format-version: 1.2 date: 30:07:2021 14:14 saved-by: midori auto-generated-by: OBO-Edit 2.3.1 subsetdef: Grouping_terms "High level terms not used for direct annotation, but for organizing more specific terms in the ontology." default-namespace: fission_yeast_phenotype_condition ontology: fyeco [Term] id: FYECO:0000001 name: fission yeast phenotype condition def: "Any aspect of an experiment that the experimenter controls and that does not depend on which strain/organism/cells are used." [PomBase:al] subset: Grouping_terms synonym: "phenotype condition" RELATED [PomBase:al] created_by: antonialock creation_date: 2012-02-07T11:36:20Z [Term] id: FYECO:0000002 name: temperature def: "Any experimental condition specifying the temperature at which the experiment was performed." [PomBase:al] subset: Grouping_terms is_obsolete: true created_by: antonialock creation_date: 2012-02-07T12:00:23Z [Term] id: FYECO:0000003 name: expression level def: "The expression level of the gene was altered in the experiment, compared to expressing the gene from the genome and its endogenous promoter." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T12:23:02Z [Term] id: FYECO:0000004 name: high temperature def: "The experiment was performed, or cells were grown, at a high temperature (typically exceeding ~32 degrees Celsius)." [PomBase:al] synonym: "33 degrees Celsius" NARROW [PomBase:al] synonym: "34 degrees Celsius" NARROW [PomBase:al] synonym: "35 degrees Celsius" NARROW [PomBase:al] synonym: "36 degrees Celsius" NARROW [PomBase:al] synonym: "37 degrees Celsius" NARROW [PomBase:al] synonym: "38 degrees Celsius" NARROW [PomBase:al] synonym: "39 degrees Celsius" NARROW [PomBase:al] synonym: "40 degrees Celsius" NARROW [PomBase:al] synonym: "41 degrees Celsius" RELATED [PomBase:al] synonym: "42 degrees Celsius" RELATED [PomBase:al] synonym: "43 degrees Celsius" RELATED [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2012-02-07T12:17:29Z [Term] id: FYECO:0000005 name: standard temperature def: "The experiment was performed, or cells were grown in a temperature typically in the range between 25+32 degrees Celsius." [PomBase:al] synonym: "25 degrees Celsius" NARROW [PomBase:al] synonym: "26 degrees Celsius" NARROW [PomBase:al] synonym: "27 degrees Celsius" NARROW [PomBase:al] synonym: "28 degrees Celsius" NARROW [PomBase:al] synonym: "29 degrees Celsius" NARROW [PomBase:al] synonym: "30 degrees Celsius" NARROW [PomBase:al] synonym: "31 degrees Celsius" NARROW [PomBase:al] synonym: "32 degrees Celsius" NARROW [PomBase:al] synonym: "normal temperature" EXACT [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment disjoint_from: FYECO:0000004 ! high temperature disjoint_from: FYECO:0000006 ! low temperature created_by: antonialock creation_date: 2012-02-07T12:17:29Z [Term] id: FYECO:0000006 name: low temperature def: "The experiment was performed, or cells were grown, at a low temperature (typically lower than ~25 degrees Celsius)." [PomBase:al] synonym: "17 degrees Celsius" NARROW [PomBase:al] synonym: "18 degrees Celsius" NARROW [PomBase:al] synonym: "19 degrees Celsius" NARROW [PomBase:al] synonym: "20 degrees Celsius" NARROW [PomBase:al] synonym: "21 degrees Celsius" NARROW [PomBase:al] synonym: "22 degrees Celsius" NARROW [PomBase:al] synonym: "23 degrees Celsius" NARROW [PomBase:al] synonym: "24 degrees Celsius" NARROW [PomBase:al] synonym: "cold" RELATED [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment disjoint_from: FYECO:0000004 ! high temperature created_by: antonialock creation_date: 2012-02-07T12:17:29Z [Term] id: FYECO:0000007 name: overexpression def: "The expression level of the gene was increased compared to expressing it from its endogenous promoter in the genome." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T12:23:45Z [Term] id: FYECO:0000008 name: knockdown def: "The expression level of the gene was decreased compared to expressing it from its endogenous promoter in the genome." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T12:23:45Z [Term] id: FYECO:0000009 name: grouping growth medium def: "Any experimental condition pertaining to the medium in which cells are grown." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000001 ! fission yeast phenotype condition created_by: antonialock creation_date: 2012-02-07T12:28:25Z [Term] id: FYECO:0000010 name: absence of chemical alt_id: FYECO:0000018 def: "The experimental conditions included the absence of a chemical." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T02:22:00Z [Term] id: FYECO:0000011 name: grouping limited def: "Any experimental condition pertaining to the presence of one or more substances in a limited amount." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000059 ! chemical added or excluded created_by: antonialock creation_date: 2012-02-07T02:23:26Z [Term] id: FYECO:0000013 name: grouping defined medium def: "Any experimental condition that describes a defined growth medium, i.e. one in which all constituent substances and their concentrations are known." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000009 ! grouping growth medium created_by: antonialock creation_date: 2012-02-07T12:41:33Z [Term] id: FYECO:0000015 name: sporulation medium def: "Experiments were performed in defined medium promoting mating and sporulation." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "malt extract medium" NARROW [PomBase:al] synonym: "mating medium" RELATED [PomBase:al] synonym: "SPA medium" NARROW [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-02-07T01:35:35Z [Term] id: FYECO:0000016 name: high glucose MM def: "Experiments were performed in minimal medium containing a high concentration of glucose (~5-8% typically) as carbon source, salts and water." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "high glucose minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-02-07T12:51:06Z [Term] id: FYECO:0000021 name: + limited adenine def: "An experimental condition in which adenine was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] comment: Example: 5 mg/L adenine compared to 100 mg/L. xref: PMID:7565608 is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-02-07T02:34:30Z [Term] id: FYECO:0000022 name: absence of P-factor def: "P-factor, the mating pheromone secreted by P-cells, was absent from the experiment." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T02:55:29Z [Term] id: FYECO:0000023 name: presence of 3',5'-cyclic AMP def: "Experiments were performed in the presence of cAMP. Presence can either imply exogenous addition of the chemical or the action of adenylate cyclase." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T03:09:38Z [Term] id: FYECO:0000024 name: + sugar def: "An experimental condition in which a sugar was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-07T03:09:38Z [Term] id: FYECO:0000025 name: + sorbitol def: "An experimental condition in which sorbitol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-07T03:09:38Z [Term] id: FYECO:0000026 name: + vanadate def: "An experimental condition in which vanadate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "sodium orthovanadate added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-07T03:09:38Z [Term] id: FYECO:0000027 name: presence of mating pheromone def: "Experiment was performed in the presence of mating pheromone." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T03:09:38Z [Term] id: FYECO:0000028 name: + TBC def: "An experimental condition in which TBC was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: This term was made obsolete because it is not clear what chemical TBC refers to. is_obsolete: true created_by: antonialock creation_date: 2012-02-07T03:09:38Z [Term] id: FYECO:0000030 name: + ions def: "An experimental condition in which ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. subset: Grouping_terms is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-07T03:09:38Z [Term] id: FYECO:0000031 name: + K ions def: "An experimental condition in which potassium ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "potassium ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000032 name: + Cl ions def: "An experimental condition in which chloride ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "chloride ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000033 name: + Cd ions def: "An experimental condition in which cadmium ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "cadmium ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000034 name: + Ca ions def: "An experimental condition in which calcium ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "Ca ions added" EXACT [PomBase:al] synonym: "calcium ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000035 name: + Cu ions def: "An experimental condition in which copper ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "copper ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000036 name: + Pb ions def: "An experimental condition in which lead ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "lead ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000037 name: + Bi ions def: "An experimental condition in which bismuth ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "bismuth ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000038 name: + Mg ions def: "An experimental condition in which magnesium ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "magnesium ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-02-07T03:10:12Z [Term] id: FYECO:0000039 name: + P-factor def: "An experimental condition in which P-factor was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "P factor added" EXACT [PomBase:al] is_a: FYECO:0000058 ! + mating pheromone created_by: antonialock creation_date: 2012-02-07T03:10:36Z [Term] id: FYECO:0000040 name: + M-factor def: "An experimental condition in which M-factor was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "M factor added" EXACT [PomBase:al] is_a: FYECO:0000058 ! + mating pheromone created_by: antonialock creation_date: 2012-02-07T03:10:36Z [Term] id: FYECO:0000041 name: sugar alcohol added def: "An experimental condition in which a sugar alcohol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_obsolete: true created_by: antonialock creation_date: 2012-02-07T03:11:16Z [Term] id: FYECO:0000042 name: + fatty acid def: "An experimental condition in which a fatty acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:alock] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. subset: Grouping_terms is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-07T03:14:49Z [Term] id: FYECO:0000043 name: + palmitic acid def: "An experimental condition in which palmitic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:46Z [Term] id: FYECO:0000044 name: + myristic acid def: "An experimental condition in which myristic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:46Z [Term] id: FYECO:0000045 name: + pentadecanoic acid def: "An experimental condition in which pentadecanoic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:46Z [Term] id: FYECO:0000046 name: + margaric acid def: "An experimental condition in which margaric acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:46Z [Term] id: FYECO:0000047 name: + stearic acid def: "An experimental condition in which stearic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:47Z [Term] id: FYECO:0000048 name: + petroselinic acid def: "An experimental condition in which petroselinic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:47Z [Term] id: FYECO:0000049 name: + oleic acid def: "An experimental condition in which oleic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:47Z [Term] id: FYECO:0000050 name: + linoleic acid def: "An experimental condition in which linoleic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:47Z [Term] id: FYECO:0000051 name: + linolenic acid def: "An experimental condition in which linolenic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:47Z [Term] id: FYECO:0000052 name: + arachidic acid def: "An experimental condition in which arachidic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:47Z [Term] id: FYECO:0000053 name: + melissic acid def: "An experimental condition in which melissic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-07T03:17:47Z [Term] id: FYECO:0000054 name: glycerol MM alt_id: FYECO:0000077 def: "Experiments were performed in minimal medium where glycerol is the sole carbon source (i.e. NO addition of glucose/ethanol etc at all)." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, such as 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "glycerol minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-02-07T03:29:51Z [Term] id: FYECO:0000055 name: M and P factor produced def: "Both M-factor and P-factor, endogenously produced by cells, were present in the experiment." [PomBase:al] synonym: "presence of M-factor and P-factor" EXACT [PomBase:al] synonym: "presence of mating pheromones" EXACT [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T03:37:43Z [Term] id: FYECO:0000056 name: + 3,5-cyclic AMP def: "An experimental condition in which 3'5'-cyclic AMP was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [CHEBI:17489] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. xref: CHEBI:17489 "3',5'-cyclic AMP" is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-07T05:07:31Z [Term] id: FYECO:0000057 name: 3'5'-cyclic AMP produced def: "The experiment was performed under conditions such that cAMP was produced endogenously." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T05:10:53Z [Term] id: FYECO:0000058 name: + mating pheromone def: "An experimental condition in which mating pheromone (M factor and P factor) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. subset: Grouping_terms is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-07T05:25:01Z [Term] id: FYECO:0000059 name: chemical added or excluded alt_id: FYECO:0000017 alt_id: FYECO:0000019 alt_id: FYECO:0000020 def: "Any experimental condition that specifies one or more chemical(s) that are added to, or excluded from, growth medium, assay buffer, etc." [PomBase:mah] subset: Grouping_terms synonym: "chemical added" RELATED [PomBase:al] synonym: "chemicals" RELATED [PomBase:al] is_a: FYECO:0000001 ! fission yeast phenotype condition created_by: antonialock creation_date: 2012-02-07T05:36:48Z [Term] id: FYECO:0000060 name: chemical produced def: "Chemical was endogenously produced in the experiment." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-07T05:37:05Z [Term] id: FYECO:0000061 name: + xenobiotic substrate def: "An experimental condition in which a xenobiotic substrate was added to the medium or assay buffer in excess compared to standard medium or assay buffers. A xenobiotic substrate is a macromolecular substrate which is not synthesised by S. pombe." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-10T11:50:01Z [Term] id: FYECO:0000062 name: absence of nitrogen def: "Nitrogen was absent from the experiment." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-08T07:33:48Z [Term] id: FYECO:0000063 name: absence of 3'5'-cyclic AMP def: "3'5'-cyclic AMP was absent from the experiment." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-10T12:15:58Z [Term] id: FYECO:0000064 name: + inositol def: "An experimental condition in which inositol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-13T02:35:48Z [Term] id: FYECO:0000065 name: absence of adenine def: "Adenine was absent from the experiment." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-13T02:53:59Z [Term] id: FYECO:0000066 name: absence of inositol def: "Inositol was absent from the experiment." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-14T03:15:13Z [Term] id: FYECO:0000067 name: + lauric acid def: "An experimental condition in which lauric acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-14T03:18:35Z [Term] id: FYECO:0000068 name: + vaccenic acid def: "An experimental condition in which vaccenic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-02-14T03:21:32Z [Term] id: FYECO:0000069 name: + caffeine def: "An experimental condition in which caffeine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-15T12:28:11Z [Term] id: FYECO:0000070 name: absence of uracil def: "Uracil was absent from the experiment." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-02-15T12:40:35Z [Term] id: FYECO:0000071 name: + 1-Na-PP1 def: "An experimental condition in which 1-Na-PP1 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "1-Na-PP1 present" EXACT [PomBase:al] synonym: "4-amino-1-tert-butyl-3-(1'-naphthyl)pyrazolo[3,4-d]pyrimidine added" EXACT [CHEBI:52310] synonym: "4-amino-1-tert-butyl-3-(1'-naphthyl)pyrazolo[3,4-d]pyrimidine present" EXACT [CHEBI:52310] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-19T10:45:53Z [Term] id: FYECO:0000072 name: glycerol MM with trace glucose def: "Experiments were performed in minimal medium where glycerol is the main carbon source, but the medium also contained trace amounts of glucose (<0.1%)." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "glycerol main carbon source + very low glucose MM" EXACT [PomBase:al] synonym: "glycerol minimal medium with trace glucose" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-02-27T12:12:17Z [Term] id: FYECO:0000073 name: DHA minimal medium def: "Experiments were performed in minimal medium where DHA (dihydroxyacetone) is the main carbon source." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "DHA MM" EXACT [PomBase:al] synonym: "dihydroxyacetone MM" EXACT [PomBase:al] synonym: "dihydroxyactone minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-02-27T12:15:46Z [Term] id: FYECO:0000074 name: + NAD+ def: "An experimental condition in which NAD+ was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-27T01:14:00Z [Term] id: FYECO:0000075 name: + NADP+ def: "An experimental condition in which NADP+ was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-27T01:14:35Z [Term] id: FYECO:0000076 name: + dihydroxyacetone def: "An experimental condition in which dihydroxyacetone was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "DHA added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-27T04:02:57Z [Term] id: FYECO:0000078 name: + H2O2 def: "An experimental condition in which hydrogen peroxide was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "hydrogen peroxide added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-02-29T03:06:23Z [Term] id: FYECO:0000079 name: + thiabendazole def: "An experimental condition in which thiabendazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "TBZ added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-03-12T02:59:23Z [Term] id: FYECO:0000080 name: grouping rich medium def: "Any experimental condition that describes a rich growth medium, i.e. one in which not all constituent substances and their concentrations are specified, and some are present in excess." [PomBase:mah] comment: Rich media typically support faster growth than defined media. subset: Grouping_terms is_a: FYECO:0000009 ! grouping growth medium created_by: antonialock creation_date: 2012-03-14T01:33:58Z [Term] id: FYECO:0000081 name: low glucose YES def: "Experiments were performed in rich medium containing yeast extract and other components. The concentration of glucose is very low (eg around 0.1%)." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "low glucose rich medium" RELATED [PomBase:al] synonym: "low glucose YE" RELATED [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-03-14T01:35:45Z [Term] id: FYECO:0000082 name: + arginine def: "An experimental condition in which arginine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-03-22T08:21:12Z [Term] id: FYECO:0000084 name: + glutamate def: "An experimental condition in which glutamate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-03-22T08:28:47Z [Term] id: FYECO:0000085 name: + glutamine def: "An experimental condition in which glutamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-03-22T08:29:26Z [Term] id: FYECO:0000086 name: + ornithine def: "An experimental condition in which ornithine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-03-22T08:29:44Z [Term] id: FYECO:0000087 name: + pro def: "An experimental condition in which proline was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "proline added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-03-22T08:30:19Z [Term] id: FYECO:0000088 name: + 2-OG def: "An experimental condition in which 2-oxoglutarate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "2-OG present" EXACT [PomBase:al] synonym: "2-oxoglutarate added" EXACT [PomBase:al] synonym: "2-oxoglutarate present" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-03-22T08:30:35Z [Term] id: FYECO:0000089 name: + Na oleate def: "An experimental condition in which sodium oleate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "sodium oleate added" EXACT [PomBase:al] is_a: FYECO:0000042 ! + fatty acid created_by: antonialock creation_date: 2012-03-22T08:52:53Z [Term] id: FYECO:0000090 name: + limited nitrogen def: "An experimental condition in which nitrogen was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] synonym: "nitrogen starvation" RELATED [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-03-26T11:47:41Z [Term] id: FYECO:0000091 name: + cisplatin def: "An experimental condition in which cisplatin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-04-18T05:05:41Z [Term] id: FYECO:0000092 name: + Na ions def: "An experimental condition in which sodium ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "sodium ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-04-23T01:01:11Z [Term] id: FYECO:0000093 name: + Li ions def: "An experimental condition in which lithium ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "lithium ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-04-23T01:04:46Z [Term] id: FYECO:0000094 name: grouping sequential growth conditions def: "Any series of two or more different sets of conditions used in a single experiment." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000238 ! grouping condition combinations created_by: antonialock creation_date: 2012-04-23T03:15:51Z [Term] id: FYECO:0000095 name: 24-48h nitrogen starvation followed by 4-7 day recovery in rich medium def: "Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 24-48h. This medium is then replaced with rich medium containing nitrogen and cells allowed to grow for 4-7 days." [PomBase:al] is_a: FYECO:0000110 ! nitrogen starvation and recovery created_by: antonialock creation_date: 2012-04-23T03:17:23Z [Term] id: FYECO:0000096 name: 24-48h nitrogen starvation followed by 5-12h recovery in rich medium def: "Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 24-48h. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 5-12h." [PomBase:al] is_a: FYECO:0000110 ! nitrogen starvation and recovery created_by: antonialock creation_date: 2012-04-24T01:48:26Z [Term] id: FYECO:0000097 name: 24-48h nitrogen starvation followed by 12-24h recovery in rich medium def: "Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 24-48h. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 12-24h." [PomBase:al] is_a: FYECO:0000110 ! nitrogen starvation and recovery created_by: antonialock creation_date: 2012-04-24T01:52:54Z [Term] id: FYECO:0000098 name: 72h-7days nitrogen starvation followed by 12-24h recovery in rich medium def: "Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 72h-7days. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 12-24h." [PomBase:al] is_a: FYECO:0000110 ! nitrogen starvation and recovery created_by: antonialock creation_date: 2012-04-24T01:55:58Z [Term] id: FYECO:0000099 name: 72h-7days nitrogen starvation followed by 4-7 days recovery in rich medium def: "Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 72h-7days. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 4-7 days." [PomBase:al] is_a: FYECO:0000110 ! nitrogen starvation and recovery created_by: antonialock creation_date: 2012-04-25T12:31:19Z [Term] id: FYECO:0000100 name: water medium def: "Experiments were performed in medium containing water only." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2013-01-09T17:56:46Z [Term] id: FYECO:0000101 name: medium texture def: "Any experimental condition specifying the physical texture of the growth medium." [PomBase:al] subset: Grouping_terms is_obsolete: true created_by: antonialock creation_date: 2012-05-04T07:51:30Z [Term] id: FYECO:0000102 name: agar plates def: "Cells were grown on agar plates." [PomBase:al] synonym: "solid agar plates" EXACT [PomBase:al] is_a: FYECO:0000009 ! grouping growth medium disjoint_from: FYECO:0000103 ! liquid culture created_by: antonialock creation_date: 2012-05-04T07:53:03Z [Term] id: FYECO:0000103 name: liquid culture def: "Cells were grown in liquid culture." [PomBase:al] is_a: FYECO:0000009 ! grouping growth medium created_by: antonialock creation_date: 2012-05-04T07:53:10Z [Term] id: FYECO:0000104 name: low glucose MM def: "Experiments were performed in minimal medium containing a low concentration of glucose (~0.5%) as carbon source, salts and water." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "low glucose minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-05-11T02:53:00Z [Term] id: FYECO:0000105 name: + limited thiamine def: "An experimental condition in which thiamine was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PMID:12653111] xref: PMID:12653111 is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-05-11T03:00:02Z [Term] id: FYECO:0000106 name: + thiamine def: "An experimental condition in which thiamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-11T03:02:06Z [Term] id: FYECO:0000107 name: + aminopyrimidine def: "An experimental condition in which aminopyrimidine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-11T03:02:21Z [Term] id: FYECO:0000108 name: + thiazole def: "An experimental condition in which thiazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-11T03:03:12Z [Term] id: FYECO:0000109 name: grouping excess def: "Any experimental condition that describes the presence of one or more substances at higher than default levels in growth medium, assay buffer, etc." [PomBase:mah] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. subset: Grouping_terms is_a: FYECO:0000059 ! chemical added or excluded created_by: antonialock creation_date: 2012-05-11T03:03:45Z [Term] id: FYECO:0000110 name: nitrogen starvation and recovery def: "Cells are first grown in minimal medium lacking nitrogen and are then allowed to recover in rich medium." [PomBase:al] synonym: "recovery from nitrogen depletion" EXACT [PomBase:al] synonym: "recovery from nitrogen starvation" EXACT [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2012-05-11T03:31:01Z [Term] id: FYECO:0000111 name: + limited myo-inositol def: "An experimental condition in which myo-inositol was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] comment: Mating and sporulation is very inefficient in media containing 1 mg/L of myo-inositol, compared to 10 mg/L which is the most efficient myo-inositol concentration observed for mating and sporulation. synonym: "limited inositol added" RELATED [PomBase:al] xref: PMID:9560432 is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-05-17T12:11:53Z [Term] id: FYECO:0000112 name: + limited phosphate def: "An experimental condition in which phosphate was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-05-18T09:21:48Z [Term] id: FYECO:0000113 name: + Calcofluor White def: "An experimental condition in which Calcofluor White was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-18T05:06:48Z [Term] id: FYECO:0000114 name: + cyclosporin A def: "An experimental condition in which cyclosporin A was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-22T01:47:47Z [Term] id: FYECO:0000115 name: + GTP def: "An experimental condition in which guanosine triphosphate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ guanosine triphosphate" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-22T03:25:08Z [Term] id: FYECO:0000116 name: grouping heat shock def: "Any experimental condition that includes heat shock, i.e. a step in which cells or samples are briefly exposed to a very high temperature." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2012-05-23T11:01:03Z [Term] id: FYECO:0000117 name: heat shock and recovery at normal temperature def: "Cells are initially grown at a normal growth temperature. This is followed by a heat shock where the temperature is increased to a very high temperature followed by recovery at the initial temperature." [PomBase:al] synonym: "heat shock for 20-30 min at 48 degrees C, preceeded and followed by growth at normal temperature" NARROW [PomBase:al] is_a: FYECO:0000116 ! grouping heat shock created_by: antonialock creation_date: 2012-05-23T11:07:16Z [Term] id: FYECO:0000118 name: + glutathione def: "An experimental condition in which glutathione was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "GSH added" EXACT [PomBase:al] synonym: "L-gamma-glutamyl-L-cysteinylglycine added" EXACT [CHEBI:16856] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-30T05:18:17Z [Term] id: FYECO:0000119 name: + N-acetyl-L-cysteine def: "An experimental condition in which N-acetyl-L-cysteine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "acetylcysteine added" EXACT [PomBase:al] synonym: "NAC added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-05-30T05:18:44Z [Term] id: FYECO:0000120 name: grouping absent def: "Any experimental condition that specifies one or more substance(s) that are absent from the growth medium, assay buffer, etc. Typically, absence is only specified for substances that would normally be present." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000059 ! chemical added or excluded created_by: antonialock creation_date: 2012-05-30T09:51:14Z [Term] id: FYECO:0000121 name: + methylamine def: "An experimental condition in which methylamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PMID:10467002] comment: Methylamine is a nitrogen analogue that Schizosaccharomyces pombe cannot utilize as a nitrogen source. is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-06-13T16:49:55Z [Term] id: FYECO:0000122 name: grouping growth timing def: "Any experimental condition pertaining to the duration or frequency of one or more steps in a protocol." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000001 ! fission yeast phenotype condition created_by: antonialock creation_date: 2012-06-14T09:25:38Z [Term] id: FYECO:0000123 name: growth to stationary phase def: "Cells were grown to stationary phase." [PMID:10467002] comment: Typically, cells grown in glucose minimal medium will be in stationary phase at 23h. is_a: FYECO:0000122 ! grouping growth timing created_by: antonialock creation_date: 2012-06-14T09:26:40Z [Term] id: FYECO:0000124 name: growth to late exponential phase def: "Cells were grown to late exponential phase." [PMID:10467002] comment: Typically, cells grown in glucose minimal medium will be in late exponential phase at 16h. is_a: FYECO:0000122 ! grouping growth timing created_by: antonialock creation_date: 2012-06-14T09:30:11Z [Term] id: FYECO:0000125 name: growth to exponential phase def: "Cells were grown to exponential phase." [PomBase:al] is_a: FYECO:0000122 ! grouping growth timing created_by: antonialock creation_date: 2012-06-14T09:31:28Z [Term] id: FYECO:0000126 name: glucose MM alt_id: FYECO:0000014 def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, and water, and may be supplemented with additional amino acids." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, such as 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "EMM" NARROW [PomBase:al] synonym: "EMMC" NARROW [PomBase:mah] synonym: "glucose minimal medium" EXACT [PomBase:al] synonym: "normal glucose minimal medium" EXACT [PomBase:al] synonym: "normal glucose MM" EXACT [PomBase:al] synonym: "SD medium" EXACT [PomBase:mah] synonym: "standard glucose minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-06-14T11:28:33Z [Term] id: FYECO:0000127 name: nitrogen absent def: "Nitrogen was completely excluded from the experimental medium/buffer." [PomBase:al] comment: Note that the medium type should also be specified, for instance 'glucose minimal medium'. synonym: "-N" EXACT [PomBase:al] synonym: "nitrogen excluded" RELATED [PomBase:al] synonym: "nitrogen free" EXACT [PomBase:al] synonym: "nitrogen starvation" RELATED [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonialock creation_date: 2012-06-14T11:36:47Z [Term] id: FYECO:0000128 name: pH def: "Any experimental condition where the pH of the medium or assay buffer is significantly different than the standard pombe growth medium with a pH of ~5.6." [PMID:10467002] subset: Grouping_terms is_obsolete: true created_by: antonialock creation_date: 2012-06-14T12:02:27Z [Term] id: FYECO:0000129 name: high pH alt_id: FYECO:0000130 def: "Any experimental condition where the pH of the medium or assay buffer is higher than the standard pombe growth medium of pH of ~5.6." [PMID:10467002] synonym: "pH 6.8" NARROW [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2012-06-14T12:04:38Z [Term] id: FYECO:0000131 name: + ubiquinone Q6 def: "An experimental condition in which ubiquinone Q6 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "coenzyme Q6 added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-06-14T15:21:19Z [Term] id: FYECO:0000132 name: grouping experimental environment def: "Any experimental condition pertaining to the external environment in which an experiment is conducted." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000001 ! fission yeast phenotype condition created_by: antonialock creation_date: 2012-06-14T16:41:56Z [Term] id: FYECO:0000133 name: oxygen level def: "Describes experimental conditions in which the amount of oxygen available during growth or the assay was controlled." [PomBase:al] subset: Grouping_terms is_obsolete: true created_by: antonialock creation_date: 2012-06-14T20:21:38Z [Term] id: FYECO:0000134 name: anaerobic environment def: "The assay, or growth of cells, was conducted under strict anaerobic conditions." [PomBase:al] synonym: "- O" EXACT [PomBase:al] synonym: "- oxygen" EXACT [PomBase:al] synonym: "-O" EXACT [PomBase:al] synonym: "-oxygen" EXACT [PomBase:al] synonym: "anaerobiosis" EXACT [PomBase:al] synonym: "minus oxygen" EXACT [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2012-06-14T20:22:49Z [Term] id: FYECO:0000135 name: semi-aerobic environment def: "The assay, or growth of cells, was conducted under semi-anaerobic conditions, where the level of oxygen is lower than normal." [PomBase:al] synonym: "hypoxia" RELATED [PomBase:al] synonym: "hypoxic environment" RELATED [PomBase:al] synonym: "limited O atoms" RELATED [PomBase:al] synonym: "limited oxygen" RELATED [PomBase:al] synonym: "reduced oxygen level" RELATED [PomBase:al] synonym: "semi aerobic environment" EXACT [PomBase:al] synonym: "semi-anaerobic environment" EXACT [PomBase:al] synonym: "semiaerobic environment" EXACT [PomBase:al] synonym: "semianaerobic environment" EXACT [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2012-06-14T20:26:46Z [Term] id: FYECO:0000136 name: raffinose YE def: "Experiments were performed in rich medium containing raffinose as the carbon source, yeast extract and other components. The concentration of raffinose is typically around 2%." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "raffinose rich medium" BROAD [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-06-14T20:32:52Z [Term] id: FYECO:0000137 name: YES alt_id: FYECO:0000012 def: "Experiments were performed in rich medium containing yeast extract, glucose, and other components. The concentration of glucose is typically around 2-3%." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, such as 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "complex medium" RELATED [PomBase:al] synonym: "glucose rich medium" EXACT [PomBase:al] synonym: "normal glucose rich medium" EXACT [PomBase:al] synonym: "standard dextrose rich medium" EXACT [PomBase:al] synonym: "standard glucose rich medium" EXACT [PomBase:al] synonym: "YE" NARROW [PomBase:al] synonym: "YE4S" NARROW [PomBase:al] synonym: "YE5S" NARROW [PomBase:al] synonym: "YEA" RELATED [PomBase:pc] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-06-14T20:35:20Z [Term] id: FYECO:0000138 name: glycerol YE alt_id: FYECO:0000083 def: "Experiments were performed in rich medium containing glycerol as the sole carbon source, yeast extract and other components. The concentration of glycerol is typically around 2-3% and supplemented with trace amounts of another carbon source (e.g. glucose)." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, such as 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "glycerol rich medium" BROAD [PomBase:al] synonym: "glycerol sole carbon source rich medium" EXACT [PomBase:al] synonym: "glycerol sole carbon source YE" RELATED [PomBase:al] synonym: "non-fermentable glycerol sole carbon source rich medium" EXACT [PomBase:al] synonym: "nonfermentable glycerol sole carbon source rich medium" RELATED [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-06-14T20:38:23Z [Term] id: FYECO:0000139 name: glycerol and ethanol rich medium def: "Experiments were performed in rich medium containing glycerol and ethanol as the carbon sources, yeast extract and other components." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "glycerol + ethanol YE" RELATED [PomBase:al] synonym: "glycerol and ethanol YE" RELATED [PomBase:al] synonym: "non-fermentable glycerol and ethanol rich medium" EXACT [PomBase:al] synonym: "nonfermentable glycerol and ethanol rich medium" EXACT [PomBase:al] synonym: "YCEG" NARROW [PomBase:al] synonym: "YEGES" NARROW [PomBase:vw] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-06-14T20:39:24Z [Term] id: FYECO:0000140 name: in vitro def: "The experiment was carried out in vitro." [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2012-06-18T08:38:33Z [Term] id: FYECO:0000141 name: in vivo def: "The experiment was carried out in vivo." [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2012-06-18T08:38:37Z [Term] id: FYECO:0000142 name: + ade def: "An experimental condition in which adenine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ adenine" RELATED [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-06-18T12:39:39Z [Term] id: FYECO:0000143 name: + antimycin A def: "An experimental condition in which antimycin A was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "respiratory chain inhibitor" RELATED [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-06-19T15:23:58Z [Term] id: FYECO:0000144 name: sucrose YE def: "Experiments were performed in rich medium containing raffinose as the carbon source, yeast extract and other components. The concentration of sucrose is typically around 2%." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "sucrose rich medium" BROAD [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-06-19T15:26:15Z [Term] id: FYECO:0000145 name: maltose MM def: "Experiments were performed in medium containing maltose, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "maltose minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-06-19T16:25:41Z [Term] id: FYECO:0000146 name: trehalose MM def: "Experiments were performed in defined medium containing trehalose, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "trehalose minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-06-19T16:26:05Z [Term] id: FYECO:0000147 name: sucrose MM def: "Experiments were performed in defined medium containing sucrose, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "sucrose minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-06-19T16:26:22Z [Term] id: FYECO:0000148 name: galactose rich medium with trace glucose def: "Experiments were performed in rich medium containing galactose and glucose as the carbon sources, yeast extract and other components. The concentration of galactose is typically around 2%, whereas the concentration of glucose is very low - around 0.1%." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "non-fermentable galactose and very low glucose rich medium" EXACT [PomBase:al] synonym: "nonfermentable galactose and very low glucose rich medium" EXACT [PomBase:al] synonym: "YpGalA" NARROW [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-06-20T11:48:39Z [Term] id: FYECO:0000149 name: + 1-DNJ def: "An experimental condition in which 1-deoxynojirimycin (1-DNJ) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "1-deoxynojirimycin added" EXACT [PomBase:al] synonym: "deoxynojirimycin added" EXACT [PomBase:al] synonym: "DNJ added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-06-28T12:22:14Z [Term] id: FYECO:0000150 name: calcium absent def: "Calcium ions were completely excluded from the experimental medium/buffer." [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonialock creation_date: 2012-07-03T14:48:27Z [Term] id: FYECO:0000151 name: + Mn ions def: "An experimental condition in which manganese ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] synonym: "manganese ions added" EXACT [PomBase:al] synonym: "Mn2+ added" RELATED [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-07-03T15:19:48Z [Term] id: FYECO:0000152 name: + mannose def: "An experimental condition in which mannose was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-07-12T08:07:09Z [Term] id: FYECO:0000153 name: + diethyl maleate def: "An experimental condition in which diethyl maleate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Diethyl maleate is an agent that leads to the depletion of the antioxidant glutathione in cells. Note that diethyl maleate should not be written without a space, as diethylmaleate is a different compound. synonym: "diethyl maleate added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-07-19T12:36:56Z [Term] id: FYECO:0000154 name: + ethanolamine def: "An experimental condition in which ethanolamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "2-aminoethanol added" EXACT [PomBase:al] synonym: "ETA added" EXACT [PomBase:al] synonym: "MEA added" EXACT [PomBase:al] synonym: "monoethanolamine added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-07-20T13:27:44Z [Term] id: FYECO:0000155 name: + choline def: "An experimental condition in which choline was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-07-20T14:15:26Z [Term] id: FYECO:0000156 name: rhodamine-phalloidin added def: "An experimental condition in which rhodamine-phalloidin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "rhodamine phalloidin" EXACT [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-07-25T09:00:20Z [Term] id: FYECO:0000157 name: growth to stationary phase in rich medium followed by transfer to H2O def: "Cells are initially grown in glucose minimal medium to stationary phase followed by transfer to H2O and continued growth." [PomBase:al] is_a: FYECO:0000158 ! grouping growth to stationary phase created_by: antonialock creation_date: 2012-07-25T16:07:31Z [Term] id: FYECO:0000158 name: grouping growth to stationary phase def: "Any experimental condition that describes the growth of a cell population until it reaches stationary phase, i.e. a state in which cell growth division are offset by cell death, such that the cell density is stable." [PomBase:mah] subset: Grouping_terms is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2012-07-25T16:13:49Z [Term] id: FYECO:0000159 name: growth to stationary phase in rich medium followed by transfer to minimal medium def: "Cells are initially grown in glucose minimal medium to stationary phase followed by transfer to minimal medium and continued growth." [PomBase:al] is_a: FYECO:0000158 ! grouping growth to stationary phase created_by: antonialock creation_date: 2012-07-25T16:14:28Z [Term] id: FYECO:0000160 name: + tacrolimus alt_id: FYECO:0000029 def: "An experimental condition in which tacrolimus was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "FK506 added" EXACT [PomBase:al] synonym: "tacrolimus added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-07-26T16:18:18Z [Term] id: FYECO:0000161 name: Hoechst stain added def: "An experimental condition in which Hoechst stain was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "bisBenzimide added" NARROW [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-08-13T13:22:44Z [Term] id: FYECO:0000162 name: high glucose YES def: "Experiments were performed in rich medium containing yeast extract and other components. The concentration of glucose is high (eg around 8%)." [PomBase:al] synonym: "high glucose rich medium" RELATED [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-08-14T11:45:05Z [Term] id: FYECO:0000163 name: FITC-conjugated lectin added def: "An experimental condition in which FITC-conjugated lectin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-08-17T11:59:55Z [Term] id: FYECO:0000164 name: anti-tubulin antibodies added synonym: "anti-tubulin antibody added" EXACT [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-08-17T14:08:21Z [Term] id: FYECO:0000165 name: + Na2S def: "An experimental condition in which sodium sulfide (Na2S) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "sodium sulfide added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-08-22T13:22:34Z [Term] id: FYECO:0000166 name: + NaCl def: "An experimental condition in which sodium chloride (NaCl) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "sodium chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-08-23T13:35:40Z [Term] id: FYECO:0000167 name: + SDS def: "An experimental condition in which SDS (sodium dodecyl sulfate) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "sodium dodecyl sulfate added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-08-29T17:04:57Z [Term] id: FYECO:0000168 name: heat shock and recovery at high temperature def: "Cells are initially grown at a high temperature. This is followed by a heat shock where the temperature is increased to a higher temperature, followed by recovery at the initial temperature." [PomBase:al] synonym: "heat shock for 20-30 min at 48 degrees C, preceeded and followed by growth at high temperature" NARROW [PomBase:al] is_a: FYECO:0000116 ! grouping heat shock created_by: antonialock creation_date: 2012-08-30T16:10:36Z [Term] id: FYECO:0000169 name: + limited ethanolamine def: "An experimental condition in which ethanolamine was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-08-30T17:39:24Z [Term] id: FYECO:0000170 name: + HU def: "An experimental condition in which hydroxyurea was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "hydroxyurea added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-09-03T15:38:10Z [Term] id: FYECO:0000171 name: sorbitol absent def: "Sorbitol was completely excluded from the experimental medium/buffer." [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonialock creation_date: 2012-09-20T12:50:07Z [Term] id: FYECO:0000172 name: + Zn ions def: "An experimental condition in which zinc ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] synonym: "zinc ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-09-12T12:11:36Z [Term] id: FYECO:0000173 name: + ZnCl2 def: "An experimental condition in which zinc chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "zinc chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-09-12T13:54:08Z [Term] id: FYECO:0000174 name: + FeCl2 def: "An experimental condition in which ferrous chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "iron chloride added" RELATED [PomBase:al] synonym: "iron dichloride added" RELATED [PomBase:al] synonym: "iron(II) chloride" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-09-12T13:55:55Z [Term] id: FYECO:0000175 name: + CdCl2 def: "An experimental condition in which cadmium chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ cadmium chloride" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-09-12T13:57:22Z [Term] id: FYECO:0000176 name: + EDTA def: "An experimental condition in which ethylenediaminetetraacetic acid (EDTA) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "EDTA added" EXACT [PomBase:al] synonym: "ethylenediaminetetraacetic acid added" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-09-12T13:58:30Z [Term] id: FYECO:0000177 name: + limited zinc def: "An experimental condition in which zinc was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] synonym: "limited Zn added" EXACT [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-09-13T09:15:03Z [Term] id: FYECO:0000178 name: + met def: "An experimental condition in which methionine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "M added" RELATED [PomBase:al] synonym: "methionine added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-09-14T07:57:07Z [Term] id: FYECO:0000179 name: + cysteine def: "An experimental condition in which cysteine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "C added" EXACT [PomBase:al] synonym: "Cys added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-09-14T08:12:02Z [Term] id: FYECO:0000180 name: + limited sulfur def: "An experimental condition in which sulfur was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] synonym: "limited sulphur added" EXACT [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-09-14T15:29:44Z [Term] id: FYECO:0000181 name: + glucose def: "An experimental condition in which glucose was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-10-03T16:55:50Z [Term] id: FYECO:0000182 name: + asparagine def: "An experimental condition in which asparagine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "asn added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-10-03T16:56:23Z [Term] id: FYECO:0000183 name: + alpha-tocopherol def: "An experimental condition in which alpha-tocopherol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "vitamin E added" RELATED [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-10-24T18:01:22Z [Term] id: FYECO:0000184 name: + CuCl2 def: "An experimental condition in which copper chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "copper chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-10-26T13:32:50Z [Term] id: FYECO:0000185 name: + limited sodium def: "An experimental condition in which sodium was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-10-26T18:09:39Z [Term] id: FYECO:0000186 name: + FeSO4 def: "An experimental condition in which ferrous sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "iron sulfate added" EXACT [PomBase:al] synonym: "iron sulphate added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-10-30T18:01:16Z [Term] id: FYECO:0000187 name: pantothenate absent def: "Pantothenate was completely excluded from the experimental medium/buffer." [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonialock creation_date: 2012-11-06T17:52:03Z [Term] id: FYECO:0000188 name: + pantothenate def: "An experimental condition in which pantothenate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-06T17:52:53Z [Term] id: FYECO:0000189 name: + limited pantothenate def: "An experimental condition in which pantothenate was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-11-06T17:53:36Z [Term] id: FYECO:0000190 name: DAPI added def: "An experimental condition in which DAPI was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "4',6-diamidino-2-phenylindole added" EXACT [CHEBI:51231] is_obsolete: true created_by: antonialock creation_date: 2012-11-07T09:34:15Z [Term] id: FYECO:0000191 name: + biotin def: "An experimental condition in which biotin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-08T14:23:51Z [Term] id: FYECO:0000192 name: biotin absent def: "Biotin was completely excluded from the experimental medium/buffer." [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonialock creation_date: 2012-11-08T14:24:28Z [Term] id: FYECO:0000193 name: + dethiobiotin def: "An experimental condition in which dethiobiotin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "desthiobiotin added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-08T14:27:59Z [Term] id: FYECO:0000194 name: + limited biotin def: "An experimental condition in which biotin was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-11-08T14:29:02Z [Term] id: FYECO:0000195 name: + limited dethiobiotin def: "An experimental condition in which dethiobiotin was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] synonym: "limited desthiobiotin added" EXACT [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-11-08T14:29:19Z [Term] id: FYECO:0000196 name: glucose MM, urea nitrogen source def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with urea as the nitrogen source." [PomBase:al] synonym: "glucose minimal medium, urea nitrogen source" EXACT [PomBase:al] synonym: "standard glucose minimal medium, urea nitrogen source" RELATED [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2012-11-08T18:22:08Z [Term] id: FYECO:0000197 name: + limited nickel def: "An experimental condition in which nickel was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-11-08T18:23:55Z [Term] id: FYECO:0000198 name: + Ni ions def: "An experimental condition in which nickel ions were added to the assay buffer in excess compared to standard assay buffers." [PomBase:al] synonym: "nickel ions added" EXACT [PomBase:al] is_a: FYECO:0000030 ! + ions created_by: antonialock creation_date: 2012-11-08T19:06:15Z [Term] id: FYECO:0000199 name: + lys def: "An experimental condition in which lysine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "lysine added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-08T19:41:42Z [Term] id: FYECO:0000200 name: + peptone def: "An experimental condition in which peptone was added to the medium or assay buffer in excess. Peptone is a mixture of nutrients generated by proteolytic digestion of animal protein with pepsin and serves as a nitrogen and amino acid source in some culture media. Peptone is not normally added to S. pombe growth media." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-13T12:38:35Z [Term] id: FYECO:0000201 name: YPD def: "Experiments were performed in rich medium containing peptone, yeast extract and other components. The concentration of glucose is typically around 2-3%. Note that peptone, which is a mixture of nutrients generated by proteolytic digestion of animal protein with trypsin, is not normally a component of S. pombe rich media (it is however normally present in S. cerevisiae rich media)." [PomBase:al] synonym: "glucose rich medium, peptone/YE nitrogen source" BROAD [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2012-11-13T12:40:59Z [Term] id: FYECO:0000202 name: chilled cells def: "Cells were chilled by placing them on ice." [PomBase:al] synonym: "cold" RELATED [PomBase:al] synonym: "ice" RELATED [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2012-11-15T17:01:01Z [Term] id: FYECO:0000203 name: diploid cells alt_id: FYECO:0000204 def: "An experimental condition in which an experiment was performed in diploid cells." [PomBase:al] synonym: "2N cells" EXACT [PomBase:al] is_obsolete: true created_by: antonialock creation_date: 2012-11-22T20:39:13Z [Term] id: FYECO:0000205 name: + Na2SO4 def: "An experimental condition in which sodium sulfate (Na2SO4) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "sodium sulfate added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-26T16:28:39Z [Term] id: FYECO:0000206 name: + CsCl def: "An experimental condition in which caesium chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "caesium chloride added" EXACT [PomBase:al] synonym: "cesium chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-26T16:36:59Z [Term] id: FYECO:0000207 name: + KCl def: "An experimental condition in which potassium chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "potassium chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-26T16:38:19Z [Term] id: FYECO:0000208 name: + NH4Cl def: "An experimental condition in which ammonium chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "ammonium chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-26T16:39:07Z [Term] id: FYECO:0000209 name: + biochanin A def: "An experimental condition in which biochanin A (BCA) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "BCA added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2012-11-29T12:46:27Z [Term] id: FYECO:0000210 name: + limited glucose def: "An experimental condition in which glucose was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2012-11-30T11:01:55Z [Term] id: FYECO:0000211 name: + MMS def: "An experimental condition in which MMS (methyl methanesulfonate) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "methyl methanesulfonate added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-02-06T17:28:39Z [Term] id: FYECO:0000212 name: + ethanol def: "An experimental condition in which ethanol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-02-06T17:29:28Z [Term] id: FYECO:0000213 name: non-fermentable carbon sources medium def: "Experiments were performed in medium containing non-fermentable carbon sources. Please note that more specific terms exist, such as glycerol and ethanol rich medium that can be used if this is known." [PomBase:al] is_a: FYECO:0000009 ! grouping growth medium created_by: antonialock creation_date: 2013-02-06T17:30:02Z [Term] id: FYECO:0000214 name: + MgCl2 def: "An experimental condition in which magnesium chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "magnesium chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-02-06T17:30:51Z [Term] id: FYECO:0000215 name: low pH def: "Any experimental condition where the pH of the medium or assay buffer is lower than the standard pombe growth medium of pH of ~5.6." [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2013-02-13T09:20:16Z [Term] id: FYECO:0000216 name: growth <24 hrs def: "Cells were grown for up to 24 hours." [PomBase:al] synonym: "growth <24 hours" EXACT [PomBase:vw] synonym: "overnight culture" RELATED [PomBase:mah] is_a: FYECO:0000122 ! grouping growth timing created_by: antonialock creation_date: 2013-06-07T13:12:40Z [Term] id: FYECO:0000217 name: growth >24 hrs def: "Cells were grown for more than 24 hours." [PomBase:al] synonym: "growth >24 hours" EXACT [PomBase:vw] is_a: FYECO:0000122 ! grouping growth timing created_by: antonialock creation_date: 2013-06-07T13:15:54Z [Term] id: FYECO:0000218 name: + beta-estradiol def: "An experimental condition in which beta-estradiol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-06-17T18:33:07Z [Term] id: FYECO:0000219 name: nitrogen source shift, proline to glutamate def: "A nitrogen source shift condition in which cells are first grown in a medium with proline as the nitrogen source, and then shifted to a medium with glutamate as the nitrogen source." [PomBase:al] is_a: FYECO:0000221 ! nitrogen source shift created_by: antonialock creation_date: 2013-07-17T11:45:53Z [Term] id: FYECO:0000220 name: nitrogen source shift, glutamate to proline def: "A nitrogen source shift condition in which cells are first grown in a medium with glutamate as the nitrogen source, and then shifted to a medium with proline as the nitrogen source." [PomBase:al] is_a: FYECO:0000221 ! nitrogen source shift created_by: antonialock creation_date: 2013-07-17T11:46:38Z [Term] id: FYECO:0000221 name: nitrogen source shift def: "Any condition in which cells are first grown in a medium with one nitrogen source, and then shifted to a medium with a different nitrogen source." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2013-07-17T11:49:40Z [Term] id: FYECO:0000222 name: + nocodazole def: "An experimental condition in which nocodazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-08-14T12:04:01Z [Term] id: FYECO:0000223 name: + 1-NM-PP1 def: "An experimental condition in which 1NM-PP1 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ 1NM-PP1" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-08-23T17:19:43Z [Term] id: FYECO:0000224 name: + his def: "An experimental condition in which histidine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "histidine added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-08-28T14:30:11Z [Term] id: FYECO:0000225 name: + ura def: "An experimental condition in which uracil was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "uracil added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-08-28T14:31:08Z [Term] id: FYECO:0000226 name: + leu def: "An experimental condition in which leucine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "leucine added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-08-28T14:31:46Z [Term] id: FYECO:0000227 name: permissive temperature def: "A temperature at which a conditional (heat- or cold-sensitive) allele grows, usually at a normal or nearly normal rate." [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2013-09-09T15:28:48Z [Term] id: FYECO:0000228 name: semi-permissive temperature def: "A temperature at which a conditional (heat- or cold-sensitive) allele can grow, but does not grow at a normal rate." [PomBase:al] synonym: "semipermissive temperature" EXACT [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2013-09-09T15:29:04Z [Term] id: FYECO:0000229 name: restrictive temperature def: "A temperature at which a conditional (heat- or cold-sensitive) mutant does not grow." [PomBase:al] synonym: "non-permissive temperature" EXACT [PomBase:al] synonym: "nonpermissive temperature" EXACT [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonialock creation_date: 2013-09-09T15:29:19Z [Term] id: FYECO:0000230 name: low nitrogen glucose MM def: "Experiments were performed in glucose-based medium containing much less nitrogen than standard minimal medium (such as EMM). Note that for mating assays sporulation medium may be more appropriate." [PomBase:al] synonym: "low nitrogen glucose minimal medium" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2013-09-12T13:05:38Z [Term] id: FYECO:0000231 name: + Na2SO3 def: "An experimental condition in which sodium sulfite (Na2SO3) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "sodium sulfite added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-09-17T13:02:29Z [Term] id: FYECO:0000232 name: temperature shift, low to standard def: "A sequential growth condition in which cells are first grown at a low temperature (below 25 degrees Celsius) followed by growth at standard temperature (in the range around 25-32 degrees Celsius)." [PomBase:al] synonym: "growth at low temperature followed by growth at standard temperature" RELATED [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2013-09-23T16:29:20Z [Term] id: FYECO:0000233 name: uracil absent def: "Uracil was completely excluded from the experimental medium/buffer." [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonialock creation_date: 2013-09-25T15:13:50Z [Term] id: FYECO:0000234 name: + sulfite def: "An experimental condition in which sulfite was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-10-14T16:09:44Z [Term] id: FYECO:0000235 name: + microtubule depolymerizing drugs def: "An experimental condition in which a microtubule depolymerizing drug was added to the medium or assay buffer." [PomBase:al] synonym: "+ MBC" NARROW [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2013-11-11T09:15:19Z [Term] id: FYECO:0000236 name: maltose YE def: "Experiments were performed in rich medium containing maltose as the carbon source, yeast extract and other components." [PomBase:al] synonym: "maltose rich medium" BROAD [PomBase:al] is_a: FYECO:0000080 ! grouping rich medium created_by: antonialock creation_date: 2013-11-25T11:32:09Z [Term] id: FYECO:0000237 name: growth >48 hrs def: "Cells were grown for more than 48 hours." [PomBase:al] synonym: "growth >48 hours" EXACT [PomBase:vw] is_a: FYECO:0000122 ! grouping growth timing created_by: antonialock creation_date: 2013-11-26T14:29:10Z [Term] id: FYECO:0000238 name: grouping condition combinations subset: Grouping_terms is_a: FYECO:0000001 ! fission yeast phenotype condition created_by: antonialock creation_date: 2013-12-02T14:58:52Z [Term] id: FYECO:0000239 name: grouping starvation and timing subset: Grouping_terms is_a: FYECO:0000238 ! grouping condition combinations created_by: antonialock creation_date: 2013-12-02T15:01:10Z [Term] id: FYECO:0000240 name: >7 days nitrogen starvation def: "Cells were subjected to nitrogen starvation for more than 7 days." [PomBase:al] is_a: FYECO:0000239 ! grouping starvation and timing created_by: antonialock creation_date: 2013-12-02T15:01:33Z [Term] id: FYECO:0000241 name: 28 days nitrogen starvation followed by 10-50 hours recovery in minimal medium def: "Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 28 days. This medium is then replaced with nitrogen containing minimal medium and cells are allowed to recover for 10-50 hours." [PomBase:al] is_a: FYECO:0000110 ! nitrogen starvation and recovery created_by: antonialock creation_date: 2013-12-02T15:06:40Z [Term] id: FYECO:0000242 name: + rapamycin def: "An experimental condition in which rapamycin was added to the medium or assay buffer." [PomBase:al] synonym: "+ sirolimus" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-02-24T14:54:23Z [Term] id: FYECO:0000243 name: + LMB def: "An experimental condition in which leptomycin B (LMB) was added to the medium or assay buffer. LMB inhibits the nuclear export receptor Crm1." [PomBase:al] synonym: "+ leptomycin B" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-03-05T11:48:25Z [Term] id: FYECO:0000244 name: + 3MB-PP1 def: "An experimental condition in which 3MB-PP1 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-03-10T18:02:53Z [Term] id: FYECO:0000245 name: + phosphate def: "An experimental condition in which phosphate was added to the medium or assay buffer in excess." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-03-26T22:25:16Z [Term] id: FYECO:0000246 name: glucose MM, proline nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with proline as the nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-03-31T16:09:08Z [Term] id: FYECO:0000247 name: + CdSO4 def: "An experimental condition in which cadmium sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ cadmium sulfate" RELATED [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-04-02T13:05:28Z [Term] id: FYECO:0000248 name: + latA def: "An experimental condition in which latrunculin A was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ latrunculin A" RELATED [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-04-03T09:33:05Z [Term] id: FYECO:0000249 name: + CuSO4 def: "An experimental condition in which copper(II) sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ copper(II) sulfate" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-04-03T10:27:00Z [Term] id: FYECO:0000250 name: + AgNO3 def: "An experimental condition in which silver nitrate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ silver nitrate" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-04-03T10:27:19Z [Term] id: FYECO:0000251 name: + amitrole def: "An experimental condition in which amitrole (3-amino-1,2,4-triazole) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. synonym: "+ 3-amino-1,2,4-triazole" EXACT [CHEBI:40036] synonym: "+ 3-AT" EXACT [PomBase:mah] synonym: "+ 3AT" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2014-04-16T15:38:38Z [Term] id: FYECO:0000252 name: + glycerol def: "An experimental condition in which glycerol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "glycerol added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-06-09T12:15:31Z [Term] id: FYECO:0000253 name: + limited ammonium def: "An experimental condition in which ammonium was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] synonym: "+ limited NH4Cl" RELATED [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2014-06-09T18:27:39Z [Term] id: FYECO:0000254 name: glucose MM, ammonium nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with ammonium as the nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-06-09T18:52:46Z [Term] id: FYECO:0000255 name: arginine absent def: "Arginine was completely excluded from the experimental medium/buffer." [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonialock creation_date: 2014-06-12T09:54:53Z [Term] id: FYECO:0000256 name: glycerol MM with trace ethanol def: "Experiments were performed in minimal medium where glycerol is the main carbon source, but the medium also contained a small amount of ethanol." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-06-23T14:37:11Z [Term] id: FYECO:0000257 name: + cycloheximide def: "An experimental condition in which cycloheximide was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ CHX" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-06-25T16:34:11Z [Term] id: FYECO:0000258 name: + arsenate def: "An experimental condition in which arsenate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-06-25T23:09:28Z [Term] id: FYECO:0000259 name: + arsenic def: "An experimental condition in which arsenic was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-06-25T23:11:38Z [Term] id: FYECO:0000260 name: HU block and release def: "Cells were blocked using hydroxyurea and subsequently released from the block." [PomBase:al] is_a: FYECO:0000238 ! grouping condition combinations created_by: antonialock creation_date: 2014-07-07T09:53:23Z [Term] id: FYECO:0000261 name: + CaCl2 def: "An experimental condition in which calcium chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ calcium chloride" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-07-09T15:29:27Z [Term] id: FYECO:0000262 name: glucose minimal medium, excluding nitrogen def: "Experiments were performed in a defined growth medium excluding nitrogen." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-07-14T10:44:33Z [Term] id: FYECO:0000263 name: glucose MM, glutamate nitrogen source def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with L-glutamatic acid as the nitrogen source." [https://www.sunrisescience.com/pages/ystmedia_sp_emm.html, PomBase:mah] synonym: "EMMG" RELATED [PomBase:al] synonym: "glucose minimal medium, glutamate nitrogen source" EXACT [PomBase:al] synonym: "PMG" NARROW [PomBase:al] synonym: "standard glucose minimal medium, glutamate nitrogen source" RELATED [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: midori creation_date: 2014-07-24T10:08:27Z [Term] id: FYECO:0000264 name: glucose MM, organic nitrogen source, no inorganic nitrogen def: "Experiments were performed in medium containing glucose, salts, water and with an exclusively organic nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-07-31T14:36:47Z [Term] id: FYECO:0000265 name: >6 hrs in nitrogen starvation def: "Cells were kept in nitrogen starvation for more than 6 hours." [PomBase:al] synonym: ">6 hours in nitrogen starvation" EXACT [PomBase:vw] is_a: FYECO:0000122 ! grouping growth timing created_by: antonialock creation_date: 2014-08-01T13:48:41Z [Term] id: FYECO:0000266 name: glucose MM, xanthine nitrogen source def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with xanthine as the nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-08-06T10:43:17Z [Term] id: FYECO:0000267 name: + naphthaleneacetic acid def: "An experimental condition in which naphthaleneacetic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-09-04T16:21:32Z [Term] id: FYECO:0000268 name: + trichostatin A def: "An experimental condition in which trichostatin A was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-09-04T16:24:29Z [Term] id: FYECO:0000269 name: + mevalonate def: "An experimental condition in which mevalonate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-09-05T23:39:08Z [Term] id: FYECO:0000270 name: + TEV protease def: "An experimental condition in which TEV protease was added to the medium or assay buffer. TEV protease cleaves a highly specific protein sequence and thus allows for artificial proteolytic regulation of genes engineered to contain the cleavage site." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-11-03T15:47:05Z [Term] id: FYECO:0000271 name: + SNP def: "An experimental condition in which sodium nitroprusside (SNP) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ sodium nitroprusside" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2014-11-28T16:38:25Z [Term] id: FYECO:0000272 name: glucose MM, no nitrogen def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with no nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-12-08T09:25:07Z [Term] id: FYECO:0000273 name: glucose MM, no glucose def: "Experiments were performed in medium containing salts, water, a nitrogen source but no glucose." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2014-12-08T09:25:55Z [Term] id: FYECO:0000274 name: glucose MM, adenine nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with adenine as the nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2015-01-21T14:51:57Z [Term] id: FYECO:0000275 name: competitive culture def: "A culture in which strains of different genetic backgrounds are grown together in one culture." [PomBase:al] is_a: FYECO:0000009 ! grouping growth medium created_by: antonialock creation_date: 2015-01-29T16:41:07Z [Term] id: FYECO:0000276 name: glucose MM, uracil nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with uracil as the nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2015-02-12T11:59:26Z [Term] id: FYECO:0000277 name: + bleomycin def: "An experimental condition in which bleomycin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2015-03-23T15:40:05Z [Term] id: FYECO:0000278 name: glucose MM, isoleucine nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with isoleucine as the nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2015-03-31T11:12:05Z [Term] id: FYECO:0000279 name: + MnCl2 def: "An experimental condition in which manganese chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "manganese chloride added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2015-06-04T17:30:51Z [Term] id: FYECO:0000280 name: + limited leucine def: "An experimental condition in which leucine was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] xref: PMID:7565608 is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2015-06-09T02:34:30Z [Term] id: FYECO:0000281 name: + FeCl3 def: "An experimental condition in which iron trichloride was added to the medium or assay buffers." [PomBase:al] synonym: "iron chloride added" RELATED [PomBase:al] synonym: "iron trichloride added" EXACT [PomBase:al] synonym: "iron(III) chloride" EXACT [PomBase:al] xref: PMID:7565608 is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2015-06-10T02:34:30Z [Term] id: FYECO:0000282 name: + limited aminolevulinic acid def: "An experimental condition in which aminolevulinic acid was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] synonym: "+ limited ALA" EXACT [PomBase:al] xref: PMID:7565608 is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2015-06-10T02:34:30Z [Term] id: FYECO:0000283 name: + hemin def: "An experimental condition in which hemin was added to the medium or assay buffers." [PomBase:al] xref: PMID:7565608 is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2015-06-10T02:34:30Z [Term] id: FYECO:0000284 name: + thiosulfate def: "An experimental condition in which thiosulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ S2O32-" EXACT [PomBase:al] xref: PMID:7565608 is_a: FYECO:0000011 ! grouping limited created_by: antonialock creation_date: 2015-06-10T02:34:30Z [Term] id: FYECO:0000285 name: cold shock and recovery at normal temperature def: "Cells were cold shocked followed by recovery at a temperature range normal for standard pombe growth." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2012-05-23T11:07:16Z [Term] id: FYECO:0000286 name: glucose MM, no adenine def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with no adenine." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2015-08-06T09:25:07Z [Term] id: FYECO:0000287 name: + nigericin def: "An experimental condition in which nigericin was added to the medium or assay buffer." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2015-10-23T09:25:07Z [Term] id: FYECO:0000288 name: temperature shift, high to standard def: "A sequential growth condition in which cells are first grown at a high temperature (roughly above 25 degrees Celsius) followed by growth at standard temperature (in the range around 25-32 degrees Celsius)." [PomBase:al] synonym: "growth at high temperature followed by growth at standard temperature" RELATED [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2015-11-05T16:29:20Z [Term] id: FYECO:0000289 name: galactose MM def: "Experiments were performed in medium containing galactose (typically <2% w/v), salts and water." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2015-11-18T09:25:07Z [Term] id: FYECO:0000290 name: + carbendazim def: "An experimental condition in which carbendazim was added to the experimental medium." [PomBase:al] synonym: "CBZ added" EXACT [PomBase:al] synonym: "MBC added" EXACT [PomBase:al] synonym: "mecarzole added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2016-02-29T09:25:07Z [Term] id: FYECO:0000291 name: temperature block and release def: "Cells were blocked using nonpermissive temperature and subsequently released from the block." [PomBase:al] is_a: FYECO:0000238 ! grouping condition combinations created_by: antonialock creation_date: 2016-02-29T09:53:23Z [Term] id: FYECO:0000292 name: nitrogen starvation at normal temperature and shift to high temperature in rich medium def: "Cells were first nitrogen starved at standard growth temperature, and then transferred to a rich medium at high temperature." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2016-04-04T16:29:20Z [Term] id: FYECO:0000293 name: temperature shift, low to high def: "A sequential growth condition in which cells are first grown at a low temperature followed by growth at standard temperature." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2016-05-24T16:29:20Z [Term] id: FYECO:0000294 name: temperature shift, high to low def: "A sequential growth condition in which cells are first grown at a high temperature followed by growth at low temperature." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2016-05-24T16:30:20Z [Term] id: FYECO:0000295 name: two-step temperature shift, low to standard, standard to high def: "A sequential growth condition in which cells are first grown at a low temperature, transferred to standard, and then to high temperature." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonialock creation_date: 2016-06-14T16:30:20Z [Term] id: FYECO:0000296 name: glucose MM, phenylalanine nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with phenylalanine as the nitrogen source." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonialock creation_date: 2016-06-21T09:51:08Z [Term] id: FYECO:0000297 name: + NaAsO2 def: "An experimental condition in which sodium arsenite (NaAsO2) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "sodium arsenite added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2016-06-30T03:02:06Z [Term] id: FYECO:0000298 name: + zymolyase def: "An experimental condition in which zymolyase was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2016-07-07T03:02:06Z [Term] id: FYECO:0000299 name: + queuosine def: "An experimental condition in which queuosine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-07-26T16:38:18Z [Term] id: FYECO:0000300 name: temperature shift, standard to high def: "A sequential growth condition in which cells are first grown at standard temperature (in the range around 25-32 degrees Celsius) followed by growth at a high temperature (above 32 degrees Celsius)." [PomBase:mah] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: midori creation_date: 2016-08-26T15:34:02Z [Term] id: FYECO:0000301 name: + queuine def: "An experimental condition in which queuine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2016-09-05T13:27:23Z [Term] id: FYECO:0000302 name: + ammonium iron(2+) sulfate def: "An experimental condition in which ammonium iron(2+) sulfate (ferrous ammonium sulfate) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ ferrous ammonium sulfate (anhydrous)" RELATED [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-09-06T12:58:40Z [Term] id: FYECO:0000303 name: + menadione def: "An experimental condition in which menadione was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-09-07T16:00:02Z [Term] id: FYECO:0000304 name: + TBHP def: "An experimental condition in which tert-butyl hydroperoxide was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "TBH" EXACT [PomBase:al] synonym: "tert-butyl hydroperoxide" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-09-07T16:45:31Z [Term] id: FYECO:0000305 name: ionizing radiation def: "Cells or samples were exposed to ionizing radiation." [PomBase:al] synonym: "gamma irradiation" NARROW [PomBase:al] synonym: "gamma radiation" NARROW [PomBase:al] is_a: FYECO:0000132 ! grouping experimental environment created_by: antonia creation_date: 2016-10-04T09:59:06Z [Term] id: FYECO:0000306 name: two-step temperature shift, standard to low, low to high def: "A sequential growth condition in which cells are first grown at a standard temperature, transferred to low, and then to high temperature." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: antonia creation_date: 2016-10-07T16:53:27Z [Term] id: FYECO:0000307 name: + cutin-1 def: "An experimental condition in which a cutin-1 was added to the medium or assay buffer in excess compared to standard medium or assay buffers. Cutin-1 targets the beta-subunit of fatty acid synthase." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-10-26T11:00:25Z [Term] id: FYECO:0000308 name: + doxorubicin def: "An experimental condition in which doxorubicin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ 14-hydroxydaunomycin " RELATED [CHEBI:28748] synonym: "+ 14-hydroxydaunorubicine " RELATED [CHEBI:28748] synonym: "+ adriamycin" RELATED [CHEBI:28748] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-10-27T14:15:21Z [Term] id: FYECO:0000309 name: nitrogen starvation followed by heat shock and recovery at normal temperature def: "Cells are first grown in minimal medium lacking nitrogen, then subjected to heat shock, and are then allowed to recover in rich medium at standard temperature." [PomBase:al] synonym: "nitrogen starvation followed by heat shock and recovery at permissive temperature" RELATED [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: midori creation_date: 2016-11-23T12:06:19Z [Term] id: FYECO:0000310 name: glucose starvation and recovery def: "Cells are first grown in minimal medium lacking glucose and are then allowed to recover in rich medium." [PomBase:mah] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: midori creation_date: 2016-11-23T12:10:30Z [Term] id: FYECO:0000311 name: + CoCl2 def: "An experimental condition in which cobalt chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ cobalt chloride" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-12-06T11:12:22Z [Term] id: FYECO:0000312 name: + SAM def: "An experimental condition in which SAM (S-adenosyl-L-methionine) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ S-adenosyl-L-methionine" EXACT [PomBase:al] synonym: "+ S-adenosylmethionine" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2016-12-19T15:40:24Z [Term] id: FYECO:0000313 name: + TOP-53 def: "An experimental condition in which TOP-53 (a drug that targets topoisomerase II) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2017-02-01T14:16:48Z [Term] id: FYECO:0000314 name: + CPT def: "An experimental condition in which camptothecin (CPT) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ camptothecin" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2017-02-02T13:49:19Z [Term] id: FYECO:0000315 name: UV def: "Cells or samples were exposed to ultraviolet light." [PomBase:mah] synonym: "ultraviolet light" EXACT [PomBase:mah] synonym: "UV irradiation" EXACT [PomBase:mah] is_a: FYECO:0000132 ! grouping experimental environment created_by: midori creation_date: 2017-03-15T15:49:25Z [Term] id: FYECO:0000316 name: + limited uracil def: "An experimental condition in which uracil was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000011 ! grouping limited created_by: midori creation_date: 2017-05-03T15:21:50Z [Term] id: FYECO:0000317 name: + urea def: "An experimental condition in which urea was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "urea added" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2017-05-03T15:22:18Z [Term] id: FYECO:0000318 name: + compactin def: "An experimental condition in which compactin was added to the medium or assay buffer." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-06-08T11:09:11Z [Term] id: FYECO:0000319 name: + BFA def: "An experimental condition in which brefeldin A (BFA) was added to the medium or assay buffer." [PomBase:al] synonym: "+ brefeldin A" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-06-08T11:10:00Z [Term] id: FYECO:0000320 name: + oleate def: "An experimental condition in which oleate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-06-15T09:33:40Z [Term] id: FYECO:0000321 name: + copper chelator def: "An experimental condition in which a copper chelator was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ tetrathiomolybdate" NARROW [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-07-27T11:17:51Z [Term] id: FYECO:0000322 name: + bortezomib def: "An experimental condition in which bortezomib was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-08-15T22:24:50Z [Term] id: FYECO:0000323 name: cold shock and recovery at high temperature def: "Cells were cold shocked followed by recovery at a temperature range higher than normal for standard pombe growth." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: midori creation_date: 2017-08-16T10:53:24Z [Term] id: FYECO:0000324 name: + latB def: "An experimental condition in which latrunculin B was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ latrunculin B" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-08-31T16:36:03Z [Term] id: FYECO:0000325 name: + ethylene glycol def: "An experimental condition in which ethylene glycol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-09-13T13:58:23Z [Term] id: FYECO:0000326 name: + 4-NQO def: "An experimental condition in which 4-nitroquinoline N-oxide was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ 4-nitroquinoline N-oxide" EXACT [PomBase:mah] synonym: "+ 4NQO" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2017-10-12T10:57:15Z [Term] id: FYECO:0000327 name: + MG132 def: "An experimental condition in which the proteasome inhibitor MG132 was added to the medium or assay buffer." [PomBase:al] synonym: "proteasome inhibitor" BROAD [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2017-10-13T10:55:27Z [Term] id: FYECO:0000328 name: LNB glucose medium def: "LNB medium is a Low Nutrient medium containing yeast nitrogen base without amino acids, glucose, salts and vitamins." [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonia creation_date: 2017-10-20T16:39:21Z [Term] id: FYECO:0000329 name: + formamide def: "An experimental condition in which formamide was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2018-01-03T14:51:41Z [Term] id: FYECO:0000330 name: + limited iron def: "An experimental condition in which iron was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000011 ! grouping limited created_by: antonia creation_date: 2018-01-17T17:46:19Z [Term] id: FYECO:0000331 name: glucose MM, arginine nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with arginine as the nitrogen source." [PomBase:al] synonym: "glucose minimal medium, arginine nitrogen source" EXACT [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: antonia creation_date: 2018-01-25T10:36:13Z [Term] id: FYECO:0000332 name: + 2-DG def: "An experimental condition in which 2-deoxyglucose was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "2-deoxy-D-glucose added" EXACT [PomBase:al] synonym: "2-deoxyglucose added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2018-02-02T19:12:20Z [Term] id: FYECO:0000333 name: + 20 standard aa's def: "An experimental condition in which all 20 standard amino acids were added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "22 standard amino acids added" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2018-03-14T15:52:29Z [Term] id: FYECO:0000334 name: + phloxine B def: "An experimental condition in which phloxine B was added to the medium or assay buffer in excess." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2018-03-16T15:49:27Z [Term] id: FYECO:0000335 name: + AP20187 def: "An experimental condition in which AP20187 was added to the medium or assay buffer." [CHEBI:136847] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2018-03-20T22:06:35Z [Term] id: FYECO:0000336 name: + cerulenin def: "An experimental condition in which cerulenin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2018-07-27T20:46:16Z [Term] id: FYECO:0000337 name: inorganic phosphate absent def: "Inorganic phosphate was excluded from the experimental medium/buffer." [PomBase:al] is_a: FYECO:0000120 ! grouping absent created_by: antonia creation_date: 2018-08-17T12:28:46Z [Term] id: FYECO:0000338 name: + 3-BrB-PP1 def: "An experimental condition in which 3-BrB-PP1 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2018-10-31T15:42:37Z [Term] id: FYECO:0000339 name: + auxin def: "An experimental condition in which auxin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2018-11-06T15:00:52Z [Term] id: FYECO:0000340 name: + iron chelator def: "An experimental condition in which an iron chelator was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2018-12-10T11:58:03Z [Term] id: FYECO:0000341 name: + DTT def: "An experimental condition in which dithiothreitol (DTT) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ dithiothreitol" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2018-12-10T11:59:14Z [Term] id: FYECO:0000342 name: + ICRF-193 def: "An experimental condition in which ICRF-193 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2019-01-30T15:21:24Z [Term] id: FYECO:0000343 name: + (NH4)2SO4 def: "An experimental condition in which ammonium sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ ammonium sulfate" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2019-01-30T19:18:34Z [Term] id: FYECO:0000344 name: + MnSO4 def: "An experimental condition in which manganese sulfate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ manganese sulfate" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonia creation_date: 2019-01-30T19:19:34Z [Term] id: FYECO:0000345 name: zinc starvation followed by zinc shock def: "Zinc was reintroduced to cells following a period of zinc starvation." [PomBase:al] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: Antonia creation_date: 2019-02-06T12:06:19Z [Term] id: FYECO:0000346 name: synchronous culture def: "Any set of experimental conditions that places all cells in a culture into the same growth stage (e.g. cell cycle phase)." [PomBase:al] comment: This term blurs the distinction between experimental conditions and experimental methods, but is included for use where phenotypes differ between synchronous and asynchronous cultures, and the information cannot be captured with more specific condition terms. is_a: FYECO:0000132 ! grouping experimental environment created_by: midori creation_date: 2019-03-13T11:41:51Z [Term] id: FYECO:0000347 name: + vanoxerine def: "An experimental condition in which vanoxerine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: Antonia creation_date: 2019-05-19T12:06:19Z [Term] id: FYECO:0000348 name: + hexestrol def: "An experimental condition in which hexestrol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: Antonia creation_date: 2019-05-19T12:06:19Z [Term] id: FYECO:0000349 name: + clomifene def: "An experimental condition in which clomifene was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ clomiphene" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: Antonia creation_date: 2019-05-19T12:06:19Z [Term] id: FYECO:0000350 name: + ketoconazole def: "An experimental condition in which ketoconazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: Antonia creation_date: 2019-05-19T12:06:19Z [Term] id: FYECO:0000351 name: + terconazole def: "An experimental condition in which terconazol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: Antonia creation_date: 2019-05-19T12:06:19Z [Term] id: FYECO:0000352 name: + aminolevulinic acid def: "An experimental condition in which aminolevulinic acid was added to the medium or assay buffers." [PomBase:al] synonym: "+ ALA" EXACT [PomBase:al] xref: PMID:29549126 is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2019-05-27T02:34:30Z [Term] id: FYECO:0000353 name: + AgNP def: "An experimental condition in which silver nanoparticles were added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PMID:29294138] synonym: "+ silver nanoparticles" EXACT [PMID:29294138] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2019-06-28T15:36:18Z [Term] id: FYECO:0000354 name: + phleomycin def: "An experimental condition in which phleomycin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2019-10-09T15:45:37Z [Term] id: FYECO:0000355 name: + R-limonene def: "An experimental condition in which R-limonene was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ (4R)-limonene" EXACT [CHEBI:15382] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-02-04T11:09:34Z [Term] id: FYECO:0000356 name: + CK-666 def: "An experimental condition in which CK-666 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ CK666" EXACT [CHEBI:78843] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2019-11-22T16:20:24Z [Term] id: FYECO:0000357 name: + aspartate def: "An experimental condition in which aspartic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "+ Asp" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: Antonia creation_date: 2019-12-13T14:13:14Z [Term] id: FYECO:0000358 name: YES + galactose def: "Experiments were performed in rich medium containing yeast extract, galactose, glucose, and other components. The concentrations of galactose and glucose are typically around 2-3% each." [PomBase:mah] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "rich medium with glucose and galactose" RELATED [PomBase:mah] is_a: FYECO:0000080 ! grouping rich medium created_by: midori creation_date: 2020-02-12T14:16:32Z [Term] id: FYECO:0000359 name: + clotrimazole def: "An experimental condition in which clotrimazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-04-02T10:17:34Z [Term] id: FYECO:0000360 name: + terbinafine def: "An experimental condition in which terbinafine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-04-02T10:19:16Z [Term] id: FYECO:0000361 name: + acetaldehyde def: "An experimental condition in which acetaldehyde was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-04-17T16:23:15Z [Term] id: FYECO:0000362 name: + formaldehyde def: "An experimental condition in which formaldehyde was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-04-17T16:25:48Z [Term] id: FYECO:0000363 name: two-step temperature shift, standard to high, high to standard def: "A sequential growth condition in which cells are first grown at standard temperature, transferred to high, and then back to standard temperature." [PomBase:mah] is_a: FYECO:0000094 ! grouping sequential growth conditions created_by: midori creation_date: 2020-05-04T12:26:18Z [Term] id: FYECO:0000364 name: + diamide def: "An experimental condition in which diamide was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ N,N,N',N'-tetramethyldiazene-1,2-dicarboxamide" EXACT [CHEBI:48958] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-05-04T14:58:43Z [Term] id: FYECO:0000365 name: MBC block and release def: "Cells were blocked using carbendazim (MBC) and subsequently released from the block." [PomBase:mah] is_a: FYECO:0000238 ! grouping condition combinations created_by: midori creation_date: 2020-06-22T11:12:58Z [Term] id: FYECO:0000366 name: single passage culture def: "A growth condition in which cells are grown in a medium that is not refreshed over the time before cells are assayed." [PomBase:mah] is_a: FYECO:0000132 ! grouping experimental environment created_by: midori creation_date: 2020-09-02T09:02:40Z [Term] id: FYECO:0000367 name: multiple passage culture def: "A growth condition in which cells are grown in a medium that is refreshed at least once over the time before cells are assayed. For example, an aliquot of a liquid culture may be transferred to fresh medium at specified time intervals." [PomBase:mah] is_a: FYECO:0000132 ! grouping experimental environment created_by: midori creation_date: 2020-09-02T09:05:28Z [Term] id: FYECO:0000368 name: + tamoxifen def: "An experimental condition in which tamoxifen was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-09-02T09:10:24Z [Term] id: FYECO:0000369 name: + beta-glucanase def: "An experimental condition in which beta-glucanase was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-09-02T09:12:18Z [Term] id: FYECO:0000370 name: + FOA def: "An experimental condition in which 5-fluoroorotic acid (FOA) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ 5-fluoroorotic acid" EXACT [CHEBI:74498] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-09-03T12:33:57Z [Term] id: FYECO:0000371 name: + DMSO def: "An experimental condition in which dimethyl sulfoxide (DMSO) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ dimethyl sulfoxide" EXACT [CHEBI:28262] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-11-03T12:03:41Z [Term] id: FYECO:0000372 name: + manumycin A def: "An experimental condition in which manumycin A was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ manu-A" EXACT [] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-11-12T14:11:44Z [Term] id: FYECO:0000373 name: + thiolutin def: "An experimental condition in which thiolutin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2020-11-17T14:23:37Z [Term] id: FYECO:0000374 name: glucose MM, serine nitrogen source def: "Experiments were performed in medium containing glucose, salts, water and with serine as the nitrogen source." [PomBase:mah] synonym: "glucose minimal medium, serine nitrogen source" EXACT [PomBase:mah] is_a: FYECO:0000013 ! grouping defined medium created_by: midori creation_date: 2020-12-16T16:04:45Z [Term] id: FYECO:0000375 name: + streptonigrin def: "An experimental condition in which streptonigrin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-01-05T15:09:41Z [Term] id: FYECO:0000376 name: pyruvate MM def: "Experiments were performed in defined medium containing pyruvate, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain." [PomBase:mah] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "pyruvate minimal medium" EXACT [PomBase:mah] is_a: FYECO:0000013 ! grouping defined medium created_by: midori creation_date: 2021-01-20T10:05:49Z [Term] id: FYECO:0000377 name: + 5-FU def: "An experimental condition in which 5-fluorouracil (5-FU) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ 5-fluorouracil" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-01-21T15:04:35Z [Term] id: FYECO:0000378 name: + respiratory chain inhibitor def: "An experimental condition in which a substance that inhibits one or more respiratory electron transport chain complexes was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ electron transport chain inhibitor" EXACT [PomBase:mah] synonym: "+ mitochondrial complex III/IV inhibitor" RELATED [PMID:33400299] synonym: "+ respiratory complex III inhibitor" RELATED [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-01-21T15:11:02Z [Term] id: FYECO:0000379 name: + diuron def: "An experimental condition in which diuron was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ 3-(3,4-dichlorophenyl)-1,1-dimethylurea" EXACT [CHEBI:116509] synonym: "+ DCMU" EXACT [CHEBI:116509] synonym: "+ respiratory chain inhibitor" RELATED [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-01-21T15:14:29Z [Term] id: FYECO:0000380 name: + NaN3 def: "An experimental condition in which sodium azide was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ respiratory chain inhibitor" RELATED [PomBase:mah] synonym: "+ sodium azide" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-01-21T15:20:45Z [Term] id: FYECO:0000381 name: thiamine absent def: "An experimental condition in which thiamine was completely excluded from the experimental medium/buffer." [PomBase:mah] is_a: FYECO:0000120 ! grouping absent created_by: midori creation_date: 2021-02-22T13:53:17Z [Term] id: FYECO:0000382 name: fructose MM def: "Experiments were performed in defined medium containing sucrose, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain." [PomBase:mah] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "fructose minimal medium" EXACT [PomBase:mah] is_a: FYECO:0000013 ! grouping defined medium created_by: midori creation_date: 2021-03-15T16:49:24Z [Term] id: FYECO:0000383 name: wild type cells of opposite mating type added to culture def: "An experimental condition in which cells are grown in a culture, and wild-type cells of the opposite mating type are added to the culture." [PMID:30279276, PomBase:mah, PomBase:sm] comment: Mating phenotypes such as shmoo formation, cell fusion, etc. can be assessed by adding cells of the opposite mating type as a source of pheromone. synonym: "mating with WT" RELATED [PomBase:sm] is_a: FYECO:0000132 ! grouping experimental environment created_by: midori creation_date: 2021-03-16T09:05:28Z [Term] id: FYECO:0000384 name: isogenic cells of opposite mating type added to culture def: "An experimental condition in which cells are grown in a culture, and isogenic cells of the opposite mating type are added to the culture." [PMID:30279276, PomBase:mah, PomBase:sm] comment: Mating phenotypes such as shmoo formation, cell fusion, etc. can be assessed by adding cells of the opposite mating type as a source of pheromone. synonym: "self mating" RELATED [PomBase:sm] is_a: FYECO:0000132 ! grouping experimental environment created_by: midori creation_date: 2021-03-16T09:05:28Z [Term] id: FYECO:0000385 name: + fluconazole def: "An experimental condition in which fluconazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-04-11T10:18:01Z [Term] id: FYECO:0000386 name: CPT block and release def: "Cells were blocked using camptothecin (CPT) and subsequently released from the block." [PomBase:mah] is_a: FYECO:0000238 ! grouping condition combinations created_by: midori creation_date: 2021-04-13T14:01:14Z [Term] id: FYECO:0000387 name: + tebuconazole def: "An experimental condition in which tebuconazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-04-13T15:11:30Z [Term] id: FYECO:0000388 name: + MPA def: "An experimental condition in which mycophenolic acid (MPA) was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ mycophenolic acid" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-05-17T13:11:22Z [Term] id: FYECO:0000389 name: glucose MM, sulfate sulfur source def: "Experiments were performed in medium containing glucose, salts, water and with sulfate ions as the sulfur source." [PomBase:mah] synonym: "glucose minimal medium, sulfate sulfur source" EXACT [PomBase:mah] synonym: "glucose minimal medium, sulphate sulphur source" EXACT [PomBase:mah] synonym: "glucose MM, sulphate sulphur source" EXACT [PomBase:mah] is_a: FYECO:0000013 ! grouping defined medium created_by: midori creation_date: 2021-07-30T13:12:45Z [Term] id: FYECO:0000390 name: + torin1 def: "An experimental condition in which torin1 was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "Torin1" EXACT [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2021-10-28T15:54:28Z [Term] id: FYECO:0000391 name: + echinocandin def: "An experimental condition in which an echinocandin class of drug was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000392 name: + caspofungin def: "An experimental condition in which caspofungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] is_a: FYECO:0000391 ! + echiniocandin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000393 name: + caspofungin SLD def: "An experimental condition in which caspofungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers at sub lethal dose for the assayed cell density." [PomBase:vw] is_a: FYECO:0000392 ! + caspofungin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000394 name: + caspofungin LD def: "An experimental condition in which caspofungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers at lethal dose for the assayed cell density." [PomBase:vw] is_a: FYECO:0000393 ! + caspofungin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000395 name: + micafungin def: "An experimental condition in which micafungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] is_a: FYECO:0000391 ! + echiniocandin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000396 name: + micafungin SLD def: "An experimental condition in which micafungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers at sub lethal dose for the assayed cell density." [PomBase:vw] is_a: FYECO:0000395 ! + micafungin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000397 name: + micafungin LD def: "An experimental condition in which micafungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers at lethal dose for the assayed cell density." [PomBase:vw] is_a: FYECO:0000395 ! + micafungin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000398 name: + anidulafungin def: "An experimental condition in which anidulafungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] is_a: FYECO:0000391 ! + echiniocandin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000399 name: + anidulafungin SLD def: "An experimental condition in which anidulafungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers at sub lethal dose for the assayed cell density." [PomBase:vw] is_a: FYECO:0000398 ! + anidulafungin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000400 name: + anidulafungin LD def: "An experimental condition in which anidulafungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers at lethal dose for the assayed cell density." [PomBase:vw] is_a: FYECO:0000398 ! + anidulafungin created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000401 name: transient amino acid starvation < 1 hour def: "An experimental condition in which caspofungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] def: "An experimental condition in which amino acids were transiently removed from medium or assay buffers." [PomBase:vw] is_a: FYECO:0000090 ! limited nitrogen created_by: vw creation_date: 2022-01-13T13:00:00Z [Term] id: FYECO:0000402 name: xylose added def: "An experimental condition in which xylose was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term can be used both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. created_by: vw is_a: FYECO:0000109 ! grouping excess creation_date: 2022-01-20T03:11:16Z [Term] id: FYECO:0000403 name: glucose MM, glutamine nitrogen source def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with L-glutamine as the nitrogen source." [https://www.sunrisescience.com/pages/ystmedia_sp_emm.html, PomBase:mah] synonym: "EMMG" RELATED [PomBase:al] synonym: "glucose minimal medium, glutamine nitrogen source" EXACT [PomBase:al] synonym: "standard glucose minimal medium, glutamine nitrogen source" RELATED [PomBase:al] is_a: FYECO:0000013 ! grouping defined medium created_by: vw creation_date: 2022-01-30T10:08:27Z [Term] id: FYECO:0000404 name: + zinc sulfate def: "Experiments were performed in a medium containing zinc sulfate" [PomBase:vw] synonym: "+ zinc sulphate" EXACT [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2022-04-15T10:08:00Z [Typedef] id: part_of name: part_of xref: OBO_REL:part_of created_by: antonialock creation_date: 2012-02-07T11:57:34Z [Term] id: FYECO:0000405 name: + ile def: "An experimental condition in which isoleucine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] synonym: "isoleucine added" EXACT [PomBase:al] is_a: FYECO:0000109 ! grouping excess created_by: antonialock creation_date: 2022-05-31T15:46:50Z [Term] id: FYECO:0000406 name: + val def: "An experimental condition in which valine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "valine added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-05-31T15:46:50Z [Term] id: FYECO:0000407 name: + benzamidine def: "An experimental condition in which benzamidine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "benzamidine added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000408 name: + canavanin def: "An experimental condition in which canavanin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "canavanin added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000409 name: + 2,2'-dipyridyl def: "An experimental condition in which 2,2'-dipyridyl was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "2,2'-dipyridyl added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000410 name: + 3,4-dihydrocoumarin def: "An experimental condition in which 3,4-dihydrocoumarin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "3,4-dihydrocoumarin added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000411 name: + egtazic acid def: "An experimental condition in which egtazic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "egtazic