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protein coding gene - cul1 (SPAC17G6.12) - cullin 1

Gene summary

Standard name
cul1
Systematic ID
SPAC17G6.12
Product
cullin 1
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
pcu1
UniProt ID
O13790
ORFeome ID
47/47B10
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 3612057..3614883 forward strand

Annotation

GO biological process

GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

References:

GO cellular component

GO:0005829 - cytosol

References:

GO:0043224 - nuclear SCF ubiquitin ligase complex

References:

GO:0019005 - SCF ubiquitin ligase complex

References:

GO molecular function

GO:0000822 - inositol hexakisphosphate binding

References:

GO:0005515 - protein binding

References:

GO:0160072 - ubiquitin ligase complex scaffold activity

References:

GO:0031625 - ubiquitin protein ligase binding

References:

Modification

MOD:01150 - neddylated lysine

References:

MOD:00046 - O-phospho-L-serine

References:

MOD:00048 - O4'-phospho-L-tyrosine

References:

Qualitative gene expression

PomGeneEx:0000018 - protein level increased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000059 - abnormal mitotic cell cycle

References:

Genotypes:

FYPO:0000252 - increased spontaneous diploidization

References:

Genotypes:

FYPO:0003529 - inviable after spore germination, multiple cell divisions, cell cycle arrest in mitotic interphase, elongated cells

References:

Genotypes:

FYPO:0002262 - inviable after spore germination, multiple cell divisions, elongated cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF26557Cullin_ABCullin-like_ABPFAM
PF10557Cullin_Nedd8Cullin_neddylation_domainPFAM
PF00888CullinCullin_NPFAM
PS01256CULLIN_1Cullin_CSPROSITE_PATTERNS
PS50069CULLIN_2Cullin_homologyPROSITE_PROFILES
SM00884Cullin_Nedd8_2Cullin_neddylation_domainSMART
SM00182cul_2Cullin_homologySMART
G3DSA:1.20.1310.10:FF:000012FUNFAM
G3DSA:1.20.1310.10:FF:000029FUNFAM
G3DSA:1.10.10.10:FF:000014FUNFAM
G3DSA:3.30.230.130:FF:000003FUNFAM
G3DSA:1.20.1310.10:FF:000001FUNFAM
G3DSA:1.20.1310.10:FF:000026FUNFAM
SSF46785"Winged helix" DNA-binding domainWH_DNA-bd_sfSUPERFAMILY
SSF74788Cullin repeat-likeCullin_repeat-like_dom_sfSUPERFAMILY
SSF75632Cullin homology domainCullin_homology_sfSUPERFAMILY
G3DSA:1.20.1310.10Cullin RepeatsGENE3D
G3DSA:3.30.230.130Cullin; Chain C, Domain 2GENE3D
G3DSA:1.10.10.10WH-like_DNA-bd_sfGENE3D
PTHR11932CULLINCullinPANTHER
CoilCoilCOILS

Orthologs

References / Literature

PMID:12167173 - Combinatorial diversity of fission yeast SCF ubiquitin ligases by homo- and heterooligomeric assemblies of the F-box proteins Pop1p and Pop2p.
Seibert V et al. BMC Biochem 2002 Aug 07;3:22
PMID:11337588 - Promotion of NEDD-CUL1 conjugate cleavage by COP9 signalosome.
Lyapina S et al. Science 2001 May 18;292(5520):1382-5
PMID:23496905 - Nedd8 processing enzymes in Schizosaccharomyces pombe.
O'Donoghue JE et al. BMC Biochem 2013 Mar 15;14:8
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:25165823 - Multiple regulation of Rad51-mediated homologous recombination by fission yeast Fbh1.
Tsutsui Y et al. PLoS Genet 2014 Aug;10(8):e1004542
PMID:19748355 - F-box-directed CRL complex assembly and regulation by the CSN and CAND1.
Schmidt MW et al. Mol Cell 2009 Sep 11;35(5):586-97
PMID:11854407 - Deletion mutants in COP9/signalosome subunits in fission yeast Schizosaccharomyces pombe display distinct phenotypes.
Mundt KE et al. Mol Biol Cell 2002 Feb;13(2):493-502
PMID:31626996 - Multiplexed proteome profiling of carbon source perturbations in two yeast species with SL-SP3-TMT.
Paulo JA et al. J Proteomics 2020 Jan 06;210:103531
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:30355493 - Expanded Interactome of the Intrinsically Disordered Protein Dss1.
Schenstrøm SM et al. Cell Rep 2018 Oct 23;25(4):862-870
PMID:32047038 - Basis for metabolite-dependent Cullin-RING ligase deneddylation by the COP9 signalosome.
Lin H et al. Proc Natl Acad Sci U S A 2020 Feb 25;117(8):4117-4124
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:11809834 - Fission yeast F-box protein Pof3 is required for genome integrity and telomere function.
Katayama S et al. Mol Biol Cell 2002 Jan;13(1):211-24
PMID:17016471 - Repression of ergosterol level during oxidative stress by fission yeast F-box protein Pof14 independently of SCF.
Tafforeau L et al. EMBO J 2006 Oct 04;25(19):4547-56
PMID:15769255 - Nep1, a Schizosaccharomyces pombe deneddylating enzyme.
Zhou L et al. Biochem J 2005 Jul 15;389(Pt 2):307-14
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:9990507 - Two F-box/WD-repeat proteins Pop1 and Pop2 form hetero- and homo-complexes together with cullin-1 in the fission yeast SCF (Skp1-Cullin-1-F-box) ubiquitin ligase.
Kominami K et al. Genes Cells 1998 Nov;3(11):721-35
PMID:15555586 - Mcs2 and a novel CAK subunit Pmh1 associate with Skp1 in fission yeast.
Bamps S et al. Biochem Biophys Res Commun 2004 Dec 24;325(4):1424-32
PMID:29149173 - Trade-off and flexibility in the dynamic regulation of the cullin-RING ubiquitin ligase repertoire.
Straube R et al. PLoS Comput Biol 2017 Nov;13(11):e1005869
PMID:38285941 - Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance.
Nathanailidou P et al. Proc Natl Acad Sci U S A 2024 Feb 06;121(6):e2315596121
PMID:15660136 - SCF(Pof1)-ubiquitin and its target Zip1 transcription factor mediate cadmium response in fission yeast.
Harrison C et al. EMBO J 2005 Feb 09;24(3):599-610
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:12183637 - Role of predicted metalloprotease motif of Jab1/Csn5 in cleavage of Nedd8 from Cul1.
Cope GA et al. Science 2002 Oct 18;298(5593):608-11
PMID:15147268 - Molecular interactions of fission yeast Skp1 and its role in the DNA damage checkpoint.
Lehmann A et al. Genes Cells 2004 May;9(5):367-82
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:10880460 - Covalent modifier NEDD8 is essential for SCF ubiquitin-ligase in fission yeast.
Osaka F et al. EMBO J 2000 Jul 03;19(13):3475-84
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:23535663 - CAND1 controls in vivo dynamics of the cullin 1-RING ubiquitin ligase repertoire.
Wu S et al. Nat Commun 2013;4:1642