format-version: 1.2
date: 13:08:2012 11:25
saved-by: midori
subsetdef: qc_do_not_annotate "Term not to be used for direct annotation"
default-namespace: fypo_extensions
ontology: fypo_extensions
remark: collection (perhaps temporary) of terms allowed in FYPO annotation has_penetrance and has_severity extensions

[Term]
id: FYPO_EXT:0000001
name: high
def: "large fraction of cells (penetrance) or strong phenotype (severity)" [PomBase:curators]
is_a: FYPO_EXT:1000001 ! FYPO severity extension
is_a: FYPO_EXT:1000002 ! FYPO penetrance extension

[Term]
id: FYPO_EXT:0000002
name: medium
def: "intermediate fraction of cells (penetrance) or moderate phenotype (severity)" [PomBase:curators]
is_a: FYPO_EXT:1000001 ! FYPO severity extension
is_a: FYPO_EXT:1000002 ! FYPO penetrance extension

[Term]
id: FYPO_EXT:0000003
name: low
def: "small fraction of cells (penetrance) or weak phenotype (severity)" [PomBase:curators]
is_a: FYPO_EXT:1000001 ! FYPO severity extension
is_a: FYPO_EXT:1000002 ! FYPO penetrance extension

[Term]
id: FYPO_EXT:0000004
name: complete
def: "all cells (penetrance)" [PomBase:curators]
synonym: "100%" EXACT [PomBase:curators]
synonym: "full" EXACT [PomBase:curators]
is_a: FYPO_EXT:1000002 ! FYPO penetrance extension


[Term]
id: FYPO_EXT:0000005
name: variable severity
def: "severity varies among cells in a population, i.e. not all show the same strength or severity of phenotype" [PomBase:mah]
synonym: "variable expressivity" EXACT [PomBase:curators]
is_a: FYPO_EXT:1000001 ! FYPO severity extension

[Term]
id: FYPO_EXT:1000000
name: FYPO extension
def: "root of FYPO extension ontology" [PomBase:mah]
subset: qc_do_not_annotate

[Term]
id: FYPO_EXT:1000001
name: FYPO severity extension
def: "FYPO extension ontology grouping term for relations relevant to severity" [PomBase:mah]
subset: qc_do_not_annotate
is_a: FYPO_EXT:1000000 ! FYPO extension

[Term]
id: FYPO_EXT:1000002
name: FYPO penetrance extension
def: "FYPO extension ontology grouping term for relations relevant to penetrance" [PomBase:mah]
subset: qc_do_not_annotate
is_a: FYPO_EXT:1000000 ! FYPO extension