PomBase - protein coding gene - trp2 (SPAC19A8.15) - tryptophan synthase - The Schizosaccharomyces pombe genome database

Protein features

ID	Name	InterPro name	DB name
PF00291	PALP	TrpB-like_PALP	PFAM
PF00290	Trp_syntA	Trp_synthase_suA	PFAM
cd06446	Trp-synth_B	Trp_synth_beta	CDD
cd04724	Tryptophan_synthase_alpha	Trp_synthase_suA	CDD
PS00168	TRP_SYNTHASE_BETA	Trp_synth_b_CS	PROSITE_PATTERNS
PS00167	TRP_SYNTHASE_ALPHA	Trp_synthase_alpha_AS	PROSITE_PATTERNS
G3DSA:3.40.50.1100:FF:000001			FUNFAM
G3DSA:3.40.50.1100:FF:000004			FUNFAM
G3DSA:3.20.20.70:FF:000151			FUNFAM
SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	TrpB-like_PALP_sf	SUPERFAMILY
SSF51366	Ribulose-phoshate binding barrel	RibuloseP-bd_barrel	SUPERFAMILY
G3DSA:3.40.50.1100		TrpB-like_PALP_sf	GENE3D
G3DSA:3.20.20.70	Aldolase class I	Aldolase_TIM	GENE3D
PTHR48077	TRYPTOPHAN SYNTHASE-RELATED	Trp_synth_beta/beta-like	PANTHER
MF_00133	Trp_synth_beta	Trp_synth_beta/beta-like	HAMAP
MF_00131	Trp_synth_alpha	Trp_synthase_suA	HAMAP
TIGR00263	trpB	Trp_synth_beta	NCBIFAM
TIGR00262	trpA	Trp_synthase_suA	NCBIFAM

References / Literature

PMID:21511999 - Comparative functional genomics of the fission yeasts.: Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.: Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:36408920 - UniProt: the Universal Protein Knowledgebase in 2023.: UniProt Consortium Nucleic Acids Res 2023 Jan 06;51(D1):D523-D531
PMID:37615341 - Schizosaccharomyces pombe Rtf2 is important for replication fork barrier activity of RTS1 via splicing of Rtf1 .: Budden AM et al. Elife 2023 Aug 24;12
PMID:22540037 - Predicting the fission yeast protein interaction network.: Pancaldi V et al. G3 (Bethesda) 2012 Apr;2(4):453-67
PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.: Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.: Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.: Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:39705284 - Proteomic and phosphoproteomic analyses reveal that TORC1 is reactivated by pheromone signaling during sexual reproduction in fission yeast.: Bérard M et al. PLoS Biol 2024 Dec 20;22(12):e3002963
PMID:36478272 - Translation-complex profiling of fission yeast cells reveals dynamic rearrangements of scanning ribosomal subunits upon nutritional stress.: Duncan CDS et al. Nucleic Acids Res 2022 Dec 09;50(22):13011-13025
PMID:29432178 - General amino acid control in fission yeast is regulated by a nonconserved transcription factor, with functions analogous to Gcn4/Atf4.: Duncan CDS et al. Proc Natl Acad Sci U S A 2018 Feb 20;115(8):E1829-E1838
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.: Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.: Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:27298342 - Identification of S-phase DNA damage-response targets in fission yeast reveals conservation of damage-response networks.: Willis NA et al. Proc Natl Acad Sci U S A 2016 Jun 28;113(26):E3676-85
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).: Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:34496258 - Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription.: Heo DH et al. Cell Rep 2021 Sep 07;36(10):109671
PMID:22119525 - SIN-inhibitory phosphatase complex promotes Cdc11p dephosphorylation and propagates SIN asymmetry in fission yeast.: Singh NS et al. Curr Biol 2011 Dec 06;21(23):1968-78
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.: Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:19547744 - Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species.: Beltrao P et al. PLoS Biol 2009 Jun 16;7(6):e1000134
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:27984744 - Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs.: Joh RI et al. Mol Cell 2016 Dec 15;64(6):1088-1101
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.: Lee J et al. Nat Commun 2017 Feb 20;8:14527

protein coding gene - trp2 (SPAC19A8.15) - tryptophan synthase

Gene summary

Annotation

GO biological process

GO:0000162 - L-tryptophan biosynthetic process

GO cellular component

GO:0005829 - cytosol

GO molecular function

GO:0004834 - tryptophan synthase activity

Modification

MOD:00128 - N6-pyridoxal phosphate-L-lysine

MOD:00046 - O-phospho-L-serine

MOD:00696 - phosphorylated residue

MOD:01148 - ubiquitinylated lysine

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

PomGeneEx:0000012 - RNA level decreased

PomGeneEx:0000011 - RNA level increased

Quantitative gene expression

PBO:0006310 - protein level

PBO:0011963 - RNA level

Single locus phenotype

FYPO:0002420 - inviable after spore germination, single cell division, abnormal cell shape

FYPO:0002151 - inviable spore

FYPO:0002061 - inviable vegetative cell population

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

Protein features

Orthologs

References / Literature