format-version: 1.2
date: 16:02:2021 15:25
saved-by: midori
auto-generated-by: OBO-Edit 2.3.1
subsetdef: qc_do_not_annotate "Term not to be used for direct annotation"
default-namespace: PomGeneEx
ontology: PomGeneEx

[Term]
id: PomGeneEx:0000001
name: gene expression qualifier
def: "A qualifier that describes a level of gene expression, i.e. amount or rate of production of RNA or protein, observed under a given set of conditions or at an indicated time." [PomBase:mah]
subset: qc_do_not_annotate

[Term]
id: PomGeneEx:0000002
name: increased
def: "A gene expression qualifier that indicates that an RNA or protein is present at a higher level or produced at a faster rate under one set of conditions or at one indicated time than otherwise." [PomBase:mah]
synonym: "gene expression increased" EXACT [PomBase:mah]
synonym: "gene product level increased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000003
name: decreased
def: "A gene expression qualifier that indicates that an RNA or protein is present at a lower level or produced at a slower rate under one set of conditions or at one indicated time than otherwise." [PomBase:mah]
synonym: "gene expression decreased" EXACT [PomBase:mah]
synonym: "gene product level decreased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000004
name: unchanged
def: "A gene expression qualifier that indicates that an RNA or protein is present at the same level or produced at the same rate under one set of conditions or at one indicated time as otherwise." [PomBase:mah]
synonym: "gene expression unchanged" EXACT [PomBase:mah]
synonym: "gene product level unchanged" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000005
name: present
def: "A gene expression qualifier that indicates that an RNA or protein is present under a given set of conditions or at an indicated time." [PomBase:mah]
synonym: "gene expression present" EXACT [PomBase:mah]
synonym: "gene product present" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000006
name: absent
def: "A gene expression qualifier that indicates that an RNA or protein is not detectable under a given set of conditions or at an indicated time." [PomBase:mah]
synonym: "gene expression absent" EXACT [PomBase:mah]
synonym: "gene product absent" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000007
name: constant
def: "A gene expression qualifier that indicates that an RNA or protein is present at the same level or produced at a the same rate under two or more sets of conditions or over a time course." [PomBase:mah]
synonym: "gene expression constant" EXACT [PomBase:mah]
synonym: "gene product level constant" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000008
name: fluctuates
def: "A gene expression qualifier that indicates that an RNA or protein is present at levels, or produced at rates, that vary under two or more sets of conditions or over a time course." [PomBase:mah]
synonym: "gene expression fluctuates" EXACT [PomBase:mah]
synonym: "gene product level fluctuates" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000009
name: RNA expression level
namespace: PomGeneExRNA
def: "A qualifier that describes a level of RNA observed under a given set of conditions or at an indicated time." [PomBase:mah]
subset: qc_do_not_annotate
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000010
name: protein expression level
namespace: PomGeneExProt
def: "A qualifier that describes a level of protein observed under a given set of conditions or at an indicated time." [PomBase:mah]
subset: qc_do_not_annotate
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000011
name: RNA level increased
namespace: PomGeneExRNA
def: "A gene expression qualifier that indicates that an RNA is present at a higher level under one set of conditions or at one indicated time than otherwise." [PomBase:mah]
synonym: "increased RNA level" EXACT [PomBase:mah]
synonym: "RNA expression increased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000002 ! increased
is_a: PomGeneEx:0000009 ! RNA expression level

[Term]
id: PomGeneEx:0000012
name: RNA level decreased
namespace: PomGeneExRNA
def: "A gene expression qualifier that indicates that an RNA is present at a lower level under one set of conditions or at one indicated time than otherwise." [PomBase:mah]
synonym: "decreased RNA level" EXACT [PomBase:mah]
synonym: "RNA expression decreased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000003 ! decreased
is_a: PomGeneEx:0000009 ! RNA expression level

[Term]
id: PomGeneEx:0000013
name: RNA level unchanged
namespace: PomGeneExRNA
def: "A gene expression qualifier that indicates that an RNA is present at the same level under one set of conditions or at one indicated time as otherwise." [PomBase:mah]
synonym: "RNA expression unchanged" EXACT [PomBase:mah]
synonym: "unchanged RNA level" EXACT [PomBase:mah]
is_a: PomGeneEx:0000004 ! unchanged
is_a: PomGeneEx:0000009 ! RNA expression level

[Term]
id: PomGeneEx:0000014
name: RNA present
namespace: PomGeneExRNA
def: "A gene expression qualifier that indicates that an RNA is present under a given set of conditions or at an indicated time." [PomBase:mah]
synonym: "RNA expression present" EXACT [PomBase:mah]
is_a: PomGeneEx:0000005 ! present
is_a: PomGeneEx:0000009 ! RNA expression level

[Term]
id: PomGeneEx:0000015
name: RNA absent
namespace: PomGeneExRNA
def: "A gene expression qualifier that indicates that an RNA is not detectable under a given set of conditions or at an indicated time." [PomBase:mah]
synonym: "RNA expression absent" EXACT [PomBase:mah]
is_a: PomGeneEx:0000006 ! absent
is_a: PomGeneEx:0000009 ! RNA expression level

[Term]
id: PomGeneEx:0000016
name: RNA level constant
namespace: PomGeneExRNA
def: "A gene expression qualifier that indicates that an RNA is present at the same level under two or more sets of conditions or over a time course." [PomBase:mah]
synonym: "constant RNA level" EXACT [PomBase:mah]
synonym: "RNA expression constant" EXACT [PomBase:mah]
is_a: PomGeneEx:0000007 ! constant
is_a: PomGeneEx:0000009 ! RNA expression level

