BLASTN 1.4.7 [16-Oct-94] [Build 00:04:03 Oct 20 1994]

Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers,
and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol. Biol.
215:403-10.

Notice:  this program and its default parameter settings are optimized to find
nearly identical sequences rapidly.  To identify weak similarities encoded in
nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  c1020 S. pombe chromosome 3
        (42,460 letters)

Database:  fn.980312-115535-end_seq.fasta
           11 sequences; 14,278 total letters.
Searching.........done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

 14G10-2.sp6  bases 1 to 1242 (start to end)                  3099  4.6e-270  3
 19D5-1.t7  bases 1 to 1257 (start to end)                     108  0.42      1
 970-2.t7a  bases 1 to 1372 (start to end)                      94  0.9993    1
 970-1.t7  bases 1 to 1184 (start to end)                       94  0.9993    1



>14G10-2.sp6  bases 1 to 1242 (start to end)
  Length = 1242

  Plus Strand HSPs:

 Score = 3099 (856.3 bits), Expect = 4.6e-270, Sum P(3) = 4.6e-270
 Identities = 623/627 (99%), Positives = 623/627 (99%), Strand = Plus / Plus

Query:  12377 TCAATATTATCTGAATACTATAAATAGAGCTACTGCTGAACCTCGTTCCTCAGTTCAGTT 12436
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     27 TCAATATTATCTGAATACTATAAATAGAGCTACTGCTGAACCTCGTTCCTCAGTTCAGTT 86

Query:  12437 ATGAGCTATATTAGTGATAGGTAACATTATAACCCAGTTAATACAATACCTATACTCAGT 12496
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     87 ATGAGCTATATTAGTGATAGGTAACATTATAACCCAGTTAATACAATACCTATACTCAGT 146

Query:  12497 TGCTACTTATACAACCTGTGTATCGTAATATAATAGATCACAAGGAAAACTCACCGCAGT 12556
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    147 TGCTACTTATACAACCTGTGTATCGTAATATAATAGATCACAAGGAAAACTCACCGCAGT 206

Query:  12557 TCTACGTATCCTTAAATCAGATACCAAACTGCGTAGCTTACAATAACTGAACTCTTGTGA 12616
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    207 TCTACGTATCCTTAAATCAGATACCAAACTGCGTAGCTTACAATAACTGAACTCTTGTGA 266

Query:  12617 TCTACAATTAACTCCTTTTAGGAAAAAGGAATTATTGAATAAATATATATCATAAATATA 12676
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    267 TCTACAATTAACTCCTTTTAGGAAAAAGGAATTATTGAATAAATATATATCATAAATATA 326

Query:  12677 TATATTTCTCTCCTTCTGGGTTCAAAGGAGAAGGAACTTTGGAAGGACTGTTATCCCTTT 12736
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    327 TATATTTCTCTCCTTCTGGGTTCAAAGGAGAAGGAACTTTGGAAGGACTGTTATCCCTTT 386

Query:  12737 TGAAATCTCCCAAAGGGAAACATATACAATGTCCTACGCAAATTATCGTTATATGAAAGC 12796
              |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct:    387 TGAAATCTCCCAAAGGGAAACATATACAATGTCCTACGCAAATTATCGCTATATGAAAGC 446

Query:  12797 AAGAGCAAAACGATGGAGACCAGAGAATTTGGATGGAATTCAAACATCAGACGAACATTT 12856
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    447 AAGAGCAAAACGATGGAGACCAGAGAATTTGGATGGAATTCAAACATCAGACGAACATTT 506

Query:  12857 AATAAACCTTTTTGCAAAAATATTATCGAAGCATGTACCAGAGATAGGGAAATTCGATCC 12916
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    507 AATAAACCTTTTTGCAAAAATATTATCGAAGCATGTACCAGAGATAGGGAAATTCGATCC 566

Query:  12917 AAATAAGGATGTTGAAAGTTACATTTCAAAACTTGATCAACACTTTACTGAATACCCTTC 12976
              |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct:    567 AAATAACGATGTTGAAAGTTACATTTCACAACTTGATCAACACTTTACTGAATACCCTTC 626

