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protein coding gene - psm3 (SPAC10F6.09c) - mitotic/meiotic cohesin complex ATPase subunit Psm3/Smc3

Gene summary

Standard name
psm3
Systematic ID
SPAC10F6.09c
Product
mitotic/meiotic cohesin complex ATPase subunit Psm3/Smc3
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
smc3
UniProt ID
O42649
ORFeome ID
39/39B08
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 1220969..1224858 reverse strand

Annotation

Disease association

MONDO:0016033 - Cornelia de Lange syndrome

References:

MONDO:0012555 - Cornelia de Lange syndrome 3

References:

GO biological process

GO:0140588 - chromatin looping

References:

GO:0031619 - homologous chromosome orientation in meiotic metaphase I

References:

GO:0007064 - mitotic sister chromatid cohesion

References:

GO cellular component

GO:0000779 - condensed chromosome, centromeric region

References:

GO:0005829 - cytosol

References:

GO:0030893 - meiotic cohesin complex

References:

GO:0030892 - mitotic cohesin complex

References:

GO:0005634 - nucleus

References:

GO molecular function

GO:0005524 - ATP binding

References:

GO:0016887 - ATP hydrolysis activity

References:

GO:0061776 - ATP-dependent topological DNA co-entrapment activity

References:

GO:0003677 - DNA binding

References:

GO:0003690 - double-stranded DNA binding

References:

GO:0005515 - protein binding

References:

Modification

MOD:00064 - N6-acetyl-L-lysine

References:

MOD:00046 - O-phospho-L-serine

References:

MOD:00696 - phosphorylated residue

References:

MOD:01149 - sumoylated lysine

References:

MOD:01148 - ubiquitinylated lysine

References:

Multi-locus phenotype

FYPO:0005642 - abnormal meiotic homologous chromosome biorientation with abnormal kinetochore orientation

References:

Genotypes:

FYPO:0004481 - abolished cell population growth at high temperature

References:

Genotypes:

FYPO:0006424 - abolished meiotic sister chromatid cohesion at centromere during meiosis I

References:

Genotypes:

FYPO:0004486 - abolished protein deacetylation during vegetative growth

References:

Genotypes:

FYPO:0001168 - decreased ATPase activity

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0007498 - decreased chromatin binding at cohesin associated regions

References:

Genotypes:

FYPO:0003913 - decreased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0006483 - decreased mitotic cohesin ssDNA (lagging strand) loading

References:

Genotypes:

FYPO:0005557 - decreased mitotic cohesin unloading

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0007499 - increased chromatin binding at cohesin associated regions

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0001038 - increased protein phosphorylation during vegetative growth

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0000228 - lagging mitotic chromosomes

References:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

References:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0006425 - normal meiotic sister chromatid cohesion at centromere during meiosis I

References:

Genotypes:

FYPO:0001839 - normal minichromosome loss

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0001450 - resistance to cold

References:

Genotypes:

FYPO:0005634 - sister kinetochore dissociation in meiotic metaphase I with equational sister chromatid segregation in meiosis I

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Protein features

PBO:0111821 - SMC family

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000209 - abnormal attachment of spindle microtubules to kinetochore during meiosis I

References:

Genotypes:

FYPO:0000059 - abnormal mitotic cell cycle

References:

Genotypes:

FYPO:0000670 - abnormal mitotic sister chromatid separation

References:

Genotypes:

FYPO:0003674 - abolished ATPase activity

References:

Genotypes:

FYPO:0006424 - abolished meiotic sister chromatid cohesion at centromere during meiosis I

References:

Genotypes:

FYPO:0005556 - abolished mitotic cohesin loading

References:

Genotypes:

FYPO:0002393 - abolished protein acetylation during vegetative growth

References:

Genotypes:

FYPO:0000229 - cut

References:

Genotypes:

FYPO:0003165 - cut with abnormal chromosome segregation

References:

Genotypes:

FYPO:0001168 - decreased ATPase activity

References:

Genotypes:

FYPO:0002395 - decreased maintenance of protein localization to pericentric heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0004666 - decreased meiotic sister chromatid cohesion along chromosome arms

References:

Genotypes:

FYPO:0006423 - decreased meiotic sister chromatid cohesion at centromere during meiosis I

References:

Genotypes:

FYPO:0005555 - decreased mitotic cohesin loading

References:

Genotypes:

FYPO:0006483 - decreased mitotic cohesin ssDNA (lagging strand) loading

References:

Genotypes:

