this is correct

777-1.t7 is made up of LTR-like sequence so it is hard to establish 
what it really overlaps

1919-1.t7 does not hit anything which is probably correct

1827 t3 and t7 do not hit anything but we expect them to hit 70 once 
shotgun data of it have become available

1494-2.t7 does not hit anything but we expect it to hit 70 once 
shotgun data of it have become available

1418-2.t3 and 1418-2.t7 do not overlap anything this is correct

1450-2.t3 and 1450-2.t7 do not overlap anything this is correct

1572-2.t3 does not hit anything, as expected

1685-2.t3 does not hit anything, 1685-2.t7 hits 649, indicates an 
overlap of around 8kb

1739-1.t3 overlaps 576 so we might not need 653 
1739-1.t7 no hits but the shotgun data of 1906 are not available yet