Query:  12977 ATTATTCCCAAATGAGCATACTAAAAG 13003
              |||||||||||||||||||||| ||||
Sbjct:    627 ATTATTCCCAAATGAGCATACTTAAAG 653

 Score = 1123 (310.3 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
 Identities = 227/230 (98%), Positives = 227/230 (98%), Strand = Plus / Plus

Query:  16944 TCAATATTATCTGAATACTATAAATAGAGCTACTGCTGAACCTCGTTCCTCAGTTCAGTT 17003
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     27 TCAATATTATCTGAATACTATAAATAGAGCTACTGCTGAACCTCGTTCCTCAGTTCAGTT 86

Query:  17004 ATGAGCTATATTAGTGATAGGTAACATTATAACCCAGTTAATACAATACCTATACTCAGT 17063
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     87 ATGAGCTATATTAGTGATAGGTAACATTATAACCCAGTTAATACAATACCTATACTCAGT 146

Query:  17064 TGCTACTTATACAACCTGTGTATCGTAATATAATAGATCACAAGGAAAACTCACCGCAGT 17123
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    147 TGCTACTTATACAACCTGTGTATCGTAATATAATAGATCACAAGGAAAACTCACCGCAGT 206

Query:  17124 TCTACGTATCCTTAAATCAGATACCAAACTGCGTAGCTTACACTTAATGA 17173
              |||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct:    207 TCTACGTATCCTTAAATCAGATACCAAACTGCGTAGCTTACAATAACTGA 256

 Score = 242 (66.9 bits), Expect = 4.6e-270, Sum P(3) = 4.6e-270
 Identities = 58/70 (82%), Positives = 58/70 (82%), Strand = Plus / Plus

Query:  13325 CTTTTTAGAGGACAAAAGAACAGCCTCGTATGGTAAAACTCACAAGCGTTTTCAACCGCA 13384
              |||||||  || ||||| |||||||||| |||||||||||| ||| |||||| | || ||
Sbjct:   1078 CTTTTTAAGGGCCAAAAAAACAGCCTCGAATGGTAAAACTCCCAACCGTTTTAACCCCCA 1137

Query:  13385 AAATAAAAAT 13394
              | |||||| |
Sbjct:   1138 ACATAAAACT 1147

 Score = 103 (28.5 bits), Expect = 4.6e-270, Sum P(3) = 4.6e-270
 Identities = 23/26 (88%), Positives = 23/26 (88%), Strand = Plus / Plus

Query:  12998 TAAAAGACAGTATACATTGAATCACC 13023
              |||| ||||||||||||||||  |||
Sbjct:    649 TAAAGGACAGTATACATTGAAATACC 674

 Score = 92 (25.4 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
 Identities = 28/40 (70%), Positives = 28/40 (70%), Strand = Plus / Plus

Query:  29525 AAATCAATTAATCAATAAATATATAAAAATAAAAATTCTA 29564
              |||  ||||| | ||||||||||||  |  || |  | ||
Sbjct:    291 AAAGGAATTATTGAATAAATATATATCATAAATATATATA 330

 Score = 87 (24.0 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
 Identities = 23/30 (76%), Positives = 23/30 (76%), Strand = Plus / Plus

Query:  38327 GAATTCAATAATAAAGGAAACATTTAATAA 38356
              ||||||||  || |    ||||||||||||
Sbjct:    482 GAATTCAAACATCAGACGAACATTTAATAA 511

 Score = 85 (23.5 bits), Expect = 8.3e-84, Sum P(3) = 8.3e-84
 Identities = 21/26 (80%), Positives = 21/26 (80%), Strand = Plus / Plus

Query:  20177 ATACATATATACAAAATATATATATT 20202
              | | ||||||   |||||||||||||
Sbjct:    307 AAATATATATCATAAATATATATATT 332

 Score = 85 (23.5 bits), Expect = 6.3, Sum P(3) = 1.0
 Identities = 25/35 (71%), Positives = 25/35 (71%), Strand = Plus / Plus

Query:  37653 AACGTAATTTTTTCGCAGCTTGACGTATCCTTAAA 37687
              || | ||  |   ||||| |  |||||||||||||
Sbjct:    188 AAGGAAAACTCACCGCAGTTCTACGTATCCTTAAA 222

