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protein coding gene - ain1 (SPAC15A10.08) - alpha-actinin

Gene summary

Standard name
ain1
Systematic ID
SPAC15A10.08
Product
alpha-actinin
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O13728
ORFeome ID
46/46D09
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 3692790..3695013 forward strand

Annotation

Disease association

MONDO:0012808 - dilated cardiomyopathy 1AA

References:

MONDO:0011303 - focal segmental glomerulosclerosis 1

References:

MONDO:0032852 - myopathy, congenital, with structured cores and z-line abnormalities

References:

MONDO:0032853 - myopathy, distal, 6, adult-onset, autosomal dominant

References:

MONDO:0014078 - platelet-type bleeding disorder 15

References:

GO biological process

GO:0051764 - actin crosslink formation

References:

GO:0051017 - actin filament bundle assembly

References:

GO:0071520 - actomyosin contractile ring assembly actin filament bundle convergence

References:

GO cellular component

GO:0032432 - actin filament bundle

References:

GO:0042995 - cell projection

References:

GO:0110085 - mitotic actomyosin contractile ring

References:

GO molecular function

GO:0051015 - actin filament binding

References:

GO:0003786 - actin lateral binding

References:

GO:0030674 - protein-macromolecule adaptor activity

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Modification

MOD:00046 - O-phospho-L-serine

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MOD:00047 - O-phospho-L-threonine

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Multi-locus phenotype

FYPO:0002031 - abnormal actin cable morphology

References:

Genotypes:

FYPO:0000350 - abnormal actin cytoskeleton morphology during vegetative growth

References:

Genotypes:

FYPO:0000161 - abnormal actomyosin contractile ring assembly

References:

Genotypes:

FYPO:0003013 - abnormal actomyosin contractile ring disassembly

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Genotypes:

FYPO:0003338 - abnormal actomyosin contractile ring morphology

References:

Genotypes:

FYPO:0003444 - abnormal medial cortical node condensation

References:

Genotypes:

FYPO:0002023 - abnormal septum morphology during vegetative growth

References:

Genotypes:

FYPO:0001009 - abolished actomyosin contractile ring assembly

References:

Genotypes:

FYPO:0004562 - binucleate aseptate vegetative cell

References:

Genotypes:

FYPO:0000134 - branched, elongated, multiseptate cell

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0000729 - delayed onset of actomyosin contractile ring assembly

References:

Genotypes:

FYPO:0004653 - delayed onset of actomyosin contractile ring contraction

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Genotypes:

FYPO:0001253 - elongated multinucleate multiseptate vegetative cell, single septa between nuclei

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Genotypes:

FYPO:0002262 - inviable after spore germination, multiple cell divisions, elongated cell

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Genotypes:

FYPO:0004603 - inviable after spore germination, without cell division, elongated cell

References:

Genotypes:

FYPO:0002107 - inviable stubby vegetative cell

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0003988 - mislocalized actin cortical patches during vegetative growth

References:

Genotypes:

FYPO:0002436 - misoriented actin cables

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Genotypes:

FYPO:0001390 - misoriented septum during vegetative growth

References:

Genotypes:

Protein features

PBO:0111860 - calponin homology (CH) domain

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0000230 - abnormal actomyosin contractile ring actin filament organization

References:

Genotypes:

FYPO:0000161 - abnormal actomyosin contractile ring assembly

References:

Genotypes:

FYPO:0001364 - abnormal actomyosin contractile ring contraction

References:

Genotypes:

FYPO:0003013 - abnormal actomyosin contractile ring disassembly

References:

Genotypes:

FYPO:0003338 - abnormal actomyosin contractile ring morphology

References:

Genotypes:

FYPO:0002023 - abnormal septum morphology during vegetative growth

References:

Genotypes:

FYPO:0006026 - abolished actin filament bundle assembly

References:

Genotypes:

FYPO:0002561 - abolished protein localization to actomyosin contractile ring

References:

Genotypes:

FYPO:0002027 - angled actomyosin contractile ring

References:

Genotypes:

FYPO:0002699 - decreased protein localization to actomyosin contractile ring

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002049 - elongated multinucleate aseptate vegetative cell

References:

Genotypes:

FYPO:0006023 - elongated multinucleate multiseptate vegetative cell, irregular septum position

References:

Genotypes:

FYPO:0007798 - increased actin filament binding

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Genotypes:

FYPO:0009096 - increased cell population growth on xylose carbon source

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Genotypes:

FYPO:0000636 - increased cell population growth rate

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Genotypes:

FYPO:0004854 - increased protein localization to actomyosin contractile ring

References:

Genotypes:

FYPO:0001571 - increased protein-protein interaction

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Genotypes:

FYPO:0000339 - mislocalized septum during vegetative growth

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Genotypes:

FYPO:0001390 - misoriented septum during vegetative growth

References:

Genotypes:

FYPO:0001254 - multinucleate multiseptate vegetative cell, septa grouped

References:

Genotypes:

FYPO:0000061 - multinucleate vegetative cell

References:

Genotypes:

FYPO:0000118 - multiseptate vegetative cell

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Genotypes:

FYPO:0001294 - normal actin cortical patch localization

References:

Genotypes:

FYPO:0004097 - normal actomyosin contractile ring contraction

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Genotypes:

FYPO:0005947 - normal growth on potassium chloride

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Genotypes:

FYPO:0002559 - normal protein localization to actomyosin contractile ring

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Genotypes:

FYPO:0006187 - normal rate of actomyosin contractile ring assembly

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Genotypes:

FYPO:0002052 - normal sporulation frequency

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Genotypes:

FYPO:0001315 - normal vegetative cell morphology

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0007211 - premature actomyosin contractile ring assembly

References:

Genotypes:

FYPO:0001904 - premature actomyosin contractile ring disassembly

References:

Genotypes:

FYPO:0002445 - protein mislocalized to actin cortical patch

References:

Genotypes:

FYPO:0009041 - resistance to 2,2′-dipyridyl

References:

Genotypes:

FYPO:0009066 - resistance to amorolfine

References:

Genotypes:

FYPO:0000764 - resistance to cycloheximide

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Genotypes:

FYPO:0002693 - resistance to diamide

References:

Genotypes:

FYPO:0001453 - resistance to ethanol

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Genotypes:

FYPO:0001583 - resistance to lithium

References:

Genotypes:

FYPO:0009083 - resistance to lithium chloride and methyl methanesulfonate

References:

Genotypes:

FYPO:0009085 - resistance to lithium chloride and sodium dodecyl sulfate

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Genotypes:

FYPO:0000725 - resistance to methyl methanesulfonate

References:

Genotypes:

FYPO:0009081 - resistance to potassium chloride and methyl methanesulfonate

References:

Genotypes:

FYPO:0001034 - resistance to tunicamycin

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Genotypes:

FYPO:0000830 - resistance to vanadate

References:

Genotypes:

FYPO:0007931 - sensitive to egtazic acid

References:

Genotypes:

FYPO:0000842 - sensitive to ethanol during vegetative growth

References:

Genotypes:

FYPO:0006836 - sensitive to magnesium chloride

References:

Genotypes:

FYPO:0009088 - sensitive to magnesium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0001214 - sensitive to potassium chloride

References:

Genotypes:

FYPO:0007924 - sensitive to potassium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0009090 - sensitive to sodium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0000086 - sensitive to tacrolimus

References:

Genotypes:

FYPO:0000115 - sensitive to valproic acid

References:

Genotypes:

FYPO:0002437 - thick actin cables

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0000055 - no apparent S. cerevisiae ortholog

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF00307CHCH_domPFAM
PF08726EFhand_Ca_insenEF-hand_Ca_insenPFAM
cd21215CH_SpAIN1-like_rpt1CDD
cd21291CH_SpAIN1-like_rpt2CDD
PS00020ACTININ_2Actinin_actin-bd_CSPROSITE_PATTERNS
PS50021CHCH_domPROSITE_PROFILES
SM00033ch_5CH_domSMART
SM01184efhand_Ca_insen_2SMART
G3DSA:1.10.418.10:FF:000077FUNFAM
G3DSA:1.10.418.10:FF:000030FUNFAM
SSF47473EF-handEF-hand-dom_pairSUPERFAMILY
SSF47576Calponin-homology domain, CH-domainCH_dom_sfSUPERFAMILY
SSF46966Spectrin repeatSUPERFAMILY
G3DSA:1.20.58.60GENE3D
G3DSA:1.10.418.10CH_dom_sfGENE3D
G3DSA:1.10.238.10GENE3D
PTHR11915SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINPANTHER

Orthologs

References / Literature

PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:19139265 - The SH3 domains of two PCH family members cooperate in assembly of the Schizosaccharomyces pombe contractile ring.
Roberts-Galbraith RH et al. J Cell Biol 2009 Jan 12;184(1):113-27
PMID:15743909 - Profilin-mediated competition between capping protein and formin Cdc12p during cytokinesis in fission yeast.
Kovar DR et al. Mol Biol Cell 2005 May;16(5):2313-24
PMID:11294907 - Roles of a fimbrin and an alpha-actinin-like protein in fission yeast cell polarization and cytokinesis.
Wu JQ et al. Mol Biol Cell 2001 Apr;12(4):1061-77
PMID:33131769 - Cell cycle-dependent phosphorylation of IQGAP is involved in assembly and stability of the contractile ring in fission yeast.
Morita R et al. Biochem Biophys Res Commun 2021 Jan 01;534:1026-1032
PMID:21850271 - Genome-wide screening for genes associated with FK506 sensitivity in fission yeast.
Ma Y et al. PLoS One 2011;6(8):e23422
PMID:14602073 - Spatial and temporal pathway for assembly and constriction of the contractile ring in fission yeast cytokinesis.
Wu JQ et al. Dev Cell 2003 Nov;5(5):723-34
PMID:32892625 - Molecular Mechanism for the Actin-Binding Domain of α-Actinin Ain1 Elucidated by Molecular Dynamics Simulations and Mutagenesis Experiments.
Morita R et al. J Phys Chem B 2020 Oct 01;124(39):8495-8503
PMID:24192486 - The conserved Fanconi anemia nuclease Fan1 and the SUMO E3 ligase Pli1 act in two novel Pso2-independent pathways of DNA interstrand crosslink repair in yeast.
Fontebasso Y et al. DNA Repair (Amst) 2013 Dec;12(12):1011-23
PMID:23770677 - In vitro contraction of cytokinetic ring depends on myosin II but not on actin dynamics.
Mishra M et al. Nat Cell Biol 2013 Jul;15(7):853-9
PMID:16866873 - Actin-capping protein is involved in controlling organization of actin cytoskeleton together with ADF/cofilin, profilin and F-actin crosslinking proteins in fission yeast.
Nakano K et al. Genes Cells 2006 Aug;11(8):893-905
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:25688133 - The F-BAR Cdc15 promotes contractile ring formation through the direct recruitment of the formin Cdc12.
Willet AH et al. J Cell Biol 2015 Feb 16;208(4):391-9
PMID:29343550 - Cdk1-dependent phosphoinhibition of a formin-F-BAR interaction opposes cytokinetic contractile ring formation.
Willet AH et al. Mol Biol Cell 2018 Mar 15;29(6):713-721
PMID:16224022 - Counting cytokinesis proteins globally and locally in fission yeast.
Wu JQ et al. Science 2005 Oct 14;310(5746):310-4
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:28338873 - Molecular dissection of the actin-binding ability of the fission yeast α-actinin, Ain1, in vitro and in vivo.
Morita R et al. J Biochem 2017 Aug 01;162(2):93-102
PMID:39330407 - The Myosin-V Myo51 and Alpha-Actinin Ain1p Cooperate during Contractile Ring Assembly and Disassembly in Fission Yeast Cytokinesis.
Tyree ZL et al. J Fungi (Basel) 2024 Sep 12;10(9)
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:20603077 - Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site.
Roberts-Galbraith RH et al. Mol Cell 2010 Jul 09;39(1):86-99
PMID:26877082 - ER-PM Contacts Define Actomyosin Kinetics for Proper Contractile Ring Assembly.
Zhang D et al. Curr Biol 2016 Mar 07;26(5):647-53
PMID:22740629 - α-Actinin and fimbrin cooperate with myosin II to organize actomyosin bundles during contractile-ring assembly.
Laporte D et al. Mol Biol Cell 2012 Aug;23(16):3094-110
PMID:22024167 - Actin filament severing by cofilin is more important for assembly than constriction of the cytokinetic contractile ring.
Chen Q et al. J Cell Biol 2011 Oct 31;195(3):485-98
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:25452419 - Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence.
Sideri T et al. G3 (Bethesda) 2014 Dec 01;5(1):145-55
PMID:27075176 - The F-actin bundler α-actinin Ain1 is tailored for ring assembly and constriction during cytokinesis in fission yeast.
Li Y et al. Mol Biol Cell 2016 Jun 01;27(11):1821-33
PMID:31180322 - Cooperation between tropomyosin and α-actinin inhibits fimbrin association with actin filament networks in fission yeast.
Christensen JR et al. Elife 2019 Jun 10;8
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:21642440 - Actin filament bundling by fimbrin is important for endocytosis, cytokinesis, and polarization in fission yeast.
Skau CT et al. J Biol Chem 2011 Jul 29;286(30):26964-77
PMID:24798735 - The novel proteins Rng8 and Rng9 regulate the myosin-V Myo51 during fission yeast cytokinesis.
Wang N et al. J Cell Biol 2014 May 12;205(3):357-75
PMID:31509478 - The intrinsically disordered region of the cytokinetic F-BAR protein Cdc15 performs a unique essential function in maintenance of cytokinetic ring integrity.
Mangione MC et al. Mol Biol Cell 2019 Oct 15;30(22):2790-2801
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:27069798 - Characterisation of Schizosaccharomyces pombe α-actinin.
Addario B et al. PeerJ 2016;4:e1858