POMBOX: A Fission Yeast Cloning Toolkit for Molecular and Synthetic Biology.
The fission yeast  Schizosaccharomyces pombe  is a popular model organism in molecular biology and cell physiology. With its ease of genetic manipulation and growth, supported by in-depth functional annotations in the PomBase database and genome-wide metabolic models, S. pombe  is an attractive option for synthetic biology applications. However, S. pombe  currently lacks modular tools for generating genetic circuits with more than 1 transcriptional unit. We developed a toolkit to address this gap. Adapted from the MoClo-YTK plasmid kit for  Saccharomyces cerevisiae  and using the same modular cloning grammar, our POMBOX toolkit is designed to facilitate fast, efficient, and modular construction of genetic circuits in S. pombe . It allows for interoperability when working with DNA sequences that are functional in both S. cerevisiae  and  S. pombe  (e.g., protein tags, antibiotic resistance cassettes, and coding sequences). Moreover, POMBOX enables the modular assembly of multigene pathways and increases the possible pathway length from 6 to 12 transcriptional units. We also adapted the stable integration vector homology arms to Golden Gate assembly and tested the genomic integration success rates depending on different sequence sizes, from 4 to 24 kb. We included 14  S. pombe  promoters that we characterized using two fluorescent proteins, in both minimally defined (EMM2─Edinburgh minimal media) and complex (YES─yeast extract with supplements) media. Then, we examined the efficacy of 6  S. cerevisiae  and 6 synthetic terminators in  S. pombe . Finally, we used the POMBOX kit for a synthetic biology application in metabolic engineering and expressed plant enzymes in  S. pombe  to produce specialized metabolite precursors, namely, methylxanthine, amorpha-4,11-diene, and cinnamic acid from the purine, mevalonate, and aromatic amino acid pathways.
Hebra T, Smrčková H, Elkatmis B, Převorovský M, Pluskal T