[Term]
id: PomGeneEx:0000017
name: RNA level fluctuates
namespace: PomGeneExRNA
def: "A gene expression qualifier that indicates that an RNA is present at levels that vary under two or more sets of conditions or over a time course." [PomBase:mah]
synonym: "fluctuating RNA level" EXACT [PomBase:mah]
synonym: "RNA expression fluctuates" EXACT [PomBase:mah]
is_a: PomGeneEx:0000008 ! fluctuates
is_a: PomGeneEx:0000009 ! RNA expression level

[Term]
id: PomGeneEx:0000018
name: protein level increased
namespace: PomGeneExProt
def: "A gene expression qualifier that indicates that a protein is present at a higher level under one set of conditions or at one indicated time than otherwise." [PomBase:mah]
synonym: "increased protein level" EXACT [PomBase:mah]
synonym: "protein expression increased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000002 ! increased
is_a: PomGeneEx:0000010 ! protein expression level

[Term]
id: PomGeneEx:0000019
name: protein level decreased
namespace: PomGeneExProt
def: "A gene expression qualifier that indicates that a protein is present at a lower level under one set of conditions or at one indicated time than otherwise." [PomBase:mah]
synonym: "decreased protein level" EXACT [PomBase:mah]
synonym: "protein expression decreased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000003 ! decreased
is_a: PomGeneEx:0000010 ! protein expression level

[Term]
id: PomGeneEx:0000020
name: protein level unchanged
namespace: PomGeneExProt
def: "A gene expression qualifier that indicates that a protein is present at the same level under one set of conditions or at one indicated time as otherwise." [PomBase:mah]
synonym: "protein expression unchanged" EXACT [PomBase:mah]
synonym: "unchanged protein level" EXACT [PomBase:mah]
is_a: PomGeneEx:0000004 ! unchanged
is_a: PomGeneEx:0000010 ! protein expression level

[Term]
id: PomGeneEx:0000021
name: protein present
namespace: PomGeneExProt
def: "A gene expression qualifier that indicates that a protein is present under a given set of conditions or at an indicated time." [PomBase:mah]
synonym: "protein expression present" EXACT [PomBase:mah]
is_a: PomGeneEx:0000005 ! present
is_a: PomGeneEx:0000010 ! protein expression level

[Term]
id: PomGeneEx:0000022
name: protein absent
namespace: PomGeneExProt
def: "A gene expression qualifier that indicates that a protein is not detectable under a given set of conditions or at an indicated time." [PomBase:mah]
synonym: "protein expression absent" EXACT [PomBase:mah]
is_a: PomGeneEx:0000006 ! absent
is_a: PomGeneEx:0000010 ! protein expression level

[Term]
id: PomGeneEx:0000023
name: protein level constant
namespace: PomGeneExProt
def: "A gene expression qualifier that indicates that a protein is present at the same level under two or more sets of conditions or over a time course." [PomBase:mah]
synonym: "constant protein level" EXACT [PomBase:mah]
synonym: "protein expression constant" EXACT [PomBase:mah]
is_a: PomGeneEx:0000007 ! constant
is_a: PomGeneEx:0000010 ! protein expression level

[Term]
id: PomGeneEx:0000024
name: protein level fluctuates
namespace: PomGeneExProt
def: "A gene expression qualifier that indicates that a protein is present at levels that vary under two or more sets of conditions or over a time course." [PomBase:mah]
synonym: "fluctuating protein level" EXACT [PomBase:mah]
synonym: "protein expression fluctuates" EXACT [PomBase:mah]
is_a: PomGeneEx:0000008 ! fluctuates
is_a: PomGeneEx:0000010 ! protein expression level

[Term]
id: PomGeneEx:0000025
name: ribosomal density
namespace: PomGeneExRD
def: "A qualifier that describes the fraction of ribosomes that are translating each codon of an mRNA, and reflects the average time spent by the ribosome on each codon." [PMID:29432178, PMID:33313903, PomBase:mah]
subset: qc_do_not_annotate
synonym: "ribosome density" EXACT [PomBase:mah]
synonym: "ribosome occupancy" EXACT [PomBase:mah]
is_a: PomGeneEx:0000001 ! gene expression qualifier

[Term]
id: PomGeneEx:0000026
name: ribosomal density increased
namespace: PomGeneExRD
def: "A qualifier that indicates that the fraction of ribosomes that are translating each codon of an mRNA is higher under one set of conditions or at one indicated time than otherwise." [PMID:29432178, PMID:33313903, PomBase:mah]
synonym: "increased ribosomal density" EXACT [PomBase:mah]
synonym: "ribosome density increased" EXACT [PomBase:mah]
synonym: "ribosome occupancy increased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000002 ! increased
is_a: PomGeneEx:0000025 ! ribosomal density

[Term]
id: PomGeneEx:0000027
name: ribosomal density decreased
namespace: PomGeneExRD
def: "A qualifier that indicates that the fraction of ribosomes that are translating each codon of an mRNA is lower under one set of conditions or at one indicated time than otherwise." [PMID:29432178, PMID:33313903, PomBase:mah]
synonym: "decreased ribosomal density" EXACT [PomBase:mah]
synonym: "ribosome density decreased" EXACT [PomBase:mah]
synonym: "ribosome occupancy decreased" EXACT [PomBase:mah]
is_a: PomGeneEx:0000003 ! decreased
is_a: PomGeneEx:0000025 ! ribosomal density