acid added" EXACT [PomBase:mlr] synonym: "EGTA added" EXACT [PomBase:mlr] synonym: "+ EGTA" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000412 name: + tunicamycin def: "An experimental condition in which tunicamycin was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "tunicamycin added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000413 name: + valproic acid def: "An experimental condition in which valproic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "valproic acid added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000414 name: xylose YE def: "Experiments were performed in rich medium containing xylose as the carbon source, yeast extract and other components. The concentration of xylose is typically around 2%." [PomBase:mlr] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "xylose rich medium" BROAD [PomBase:mlr] is_a: FYECO:0000080 ! grouping rich medium created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000415 name: + tea tree oil def: "An experimental condition in which tea tree oil was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mlr] synonym: "tea tree oil added" EXACT [PomBase:mlr] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000416 name: glucose MM, cysteine nitrogen source def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with L-glutamatic acid as the nitrogen source." [https://www.sunrisescience.com/pages/ystmedia_sp_emm.html, PomBase:mlr] synonym: "glucose minimal medium, cysteine nitrogen source" EXACT [PomBase:mlr] synonym: "standard glucose minimal medium, cysteine nitrogen source" RELATED [PomBase:mlr] is_a: FYECO:0000013 ! grouping defined medium created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000417 name: glucose MM, methionine nitrogen source def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with L-glutamatic acid as the nitrogen source." [https://www.sunrisescience.com/pages/ystmedia_sp_emm.html, PomBase:mlr] synonym: "glucose minimal medium, methionine nitrogen source" EXACT [PomBase:mlr] synonym: "standard glucose minimal medium, methionine nitrogen source" RELATED [PomBase:mlr] is_a: FYECO:0000013 ! grouping defined medium created_by: mlr creation_date: 2022-09-28T14:15:00Z [Term] id: FYECO:0000418 name: leucine absent def: "An experimental condition in which leucine was completely excluded from the experimental medium/buffer." [PomBase:vw] is_a: FYECO:0000120 ! grouping absent created_by: vw creation_date: 2022-10-31T13:53:17Z [Term] id: FYECO:0000419 name: + ethyl methanesulfonate def: "An experimental condition in which ethyl methanesulfonate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ ethyl methanesulfonate" EXACT [CHEBI:23994] is_a: FYECO:0000109 ! grouping excess created_by: midori creation_date: 2019-11-22T16:20:24Z [Term] id: FYECO:0000420 name: + ferrichrome def: "An experimental condition in which ferrichrome was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2023-05-16T16:20:24Z [Term] id: FYECO:0000421 name: + (8E,10S)-10-hydroxy-8-octadecenoic acid def: "An experimental condition in which (R,Z)-10-hydroxyoctadec-8-enoic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ (R,Z)-10-hydroxyoctadec-8-enoic acid" EXACT [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2023-05-16T16:20:24Z [Term] id: FYECO:0000422 name: no glucose YES def: "Experiments were performed in YES containing yeast extract and other components, but without glucose. The concentration of glucose is very low (eg around 0.1%)." [PomBase:al] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. is_a: FYECO:0000080 ! grouping rich medium created_by: vw creation_date: 2023-05-22T16:20:24Z [Term] id: FYECO:0000423 name: + ciclopirox olamine def: "An experimental condition in which ciclopirox olamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ ciclopirox olamine" EXACT [CHEBI:31398] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000424 name: + amorolfine def: "An experimental condition in which amorolfine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ amorolfine" EXACT [CHEBI:599440] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000425 name: X-rays def: "Cells or samples were exposed to X-rays." [PomBase:mlr] synonym: "X rays" EXACT [PomBase:mlr] is_a: FYECO:0000305 ! grouping experimental environment created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000426 name: glucose MM, lysine nitrogen source def: "Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with lysine as the nitrogen source." [PomBase:mlr] synonym: "glucose minimal medium, lysine nitrogen source" EXACT [PomBase:mlr] synonym: "standard glucose minimal medium, lysine nitrogen source" RELATED [PomBase:mlr] is_a: FYECO:0000013 ! grouping defined medium created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000427 name: fructose YE def: "Experiments were performed in rich medium containing fructose as the carbon source, yeast extract and other components. The concentration of fructose is typically around 2%." [PomBase:mlr] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "fructose rich medium" BROAD [PomBase:mlr] is_a: FYECO:0000080 ! grouping rich medium created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000428 name: ethanol YE def: "Experiments were performed in rich medium containing ethanol as the carbon source, yeast extract and other components. The concentration of ethanol is typically around 2%." [PomBase:mlr] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "ethanol rich medium" BROAD [PomBase:mlr] is_a: FYECO:0000080 ! grouping rich medium created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000429 name: YE with trace glucose def: "Experiments were performed in rich medium where the medium contained trace amounts of glucose (<0.1%)." [PomBase:mlr] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "very low glucose YE" EXACT [PomBase:mlr] synonym: "rich medium with trace glucose" EXACT [PomBase:mlr] is_a: FYECO:0000013 ! grouping defined medium created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000430 name: MM with trace glucose def: "Experiments were performed in minimal medium where the medium contained trace amounts of glucose (<0.1%)." [PomBase:mlr] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "very low glucose MM" EXACT [PomBase:mlr] synonym: "minimal medium with trace glucose" EXACT [PomBase:mlr] is_a: FYECO:0000013 ! grouping defined medium created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000431 name: + itraconazole def: "An experimental condition in which itraconazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:mah] synonym: "+ itraconazole" EXACT [CHEBI:6076] is_a: FYECO:0000109 ! grouping excess created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000432 name: galactose YE def: "Experiments were performed in rich medium containing galactose as the carbon source, yeast extract and other components. The concentration of galactose is typically around 2%." [PomBase:mlr] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "galactose rich medium" BROAD [PomBase:mlr] is_a: FYECO:0000080 ! grouping rich medium created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000433 name: mannitol YE def: "Experiments were performed in rich medium containing mannitol as the carbon source, yeast extract and other components. The concentration of mannitol is typically around 2%." [PomBase:mlr] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. synonym: "mannitol rich medium" BROAD [PomBase:mlr] is_a: FYECO:0000080 ! grouping rich medium created_by: mlr creation_date: 2023-06-27T16:20:24Z [Term] id: FYECO:0000434 name: transient hydroxyurea treatment def: "Experiments were performed on normal medium after a short incubation in medium containing hydroxyurea." [PomBase:mlr] xref: PMID:37200372 is_a: FYECO:0000109 ! grouping excess synonym: "acute hydroxyurea treatment" BROAD [PMID:37200372] created_by: mlr creation_date: 2023-07-10T13:00:00Z [Term] id: FYECO:0000435 name: + CCCP def: "Experiments were performed carbonyl cyanide m-chlorophenyl hydrazone" [PomBase:vw] xref: PMID:37540145 is_a: FYECO:0000109 ! grouping excess synonym: "An experimental condition in which carbonyl cyanide m-chlorophenyl hydrazone was added to the medium or assay buffer in excess compared to standard medium or assay buffers." EXACT [PMID:37540145] created_by: vw creation_date: 2023-08-14T13:00:00Z [Term] id: FYECO:0000436 name: + FCCP def: "An experimental condition in which cyanide-p-trifluoromethoxyphenylhydrazone was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] xref: PMID:37590302 is_a: FYECO:0000109 ! grouping excess synonym: "carbonyl cyanide m-chlorophenyl hydrazone" EXACT [PMID:37590302] created_by: vw creation_date: 2023-09-01T13:00:00Z [Term] id: FYECO:0000437 name: + 5IAA def: "An experimental condition in which the auxin analogue 5-adamantyl-IAA was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] xref: PMID:37783794 is_a: FYECO:0000109 ! grouping excess synonym: "5-adamantyl-IAA" EXACT [PMID:37783794] created_by: vw creation_date: 2023-10-09T13:00:00Z [Term] id: FYECO:0000438 name: ePMGT def: "Experiments were performed in minimal media containing minimal glutamate plus thiamine." [PomBase:vw] xref: PMID:38133430 is_a: FYECO:0000013 ! grouping defined medium created_by: vw creation_date: 2023-13-30T13:00:00Z [Term] id: FYECO:0000439 name: + glycerophosphocholine def: "An experimental condition in which glycerophosphocholine was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] xref: PMID:38133430 is_a: FYECO:0000013 ! grouping defined medium created_by: vw creation_date: 2023-13-30T13:00:00Z [Term] id: FYECO:0000450 name: + miconazole def: "An experimental condition in which miconazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2024-04-27T10:18:01Z [Term] id: FYECO:0000451 name: + lactate def: "Experiments were performed in minimal medium containing a high concentration of lactate (>2%) as carbon source, salts and water." [PomBase:vw] comment: Use the medium terms to specify the general type of growth medium and its carbon source. If certain chemicals not normally found in the medium were added, please also use the 'chemical added/excluded' terms, for instance 'caffeine added' or 'nitrogen excluded'. If a chemical was added in a much lower quantity than normal, please use the 'limited chemical added' conditions, for instance 'limited adenine added'. is_a: FYECO:0000013 ! grouping defined medium created_by: vw creation_date: 2024-05-08T10:18:01Z [Term] id: FYECO:0000452 name: + MAP kinase inhibitor def: "An experimental condition in which a MAP kinase inhibitor was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:al] comment: Note that this term includes both when the chemical is not normally present in the buffer, or when the buffer normally contains much lower quantities of the chemical so that the chemical is added 'in excess'. is_a: FYECO:0000109 ! grouping excess created_by: vw synonym: "SP600125" NARROW [PomBase:vw] creation_date: 2024-05-08T10:18:01Z [Term] id: FYECO:0000453 name: recovery after trichostatin A treatment def: "cells are first grown in medium containing trichostatin A, this medium is then replaced with medium containing no trichostatin A ." [PomBase:vw] is_a: FYECO:0000009 ! grouping growth medium created_by: vw creation_date: 2024-06-08T10:18:01Z [Term] id: FYECO:0000454 name: + tetracycline def: "An experimental condition in which tetracycline was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:pc] is_a: FYECO:0000109 ! grouping excess created_by: pc creation_date: 2024-06-27T09:58:01Z [Term] id: FYECO:0000455 name: histidine absent def: "An experimental condition in which leucine was completely excluded from the experimental medium/buffer.." [PomBase:vw] is_a: FYECO:0000120 ! grouping absent created_by: vw creation_date: 2024-12-29T09:59:01Z [Term] id: FYECO:0000456 name: + pyrogallol def: "An experimental condition in which pyrogallol was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:pc] is_a: FYECO:0000109 ! grouping excess created_by: pc creation_date: 2025-01-07T10:11:01Z [Term] id: FYECO:0000457 name: + rolipram def: "An experimental condition in which the Type 4 phosphodiesterase (PDE4) inhibitor rolipram was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:pc] is_a: FYECO:0000109 ! grouping excess created_by: pc creation_date: 2025-01-07T10:52:01Z [Term] id: FYECO:0000458 name: 14 days nitrogen starvation def: "Cells were subjected to nitrogen starvation for 14 days." [PomBase:al] is_a: FYECO:0000239 ! grouping starvation and timing created_by: pc creation_date: 2025-02-13T16:15:33Z [Term] id: FYECO:0000459 name: + potassium nitrate def: "An experimental condition in which potassium nitrate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:pc] is_a: FYECO:0000109 ! grouping excess synonym: "+ KNO3" EXACT [PomBase:pc] created_by: pc creation_date: 2025-02-17T11:11:01Z [Term] id: FYECO:0000460 name: + potassium acetate def: "An experimental condition in which potassium acetate was added to the medium or assay buffer in excess compared to standard medium or assay buffers." [PomBase:pc] is_a: FYECO:0000109 ! grouping excess created_by: pc creation_date: 2025-02-17T11:12:01Z [Term] id: FYECO:0000461 name: recovery after latrunculin A treatment def: "cells are first grown in medium containing latrunculin A, this medium is then replaced with medium containing no latrunculin A ." [PomBase:pc] is_a: FYECO:0000009 ! grouping growth medium created_by: pc creation_date: 2025-03-25T16:18:01Z [Term] id: FYECO:0000462 name: absence of light def: "The assay, or growth of cells, was conducted in the absence of light." [PomBase:pc] is_a: FYECO:0000132 ! grouping experimental environment created_by: pc creation_date: 2025-04-04T18:04:49Z [Term] id: FYECO:0000463 name: presence of light def: "The assay, or growth of cells, was conducted in the presence of light." [PomBase:pc] is_a: FYECO:0000132 ! grouping experimental environment created_by: pc creation_date: 2025-04-04T18:05:49Z [Term] id: FYECO:0000464 name: MMS block and release def: "Cells were blocked using methyl methanesulfonate and subsequently released from the block." [PomBase:pc] is_a: FYECO:0000238 ! grouping condition combinations created_by: pc creation_date: 2025-07-08T15:42:23Z [Term] id: FYECO:0000465 name: 14 days glucose starvation followed by recovery in rich medium def: "Recovery from glucose starvation: cells are first grown in medium containing no glucose for 14 days, medium is then replaced with glucose containing rich medium." [PomBase:pc] is_a: FYECO:0000310 ! glucose starvation and recovery created_by: pc creation_date: 2025-08-27T14:05:19Z [Term] id: FYECO:0000466 name: protoplast def: "Experiment were performed using cells which had the cell wall removed" [PomBase:pc] is_a: FYECO:0000310 ! glucose starvation and recovery created_by: vw creation_date: 2025-09-27T14:05:19Z [Term] id: FYECO:0000467 name: +ethidium Bromide def: "An experimental condition in which ethidium bromide was added to the medium or assay buffer in excess compared to standard medium or assay buffers" [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2025-11-05T14:05:19Z [Term] id: FYECO:0000468 name: +chloramphenicol def: "An experimental condition in which chloramphenicol was added to the medium or assay buffer in excess compared to standard medium or assay buffers" [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2026-03-15T14:05:19Z [Term] id: FYECO:0000469 name: +p-Hydroxybenzoic acid def: "An experimental condition in which p-Hydroxybenzoic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers" [PomBase:vw] is_a: FYECO:0000109 ! grouping excess created_by: vw creation_date: 2026-08-21T14:05:19Z