FYPO:0005557 - decreased mitotic cohesin unloading

References:

Genotypes:

FYPO:0002394 - decreased protein acetylation during vegetative growth

References:

Genotypes:

FYPO:0001324 - decreased protein level during vegetative growth

References:

Genotypes:

FYPO:0004212 - decreased protein localization to kinetochore during meiosis I

References:

Genotypes:

FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0001838 - decreased protein phosphorylation during vegetative growth

References:

Genotypes:

FYPO:0008189 - equational sister chromatid segregation during achiasmatic meiosis I

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0001490 - inviable elongated vegetative cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0001511 - inviable vegetative cell, abnormal cell shape, normal cell size

References:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

References:

Genotypes:

FYPO:0002396 - normal maintenance of protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0003176 - normal meiotic chromosome segregation

References:

Genotypes:

FYPO:0006425 - normal meiotic sister chromatid cohesion at centromere during meiosis I

References:

Genotypes:

FYPO:0001839 - normal minichromosome loss

References:

Genotypes:

FYPO:0001509 - normal protein localization to chromatin during vegetative growth

References:

Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0001310 - normal viability in stationary phase

References:

Genotypes:

FYPO:0000416 - premature mitotic sister chromatid separation

References:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

References:

Genotypes:

FYPO:0003182 - sister chromatid nondisjunction at meiosis II

References:

Genotypes:

FYPO:0005634 - sister kinetochore dissociation in meiotic metaphase I with equational sister chromatid segregation in meiosis I

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Subunit composition

PBO:0015221 - heteromeric(2)

References:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF02463SMC_NRecF/RecN/SMC_NPFAM
PF06470SMC_hingeSMC_hingePFAM
cd03272ABC_SMC3_eukSMC3_ABC_eukCDD
SM00968SMC_hinge_2SMC_hingeSMART
G3DSA:3.40.50.300:FF:000424FUNFAM
G3DSA:3.40.50.300:FF:000370FUNFAM
SSF75553Smc hinge domainSMC_hinge_sfSUPERFAMILY
SSF52540P-loop containing nucleoside triphosphate hydrolasesP-loop_NTPaseSUPERFAMILY
G3DSA:3.40.50.300P-loop_NTPaseGENE3D
G3DSA:3.30.70.1620GENE3D
G3DSA:1.20.1060.20GENE3D
PTHR43977STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3PANTHER
PIRSF005719SMCSMCPIRSF
CoilCoilCOILS

