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protein coding gene - imp3 (SPAC19D5.05c) - U3 snoRNP-associated protein Imp3

Gene summary

Standard name
imp3
Systematic ID
SPAC19D5.05c
Product
U3 snoRNP-associated protein Imp3
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O13835
ORFeome ID
07/07C11
Characterisation status
biological role inferred
Feature type
mRNA gene
Genomic location
chromosome I: 5218789..5219592 reverse strand

Annotation

GO biological process

GO:0042274 - ribosomal small subunit biogenesis

References:

GO:0006364 - rRNA processing

References:

GO cellular component

GO:0034457 - Mpp10 complex

References:

GO:0005730 - nucleolus

References:

GO:0005634 - nucleus

References:

GO:0032040 - small-subunit processome

References:

GO molecular function

GO:0019843 - rRNA binding

References:

GO:0030515 - snoRNA binding

References:

Qualitative gene expression

PomGeneEx:0000012 - RNA level decreased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000311 - inviable after spore germination with normal, unseptated germ tube morphology

References:

Genotypes:

FYPO:0002151 - inviable spore

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF01479S4S4_RNA-bdPFAM
PF00163Ribosomal_S4Ribosomal_uS4_NPFAM
cd00165S4CDD
PS50889S4PROSITE_PROFILES
SM00363s4_6S4_RNA-bdSMART
SM01390Ribosomal_S4_2Ribosomal_uS4_NSMART
G3DSA:3.10.290.10:FF:000006FUNFAM
SSF55174Alpha-L RNA-binding motifSUPERFAMILY
G3DSA:3.10.290.10S4_RNA-bd_sfGENE3D
PTHR1183130S 40S RIBOSOMAL PROTEINRibosomal_uS4PANTHER

Orthologs

References / Literature

PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:33313903 - Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
Rubio A et al. Nucleic Acids Res 2021 Jan 11;49(1):383-399
PMID:26771498 - A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
Vo TV et al. Cell 2016 Jan 14;164(1-2):310-323
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:30321377 - Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome.
Telekawa C et al. Nucleic Acids Res 2018 Nov 30;46(21):11169-11183
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:16537923 - Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.
Todd BL et al. Mol Cell Biol 2006 Apr;26(7):2817-31
PMID:25375137 - Systematic analysis of the role of RNA-binding proteins in the regulation of RNA stability.
Hasan A et al. PLoS Genet 2014 Nov;10(11):e1004684
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
GO_REF:0000002 - Comments
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:24713849 - Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex.
Egan ED et al. RNA 2014 Jun;20(6):867-81