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protein coding gene - arc5 (SPAC17G8.04c) - ARP2/3 actin-organizing complex subunit Arc5

Gene summary

Standard name
arc5
Systematic ID
SPAC17G8.04c
Product
ARP2/3 actin-organizing complex subunit Arc5
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
arc15
UniProt ID
Q10316
ORFeome ID
08/08E06
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 2348292..2349324 reverse strand

Annotation

Disease association

MONDO:0957920 - immunodeficiency 113 with autoimmunity and autoinflammation

References:

GO biological process

GO:0044396 - actin cortical patch organization

References:

GO:0090135 - actin filament branching

References:

GO:0034314 - Arp2/3 complex-mediated actin nucleation

References:

GO:0072583 - clathrin-dependent endocytosis

References:

GO:0030833 - regulation of actin filament polymerization

References:

GO cellular component

GO:0030479 - actin cortical patch

References:

GO:0005885 - Arp2/3 protein complex

References:

GO:0005829 - cytosol

References:

GO:0005768 - endosome

References:

GO:0043332 - mating projection tip

References:

GO:0005634 - nucleus

References:

GO molecular function

GO:0051015 - actin filament binding

References:

GO:0030674 - protein-macromolecule adaptor activity

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

Multi-locus phenotype

FYPO:0002150 - inviable spore population

References:

Genotypes:

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002207 - inviable swollen spore

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0007061 - normal Arp2/3 complex-mediated actin nucleation

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF04699P16-ArcARPC5PFAM
G3DSA:1.25.40.190:FF:000003FUNFAM
SSF69103Arp2/3 complex 16 kDa subunit ARPC5ARPC5_sfSUPERFAMILY
G3DSA:1.25.40.190ARPC5_sfGENE3D
PTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCARPC5PANTHER
PIRSF039096p16-ARCARPC5PIRSF

Orthologs

References / Literature

PMID:20517925 - GMF is an evolutionarily developed Adf/cofilin-super family protein involved in the Arp2/3 complex-mediated organization of the actin cytoskeleton.
Nakano K et al. Cytoskeleton (Hoboken) 2010 Jun;67(6):373-82
GO_REF:0000117 - Electronic Gene Ontology annotations created by ARBA machine learning models
PMID:25040903 - Eng2 is a component of a dynamic protein complex required for endocytic uptake in fission yeast.
Encinar del Dedo J et al. Traffic 2014 Oct;15(10):1122-42
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:12214236 - Actin dynamics in the contractile ring during cytokinesis in fission yeast.
Pelham RJ et al. Nature 2002 Sep 05;419(6902):82-6
GO_REF:0000002 - Comments
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:38448439 - Cryo-EM structures reveal how phosphate release from Arp3 weakens actin filament branches formed by Arp2/3 complex.
Chavali SS et al. Nat Commun 2024 Mar 06;15(1):2059
PMID:16087707 - Interactions of WASp, myosin-I, and verprolin with Arp2/3 complex during actin patch assembly in fission yeast.
Sirotkin V et al. J Cell Biol 2005 Aug 15;170(4):637-48
PMID:20587778 - Quantitative analysis of the mechanism of endocytic actin patch assembly and disassembly in fission yeast.
Sirotkin V et al. Mol Biol Cell 2010 Aug 15;21(16):2894-904
PMID:25825517 - A formin-nucleated actin aster concentrates cell wall hydrolases for cell fusion in fission yeast.
Dudin O et al. J Cell Biol 2015 Mar 30;208(7):897-911
PMID:31626996 - Multiplexed proteome profiling of carbon source perturbations in two yeast species with SL-SP3-TMT.
Paulo JA et al. J Proteomics 2020 Jan 06;210:103531
PMID:21620704 - Characterization of dip1p reveals a switch in Arp2/3-dependent actin assembly for fission yeast endocytosis.
Basu R et al. Curr Biol 2011 Jun 07;21(11):905-16
PMID:36442092 - Mechanism of actin filament branch formation by Arp2/3 complex revealed by a high-resolution cryo-EM structureof the branch junction.
Chou SZ et al. Proc Natl Acad Sci U S A 2022 Dec 06;119(49):e2206722119
PMID:26412298 - A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.
Beckley JR et al. Mol Cell Proteomics 2015 Dec;14(12):3132-41
PMID:32839613 - Cryo-EM reveals the transition of Arp2/3 complex from inactive to nucleation-competent state.
Shaaban M et al. Nat Struct Mol Biol 2020 Nov;27(11):1009-1016
PMID:19362000 - Cofilin dissociates Arp2/3 complex and branches from actin filaments.
Chan C et al. Curr Biol 2009 Apr 14;19(7):537-45
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:26771498 - A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
Vo TV et al. Cell 2016 Jan 14;164(1-2):310-323
PMID:16224022 - Counting cytokinesis proteins globally and locally in fission yeast.
Wu JQ et al. Science 2005 Oct 14;310(5746):310-4
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:18165685 - Pathway of actin filament branch formation by Arp2/3 complex.
Beltzner CC et al. J Biol Chem 2008 Mar 14;283(11):7135-44
PMID:18640983 - Structure and biochemical properties of fission yeast Arp2/3 complex lacking the Arp2 subunit.
Nolen BJ et al. J Biol Chem 2008 Sep 26;283(39):26490-8
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:30355493 - Expanded Interactome of the Intrinsically Disordered Protein Dss1.
Schenstrøm SM et al. Cell Rep 2018 Oct 23;25(4):862-870
PMID:41850284 - Arp2/3-dependent actin assembly shapes endosomes and promotes intracellular trafficking in fission yeast.
Melero A et al. Curr Biol 2026 Mar 17;
PMID:21642440 - Actin filament bundling by fimbrin is important for endocytosis, cytokinesis, and polarization in fission yeast.
Skau CT et al. J Biol Chem 2011 Jul 29;286(30):26964-77
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:22730331 - Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions.
Nie M et al. J Biol Chem 2012 Aug 24;287(35):29610-9