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protein coding gene - rad15 (SPAC1D4.12) - transcription factor TFIIH complex DNA helicase (human ERCC2) subunit Rad15

Gene summary

Standard name
rad15
Systematic ID
SPAC1D4.12
Product
transcription factor TFIIH complex DNA helicase (human ERCC2) subunit Rad15
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
rhp3, rad5
UniProt ID
P26659
ORFeome ID
38/38C06
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 664348..667647 forward strand

Annotation

Complementation

PBO:0012224 - functionally complemented by S. cerevisiae RAD3

References:

PBO:0012223 - functionally complements S. cerevisiae RAD3

References:

Disease association

MONDO:0012553 - cerebrooculofacioskeletal syndrome 2

References:

MONDO:0002470 - photosensitive trichothiodystrophy

References:

MONDO:0011125 - trichothiodystrophy 1, photosensitive

References:

MONDO:0010212 - xeroderma pigmentosum group D

References:

GO biological process

GO:0006289 - nucleotide-excision repair

References:

GO:0006367 - transcription initiation at RNA polymerase II promoter

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GO cellular component

GO:0005829 - cytosol

References:

GO:0000112 - nucleotide-excision repair factor 3 complex

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GO:0005634 - nucleus

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GO:0000439 - transcription factor TFIIH core complex

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GO:0005675 - transcription factor TFIIH holo complex

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GO molecular function

GO:0043139 - 5'-3' DNA helicase activity

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GO:0005524 - ATP binding

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GO:0016887 - ATP hydrolysis activity

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GO:0003677 - DNA binding

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GO:0016251 - RNA polymerase II general transcription initiation factor activity

References:

Protein features

PBO:0111747 - DEAD/DEAH box helicase

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0004030 - decreased 5' deoxyribonuclease (pyrimidine dimer) activity

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Genotypes:

FYPO:0000708 - decreased mating efficiency

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Genotypes:

FYPO:0000581 - decreased spore germination frequency

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Genotypes:

FYPO:0000473 - increased mitotic recombination

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Genotypes:

FYPO:0000315 - inviable after spore germination, without cell division, with elongated, septated germ tube

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0002169 - normal growth during cellular response to gamma radiation

References:

Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

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Genotypes:

FYPO:0004404 - normal growth on JM216

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Genotypes:

FYPO:0004406 - normal growth on JM335

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Genotypes:

FYPO:0004411 - normal growth on oxaliplatin

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Genotypes:

FYPO:0004410 - normal growth on tetraplatin

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Genotypes:

FYPO:0004408 - normal growth on triplatin tetranitrate

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Genotypes:

FYPO:0000102 - sensitive to cisplatin

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Genotypes:

FYPO:0000267 - sensitive to ionizing radiation during vegetative growth

References:

Genotypes:

FYPO:0004402 - sensitive to JM216

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Genotypes:

FYPO:0004405 - sensitive to JM335

References:

Genotypes:

FYPO:0002345 - sensitive to oxaliplatin

References:

Genotypes:

FYPO:0004409 - sensitive to tetraplatin

References:

Genotypes:

FYPO:0004407 - sensitive to triplatin tetranitrate

References:

Genotypes:

FYPO:0000268 - sensitive to UV during vegetative growth

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011072 - conserved in archaea

References:

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF06733DEAD_2RAD3-like_helicase_DEADPfam
PF06777HBBHBBPfam
PF13307Helicase_C_2ATP-dep_Helicase_CPfam
cd18788SF2_C_XPDCDD
PS51193HELICASE_ATP_BIND_2Helic_SF1/SF2_ATP-bd_DinG/Rad3PROSITE profiles
SM00488DEXDc2Helicase-like_DEXD_c2SMART
SM00491HELICc2ATP-dep_Helicase_CSMART
PR00852XRODRMPGMNTDRAD3/XPDPRINTS
G3DSA:3.40.50.300:FF:000128CATH-FunFam
G3DSA:3.40.50.300:FF:000135CATH-FunFam
G3DSA:3.40.50.300:FF:000381CATH-FunFam
G3DSA:3.40.50.300P-loop_NTPaseCATH-Gene3D
SSF52540P-loop_NTPaseSUPERFAMILY
PTHR11472DinG/Rad3-likePANTHER
TIGR00604rad3Rad3/Chl1-likeNCBIFAM
CoilCOILS

Orthologs

References / Literature

PMID:7623848 - An alternative eukaryotic DNA excision repair pathway.
Freyer GA et al. Mol Cell Biol 1995 Aug;15(8):4572-7
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:8303296 - RNA polymerase II initiation factor interactions and transcription start site selection.
Li Y et al. Science 1994 Feb 11;263(5148):805-7
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:1319571 - Cloning and characterisation of the S. pombe rad15 gene, a homologue to the S. cerevisiae RAD3 and human ERCC2 genes.
Murray JM et al. Nucleic Acids Res 1992 Jun 11;20(11):2673-8
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:22313747 - A double mutant between fission yeast telomerase and RecQ helicase is sensitive to thiabendazole, an anti-microtubule drug.
Ukimori S et al. Biosci Biotechnol Biochem 2012;76(2):264-9
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:9092625 - Characterisation of Schizosaccharomyces pombe rad31, a UBA-related gene required for DNA damage tolerance.
Shayeghi M et al. Nucleic Acids Res 1997 Mar 15;25(6):1162-9
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:166019 - Genetic control of radiation sensitivity in Schizosaccharomyces pombe.
Nasim A et al. Genetics 1975 Apr;79(4):573-82
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:40015273 - A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin.
Skribbe M et al. Mol Cell 2025 Feb 19;
InterPro:IPR013020 - Unknown title
PMID:9487130 - Regulation of telomere length by checkpoint genes in Schizosaccharomyces pombe.
Dahlen M et al. Mol Biol Cell 1998 Mar;9(3):611-21
PB_REF:0000003 - Disease Association Curation
PMID:9658208 - Sensitivity to cisplatin and platinum-containing compounds of Schizosaccharomyces pombe rad mutants.
Perego P et al. Mol Pharmacol 1998 Jul;54(1):213-9
PMID:7254221 - Spontaneous and UV-induced recombination in radiation-sensitive mutants of Schizosaccharomyces pombe.
Grossenbacher-Grunder AM et al. Mutat Res 1981 Mar;81(1):37-48
PMID:1534406 - The Schizosaccharomyces pombe rhp3+ gene required for DNA repair and cell viability is functionally interchangeable with the RAD3 gene of Saccharomyces cerevisiae.
Reynolds PR et al. Nucleic Acids Res 1992 May 11;20(9):2327-34
GO_REF:0000002 - Comments
GO_REF:0000024 - Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity.