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protein coding gene - nuc2 (SPAC17C9.01c) - anaphase-promoting complex TPR lobe subcomplex subunit Apc3

Gene summary

Standard name
nuc2
Systematic ID
SPAC17C9.01c
Product
anaphase-promoting complex TPR lobe subcomplex subunit Apc3
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
apc3, SPAC1851.01
UniProt ID
P10505
ORFeome ID
33/33F10
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 4498096..4500581 forward strand

Annotation

GO biological process

GO:0031145 - anaphase-promoting complex-dependent catabolic process

References:

GO:0051728 - cell cycle switching, mitotic to meiotic cell cycle

References:

GO:0007091 - metaphase/anaphase transition of mitotic cell cycle

References:

GO:0000070 - mitotic sister chromatid segregation

References:

GO:0051306 - mitotic sister chromatid separation

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GO cellular component

GO:0005680 - anaphase-promoting complex

References:

GO:0032153 - cell division site

References:

GO:0005737 - cytoplasm

References:

GO:0005634 - nucleus

References:

GO molecular function

GO:0003677 - DNA binding

References:

GO:0140767 - enzyme-substrate adaptor activity

References:

GO:0005515 - protein binding

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

Multi-locus phenotype

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0000835 - decreased protein level

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

Protein features

PBO:0111755 - TPR repeat protein

Qualitative gene expression

PomGeneEx:0000018 - protein level increased

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Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0001001 - abnormal cell cycle arrest at mitotic G2/M phase transition during nitrogen starvation

References:

Genotypes:

FYPO:0000620 - abnormal cell cycle arrest in mitotic metaphase

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Genotypes:

FYPO:0000059 - abnormal mitotic cell cycle

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Genotypes:

FYPO:0003345 - abolished cell cycle arrest in mitotic G1 phase in response to nitrogen starvation

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Genotypes:

FYPO:0000659 - abolished DNA binding

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Genotypes:

FYPO:0000569 - abolished shmoo formation

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Genotypes:

FYPO:0002050 - branched elongated multinucleate aseptate vegetative cell

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Genotypes:

FYPO:0000229 - cut

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Genotypes:

FYPO:0003165 - cut with abnormal chromosome segregation

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0000532 - decreased mitotic cell cycle arrest in response to pheromone

References:

Genotypes:

FYPO:0000835 - decreased protein level

References:

Genotypes:

FYPO:0003681 - decreased protein level at centromere outer repeat heterochromatin

References:

Genotypes:

FYPO:0005102 - decreased protein level at silent mating-type cassette

References:

Genotypes:

FYPO:0005004 - decreased protein level in anaphase-promoting complex

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0006571 - increased cyclin-dependent protein kinase activity during cellular response to pheromone

References:

Genotypes:

FYPO:0001220 - increased protein level during cellular response to pheromone

References:

Genotypes:

FYPO:0001327 - increased protein level during vegetative growth

References:

Genotypes:

FYPO:0000314 - inviable after spore germination with elongated germ tube

References:

Genotypes:

FYPO:0003529 - inviable after spore germination, multiple cell divisions, cell cycle arrest in mitotic interphase, elongated cells

References:

Genotypes:

FYPO:0001042 - inviable after spore germination, single or double cell division

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Genotypes:

FYPO:0001494 - inviable elongated multiseptate vegetative cell

References:

Genotypes:

FYPO:0002252 - inviable swollen elongated mononucleate vegetative cell with normally localized septum

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0000895 - mitochondrial aggregation

References:

Genotypes:

FYPO:0007664 - mononucleate monoseptate vegetative cell with anucleate compartment

References:

Genotypes:

FYPO:0006339 - mononucleate vegetative cell with mislocalized nucleus

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Genotypes:

FYPO:0003570 - normal attachment of spindle microtubules to kinetochore

References:

Genotypes:

FYPO:0002048 - normal cell morphology during nitrogen starvation

References:

Genotypes:

FYPO:0001400 - normal interphase microtubules

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Genotypes:

FYPO:0001399 - normal mitotic spindle

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Genotypes:

FYPO:0001096 - normal RNA level during nitrogen starvation

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Genotypes:

FYPO:0001315 - normal vegetative cell morphology

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Genotypes:

FYPO:0001310 - normal viability in stationary phase

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Genotypes:

FYPO:0001984 - protein absent from cell during vegetative growth

References:

Genotypes:

FYPO:0000097 - sensitive to caffeine during vegetative growth

References:

Genotypes:

FYPO:0002080 - sensitive to TPCK

References:

Genotypes:

FYPO:0000732 - short bipolar mitotic spindle

References:

Genotypes:

FYPO:0000280 - sterile

References:

Genotypes:

FYPO:0002051 - swollen elongated multinucleate aseptate vegetative cell

References:

Genotypes:

FYPO:0003241 - unequal mitotic sister chromatid segregation

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF14559TPR_19PFAM
PF12895ANAPC3PFAM
PF13181TPR_8TPR_rptPFAM
PF00515TPR_1TPR_rptPFAM
PS50293TPR_REGIONPROSITE_PROFILES
PS50005TPRTPR_rptPROSITE_PROFILES
SM00028tpr_5TPR_rptSMART
G3DSA:1.25.40.10:FF:000018FUNFAM
SSF48452TPR-likeTPR-like_helical_dom_sfSUPERFAMILY
SSF81901HCP-likeSUPERFAMILY
G3DSA:1.25.40.10Tetratricopeptide repeat domainTPR-like_helical_dom_sfGENE3D
PTHR12558CELL DIVISION CYCLE 16,23,27PANTHER

Orthologs

References / Literature

PMID:11058086 - High dosage expression of a zinc finger protein, Grt1, suppresses a mutant of fission yeast slp1(+), a homolog of CDC20/p55CDC/Fizzy.
Yamada HY et al. J Cell Sci 2000 Nov;113 ( Pt 22):3989-99
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:30355493 - Expanded Interactome of the Intrinsically Disordered Protein Dss1.
Schenstrøm SM et al. Cell Rep 2018 Oct 23;25(4):862-870
PMID:31719112 - Checkpoint Regulation of Nuclear Tos4 Defines S Phase Arrest in Fission Yeast.
Kim SM et al. G3 (Bethesda) 2020 Jan 07;10(1):255-266
PMID:9614176 - Cyclin B proteolysis and the cyclin-dependent kinase inhibitor rum1p are required for pheromone-induced G1 arrest in fission yeast.
Stern B et al. Mol Biol Cell 1998 Jun;9(6):1309-21
PMID:12653962 - A brute force postgenome approach to identify temperature-sensitive mutations that negatively interact with separase and securin plasmids.
Matsumura T et al. Genes Cells 2003 Apr;8(4):341-55
PMID:16950791 - Role of Hcn1 and its phosphorylation in fission yeast anaphase-promoting complex/cyclosome function.
Yoon HJ et al. J Biol Chem 2006 Oct 27;281(43):32284-93
PMID:11033806 - [Overexpression of the apc10+ gene in the fission yeast Schizosaccharomyces pombe can suppress temperature sensitivity of the nuc2-663 mutant,but not its sterility].
Grishchuk EL et al. Mol Biol (Mosk) 2000;34(5):809-15
PMID:26771498 - A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
Vo TV et al. Cell 2016 Jan 14;164(1-2):310-323
GO_REF:0000111 - Gene Ontology annotations Inferred by Curator (IC) using at least one Inferred by Sequence Similarity (ISS) annotation to support the inference
PMID:18331722 - A mutual inhibition between APC/C and its substrate Mes1 required for meiotic progression in fission yeast.
Kimata Y et al. Dev Cell 2008 Mar;14(3):446-54
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:10725227 - A fission yeast general translation factor reveals links between protein synthesis and cell cycle controls.
Grallert B et al. J Cell Sci 2000 Apr;113 ( Pt 8):1447-58
PMID:8388878 - Cell cycle-dependent specific positioning and clustering of centromeres and telomeres in fission yeast.
Funabiki H et al. J Cell Biol 1993 Jun;121(5):961-76
PMID:2561424 - Gene products required for chromosome separation.
Yanagida M J Cell Sci Suppl 1989;12:213-29
PMID:2297790 - Snap helix with knob and hole: essential repeats in S. pombe nuclear protein nuc2+.
Hirano T et al. Cell 1990 Jan 26;60(2):319-28
PMID:7798319 - Bypassing anaphase by fission yeast cut9 mutation: requirement of cut9+ to initiate anaphase.
Samejima I et al. J Cell Biol 1994 Dec;127(6 Pt 1):1655-70
PMID:9755167 - The role of the destruction box and its neighbouring lysine residues in cyclin B for anaphase ubiquitin-dependent proteolysis in fission yeast: defining the D-box receptor.
Yamano H et al. EMBO J 1998 Oct 01;17(19):5670-8
PMID:10582241 - Control of metaphase-anaphase progression by proteolysis: cyclosome function regulated by the protein kinase A pathway, ubiquitination and localization.
Yanagida M et al. Philos Trans R Soc Lond B Biol Sci 1999 Sep 29;354(1389):1559-69; discussion 1569-70
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:7622618 - Fission yeast TPR-family protein nuc2 is required for G1-arrest upon nitrogen starvation and is an inhibitor of septum formation.
Kumada K et al. J Cell Sci 1995 Mar;108 ( Pt 3):895-905
PMID:18082611 - Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1.
Ohi MD et al. Mol Cell 2007 Dec 14;28(5):871-85
PMID:15060174 - Swm1/Apc13 is an evolutionarily conserved subunit of the anaphase-promoting complex stabilizing the association of Cdc16 and Cdc27.
Schwickart M et al. Mol Cell Biol 2004 Apr;24(8):3562-76
PMID:11533255 - Study of cyclin proteolysis in anaphase-promoting complex (APC) mutant cells reveals the requirement for APC function in the final steps of the fission yeast septation initiation network.
Chang L et al. Mol Cell Biol 2001 Oct;21(19):6681-94
PMID:19117951 - Interaction of APC/C-E3 ligase with Swi6/HP1 and Clr4/Suv39 in heterochromatin assembly in fission yeast.
Dubey RN et al. J Biol Chem 2009 Mar 13;284(11):7165-76
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:3409871 - Cold-sensitive and caffeine-supersensitive mutants of the Schizosaccharomyces pombe dis genes implicated in sister chromatid separation during mitosis.
Ohkura H et al. EMBO J 1988 May;7(5):1465-73
PMID:36108046 - Recovery from spindle checkpoint-mediated arrest requires a novel Dnt1-dependent APC/C activation mechanism.
Bai S et al. PLoS Genet 2022 Sep;18(9):e1010397
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:10526233 - Fission yeast APC/cyclosome subunits, Cut20/Apc4 and Cut23/Apc8, in regulating metaphase-anaphase progression and cellular stress responses.
Yamashita YM et al. Genes Cells 1999 Aug;4(8):445-63
PMID:18354085 - Diminishing HDACs by drugs or mutations promotes normal or abnormal sister chromatid separation by affecting APC/C and adherin.
Kimata Y et al. J Cell Sci 2008 Apr 01;121(Pt 7):1107-18
PMID:8918880 - 20S cyclosome complex formation and proteolytic activity inhibited by the cAMP/PKA pathway.
Yamashita YM et al. Nature 1996 Nov 21;384(6606):276-9
PMID:9649518 - A screen for genes involved in the anaphase proteolytic pathway identifies tsm1(+), a novel Schizosaccharomyces pombe gene important for microtubule integrity.
Grishchuk EL et al. Genetics 1998 Jul;149(3):1251-64
PMID:9264466 - Distinct subunit functions and cell cycle regulated phosphorylation of 20S APC/cyclosome required for anaphase in fission yeast.
Yamada H et al. J Cell Sci 1997 Aug;110 ( Pt 15):1793-804
PMID:10082519 - The schizosaccharomyces pombe dim1(+) gene interacts with the anaphase-promoting complex or cyclosome (APC/C) component lid1(+) and is required for APC/C function.
Berry LD et al. Mol Cell Biol 1999 Apr;19(4):2535-46
PMID:9755169 - Cdc18 transcription and proteolysis couple S phase to passage through mitosis.
Baum B et al. EMBO J 1998 Oct 01;17(19):5689-98
PMID:18556659 - The spindle checkpoint functions of Mad3 and Mad2 depend on a Mad3 KEN box-mediated interaction with Cdc20-anaphase-promoting complex (APC/C).
Sczaniecka M et al. J Biol Chem 2008 Aug 22;283(34):23039-47
PMID:12477395 - Proteomics analysis identifies new components of the fission and budding yeast anaphase-promoting complexes.
Yoon HJ et al. Curr Biol 2002 Dec 10;12(23):2048-54
PMID:33506191 - Escape from mitotic catastrophe by actin-dependent nuclear displacement in fission yeast.
Yukawa M et al. iScience 2021 Jan 22;24(1):102031
PMID:18225957 - Nuc2p, a subunit of the anaphase-promoting complex, inhibits septation initiation network following cytokinesis in fission yeast.
Chew TG et al. PLoS Genet 2008 Jan;4(1):e17
PMID:2404993 - In vitro reactivation of spindle elongation in fission yeast nuc2 mutant cells.
Masuda H et al. J Cell Biol 1990 Feb;110(2):417-25
PMID:11950879 - Control of localization of a spindle checkpoint protein, Mad2, in fission yeast.
Ikui AE et al. J Cell Sci 2002 Apr 15;115(Pt 8):1603-10
PMID:15161942 - The nucleolus is involved in mRNA export from the nucleus in fission yeast.
Ideue T et al. J Cell Sci 2004 Jun 15;117(Pt 14):2887-95
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:8978689 - Requirement for PP1 phosphatase and 20S cyclosome/APC for the onset of anaphase is lessened by the dosage increase of a novel gene sds23+.
Ishii K et al. EMBO J 1996 Dec 02;15(23):6629-40
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:9223296 - The Schizosaccharomyces pombe spindle checkpoint protein mad2p blocks anaphase and genetically interacts with the anaphase-promoting complex.
He X et al. Proc Natl Acad Sci U S A 1997 Jul 22;94(15):7965-70
PMID:9383050 - Mutational analysis of Cdc19p, a Schizosaccharomyces pombe MCM protein.
Forsburg SL et al. Genetics 1997 Nov;147(3):1025-41
PMID:9736616 - Apc10 and Ste9/Srw1, two regulators of the APC-cyclosome, as well as the CDK inhibitor Rum1 are required for G1 cell-cycle arrest in fission yeast.
Kominami K et al. EMBO J 1998 Sep 15;17(18):5388-99
PMID:3283148 - A temperature-sensitive mutation of the Schizosaccharomyces pombe gene nuc2+ that encodes a nuclear scaffold-like protein blocks spindle elongation in mitotic anaphase.
Hirano T et al. J Cell Biol 1988 Apr;106(4):1171-83
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83