 Score = 84 (23.2 bits), Expect = 18., Sum P(2) = 1.0
 Identities = 36/60 (60%), Positives = 36/60 (60%), Strand = Plus / Plus

Query:  36458 AGATAATACAATACAATTCATTAGTCTCAAAATTTTCAAAGATCGTGTTTGAATATGATA 36517
              || |||||||||||   |  | |||  | |  | | |||     || |   ||||| |||
Sbjct:    122 AGTTAATACAATACCTATACTCAGTTGCTACTTATACAACCTGTGTATCGTAATATAATA 181


>19D5-1.t7  bases 1 to 1257 (start to end)
  Length = 1257

  Minus Strand HSPs:

 Score = 108 (29.8 bits), Expect = 0.54, P = 0.42
 Identities = 28/36 (77%), Positives = 28/36 (77%), Strand = Minus / Plus

Query:  4002 TCTTATCATTAACAAATTGTATAAAGTAAAGGTAAA 3967
             | |||| | |||  |||||||||||||||  | |||
Sbjct:   956 TTTTATTACTAAACAATTGTATAAAGTAATCGAAAA 991


>970-2.t7a  bases 1 to 1372 (start to end)
  Length = 1372

  Plus Strand HSPs:

 Score = 94 (26.0 bits), Expect = 7.3, P = 1.0
 Identities = 26/35 (74%), Positives = 26/35 (74%), Strand = Plus / Plus

Query:  26540 ATGAAGAGGTAATTGACTTTGTTAAAAAATTGATT 26574
              |||||  || ||   |||| |  ||||||||||||
Sbjct:    394 ATGAAATGGAAAGCCACTTGGAAAAAAAATTGATT 428


>970-1.t7  bases 1 to 1184 (start to end)
  Length = 1184

  Plus Strand HSPs:

 Score = 94 (26.0 bits), Expect = 7.3, P = 1.0
 Identities = 26/35 (74%), Positives = 26/35 (74%), Strand = Plus / Plus

Query:  26540 ATGAAGAGGTAATTGACTTTGTTAAAAAATTGATT 26574
              |||||  || ||   |||| |  ||||||||||||
Sbjct:    393 ATGAAATGGAAAGCCACTTGGAAAAAAAATTGATT 427


Parameters:

  V=500
  B=250
  -ctxfactor=2.00
  E=10

  Query                        -----  As Used  -----    -----  Computed  ----
  Strand MatID Matrix name     Lambda    K       H      Lambda    K       H
   +1      0   +5,-4           0.192   0.226   0.357    same    same    same
   -1      0   +5,-4           0.192   0.226   0.357    same    same    same

  Query
  Strand MatID  Length  Eff.Length   E    S  W   T  X     E2  S2
   +1      0   42,460     42460      10. 90 11 N/A 73   0.021 84
   -1      0   42,460     42460      10. 90 11 N/A 73   0.021 84


Statistics:
  Query          Expected         Observed           HSPs       HSPs
  Strand MatID  High Score       High Score       Reportable  Reported
   +1      0    97 (26.8 bits)  3099 (856.3 bits)      11         11
   -1      0    97 (26.8 bits)   108 (29.8 bits)        1          1

  Query         Neighborhd  Word      Excluded    Failed   Successful  Overlaps
  Strand MatID   Words      Hits        Hits    Extensions Extensions  Excluded
   +1      0     42453         602         231         356       15         0
   -1      0     42453         338          38         293        7         0

  Database:  fn.980312-115535-end_seq.fasta
    Release date:  unknown
    Posted date:  6:17 PM BST May 1, 1998
  # of letters in database:  14,278
  # of sequences in database:  11
  # of database sequences satisfying E:  4
  No. of states in DFA:  257 (514 KB)
  Total size of DFA:  2140 KB (2176 KB)
  Time to generate neighborhood:  0.16u 0.03s 0.20t  Real: 00:00:00
  Time to search database:  0.01u 0.00s 0.01t  Real: 00:00:00
  Total cpu time:  0.20u 0.06s 0.26t  Real: 00:00:00