Orthologs

References / Literature

PMID:26537787 - Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast.
Køhler JB et al. Nat Commun 2015 Nov 05;6:8827
PMID:21340088 - Microarray-based target identification using drug hypersensitive fission yeast expressing ORFeome.
Arita Y et al. Mol Biosyst 2011 May;7(5):1463-72
PMID:31072933 - Suppressor screening reveals common kleisin-hinge interaction in condensin and cohesin, but different modes of regulation.
Xu X et al. Proc Natl Acad Sci U S A 2019 May 28;116(22):10889-10898
PMID:38780300 - Nitrogen availability is important for preventing catastrophic mitosis in fission yeast.
Zemlianski V et al. J Cell Sci 2024 May 23;
PMID:27798241 - An acetyltransferase-independent function of Eso1 regulates centromere cohesion.
Lin SJ et al. Mol Biol Cell 2016 Dec 15;27(25):4002-4010
PMID:16682348 - A screen for cohesion mutants uncovers Ssl3, the fission yeast counterpart of the cohesin loading factor Scc4.
Bernard P et al. Curr Biol 2006 May 09;16(9):875-81
PMID:28382430 - DNA Topoisomerase II modulates acetyl-regulation of cohesin-mediated chromosome dynamics.
Lin SJ et al. Curr Genet 2017 Oct;63(5):923-930
PMID:31278118 - Cohesin Impedes Heterochromatin Assembly in Fission Yeast Cells Lacking Pds5.
Folco HD et al. Genetics 2019 Sep;213(1):127-141
GO_REF:0000051 - S. pombe keyword mapping
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:25619765 - The CENP-A N-tail confers epigenetic stability to centromeres via the CENP-T branch of the CCAN in fission yeast.
Folco HD et al. Curr Biol 2015 Feb 02;25(3):348-356
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:26583750 - The ATPases of cohesin interface with regulators to modulate cohesin-mediated DNA tethering.
Çamdere G et al. Elife 2015 Nov 19;4
PMID:11069892 - Characterization of fission yeast cohesin: essential anaphase proteolysis of Rad21 phosphorylated in the S phase.
Tomonaga T et al. Genes Dev 2000 Nov 01;14(21):2757-70
PMID:29358048 - Establishment of DNA-DNA Interactions by the Cohesin Ring.
Murayama Y et al. Cell 2018 Jan 25;172(3):465-477.e15
PMID:21300781 - Psm3 acetylation on conserved lysine residues is dispensable for viability in fission yeast but contributes to Eso1-mediated sister chromatid cohesion by antagonizing Wpl1.
Feytout A et al. Mol Cell Biol 2011 Apr;31(8):1771-86
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:25993311 - Casein Kinase 1 and Phosphorylation of Cohesin Subunit Rec11 (SA3) Promote Meiotic Recombination through Linear Element Formation.
Phadnis N et al. PLoS Genet 2015 May;11(5):e1005225
PMID:38830897 - Sororin is an evolutionary conserved antagonist of WAPL.
Prusén Mota I et al. Nat Commun 2024 Jun 03;15(1):4729
GO_REF:0000002 - Comments
PMID:26687354 - DNA Entry into and Exit out of the Cohesin Ring by an Interlocking Gate Mechanism.
Murayama Y et al. Cell 2015 Dec 17;163(7):1628-40
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:12161753 - The transcriptional program of meiosis and sporulation in fission yeast.
Mata J et al. Nat Genet 2002 Sep;32(1):143-7
PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.
Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:33176147 - DNA Binding by the Mis4 Scc2 Loader Promotes Topological DNA Entrapment by the Cohesin Ring.
Kurokawa Y et al. Cell Rep 2020 Nov 10;33(6):108357
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:34309513 - A Brownian ratchet model for DNA loop extrusion by the cohesin complex.
Higashi TL et al. Elife 2021 Jul 26;10
PMID:38448160 - Phosphorylation of Rec8 cohesin complexes regulates mono-orientation of kinetochores in meiosis I.
Liu Y et al. Life Sci Alliance 2024 May;7(5)
PMID:12773391 - Condensin but not cohesin SMC heterodimer induces DNA reannealing through protein-protein assembly.
Sakai A et al. EMBO J 2003 Jun 02;22(11):2764-75
PMID:29898918 - Mutations that prevent methylation of cohesin render sensitivity to DNA damage in S. pombe .
Sanyal S et al. J Cell Sci 2018 Jul 06;131(13)
PMID:29735656 - Suppressor mutation analysis combined with 3D modeling explains cohesin's capacity to hold and release DNA.
Xu X et al. Proc Natl Acad Sci U S A 2018 May 22;115(21):E4833-E4842
PMID:21979813 - Acetylation regulates monopolar attachment at multiple levels during meiosis I in fission yeast.
Kagami A et al. EMBO Rep 2011 Oct 28;12(11):1189-95
PMID:12750522 - Distinct cohesin complexes organize meiotic chromosome domains.
Kitajima TS et al. Science 2003 May 16;300(5622):1152-5
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:19756689 - SUMOylation is required for normal development of linear elements and wild-type meiotic recombination in Schizosaccharomyces pombe.
Spirek M et al. Chromosoma 2010 Feb;119(1):59-72
PMID:16615890 - Meiotic proteins bqt1 and bqt2 tether telomeres to form the bouquet arrangement of chromosomes.
Chikashige Y et al. Cell 2006 Apr 07;125(1):59-69
PMID:28438891 - A second Wpl1 anti-cohesion pathway requires dephosphorylation of fission yeast kleisin Rad21 by PP4.
Birot A et al. EMBO J 2017 May 15;36(10):1364-1378
PMID:31895039 - The CDK Pef1 and protein phosphatase 4 oppose each other for regulating cohesin binding to fission yeast chromosomes.
Birot A et al. Elife 2020 Jan 02;9
PMID:24291789 - Biochemical reconstitution of topological DNA binding by the cohesin ring.
Murayama Y et al. Nature 2014 Jan 16;505(7483):367-71
PB_REF:0000003 - Disease Association Curation
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:32755595 - A Structure-Based Mechanism for DNA Entry into the Cohesin Ring.
Higashi TL et al. Mol Cell 2020 Sep 17;79(6):917-933.e9
PMID:28343969 - Pds5 Regulates Sister-Chromatid Cohesion and Chromosome Bi-orientation through a Conserved Protein Interaction Module.
Goto Y et al. Curr Biol 2017 Apr 03;27(7):1005-1012