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protein coding gene - cdc1 (SPAC27E2.05) - DNA polymerase delta small subunit Cdc1

Gene summary

Standard name
cdc1
Systematic ID
SPAC27E2.05
Product
DNA polymerase delta small subunit Cdc1
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
mis1
UniProt ID
P87324
ORFeome ID
23/23B11
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 4015050..4016557 forward strand

Annotation

Comment

PBO:0017749 - DNA polymerase delta 3'-5' exonuclease-to-polymerase ratio is about 1:30

References:

PBO:0017750 - DNA polymerase delta exists predominantly as a dimer of the heterotetramer (Pol3, Cdc1, Cdc27, and Cdm1)

References:

PBO:0017748 - DNA polymerase delta nucleotide misincorporation rate 4.5-5.3x10^-4

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Complementation

PBO:0012564 - is not functionally complemented by S. cerevisiae Hys2

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GO biological process

GO:1902983 - DNA strand elongation involved in mitotic DNA replication

References:

GO:1904161 - DNA synthesis involved in UV-damage excision repair

References:

GO:1903459 - mitotic DNA replication lagging strand elongation

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GO:1903460 - mitotic DNA replication leading strand elongation

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GO:0033260 - nuclear DNA replication

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GO cellular component

GO:0005829 - cytosol

References:

GO:0043625 - delta DNA polymerase complex

References:

GO:0005634 - nucleus

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GO molecular function

GO:0003677 - DNA binding

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GO:0034061 - DNA polymerase activity

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Modification

MOD:00047 - O-phospho-L-threonine

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Multi-locus phenotype

FYPO:0003449 - abnormal cell cycle arrest at mitotic G1/S phase transition

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Genotypes:

FYPO:0000400 - abnormal cell cycle arrest at mitotic G2/M phase transition

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Genotypes:

FYPO:0000229 - cut

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Genotypes:

FYPO:0003165 - cut with abnormal chromosome segregation

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0000839 - inviable elongated mononucleate aseptate cell

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Genotypes:

FYPO:0001490 - inviable elongated vegetative cell

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0001387 - loss of viability at high temperature

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Genotypes:

FYPO:0000256 - mutator

References:

Genotypes:

FYPO:0001532 - normal duration of mitotic S phase

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Genotypes:

FYPO:0004629 - normal mitotic DNA replication

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Genotypes:

FYPO:0001428 - normal negative regulation of mitotic DNA replication initiation

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Genotypes:

FYPO:0001357 - normal vegetative cell population growth

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Genotypes:

FYPO:0002516 - premature mitotic G2/M phase transition

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

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Genotypes:

FYPO:0006822 - viable small vegetative cell with normal cell growth rate

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Genotypes:

FYPO:0002060 - viable vegetative cell population

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Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

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Genotypes:

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

PomGeneEx:0000016 - RNA level constant

References:

PomGeneEx:0000014 - RNA present

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Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000400 - abnormal cell cycle arrest at mitotic G2/M phase transition

References:

Genotypes:

FYPO:0000059 - abnormal mitotic cell cycle

References:

Genotypes:

FYPO:0000625 - abnormal premeiotic DNA replication

References:

Genotypes:

FYPO:0000474 - abolished meiosis

References:

Genotypes:

FYPO:0000705 - abolished protein-protein interaction

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Genotypes:

FYPO:0001645 - decreased protein-protein interaction

References:

Genotypes:

FYPO:0001982 - decreased rate of DNA replication during vegetative growth

References:

Genotypes:

FYPO:0002019 - elongated telomeres during vegetative growth

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0000786 - increased plasmid loss

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Genotypes:

FYPO:0001571 - increased protein-protein interaction

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Genotypes:

FYPO:0000316 - inviable after spore germination

References:

Genotypes:

FYPO:0000314 - inviable after spore germination with elongated germ tube

References:

Genotypes:

FYPO:0003529 - inviable after spore germination, multiple cell divisions, cell cycle arrest in mitotic interphase, elongated cells

References:

Genotypes:

FYPO:0000839 - inviable elongated mononucleate aseptate cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0000256 - mutator

References:

Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

References:

Genotypes:

FYPO:0000703 - normal protein-protein interaction

References:

Genotypes:

FYPO:0000590 - normal sporulation

References:

Genotypes:

FYPO:0000842 - sensitive to ethanol during vegetative growth

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Subunit composition

PBO:0017751 - heteromeric(4)

References:

Taxonomic conservation

PBO:0011072 - conserved in archaea

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF18018DNA_pol_D_NDNA_pol_D_NPFAM
PF04042DNA_pol_E_BDNA_pol_a/d/e_bsuPFAM
cd07387MPP_PolD2_CPolD2_CCDD
G3DSA:2.40.50.430:FF:000002FUNFAM
G3DSA:3.60.21.50:FF:000002FUNFAM
G3DSA:2.40.50.430GENE3D
G3DSA:3.60.21.50GENE3D
PTHR10416DNA POLYMERASE DELTA SUBUNIT 2DNA_pol_delta/II_ssuPANTHER

Orthologs

References / Literature

PMID:9326594 - DNA polymerase delta isolated from Schizosaccharomyces pombe contains five subunits.
Zuo S et al. Proc Natl Acad Sci U S A 1997 Oct 14;94(21):11244-9
PMID:10704216 - In vitro reconstitution of the Schizosaccharomyces pombe alternative excision repair pathway.
Alleva JL et al. Biochemistry 2000 Mar 14;39(10):2659-66
PMID:9383050 - Mutational analysis of Cdc19p, a Schizosaccharomyces pombe MCM protein.
Forsburg SL et al. Genetics 1997 Nov;147(3):1025-41
PMID:15173383 - The C-terminal zinc finger of the catalytic subunit of DNA polymerase delta is responsible for direct interaction with the B-subunit.
Sanchez Garcia J et al. Nucleic Acids Res 2004;32(10):3005-16
PMID:8292390 - A novel mutation involved in the mitotic checkpoint in the fission yeast Schizosaccharomyces pombe.
Ishiguro J et al. Jpn J Genet 1993 Aug;68(4):265-76
PMID:21389117 - Mes1 controls the meiosis I to meiosis II transition by distinctly regulating the anaphase-promoting complex/cyclosome coactivators Fzr1/Mfr1 and Slp1 in fission yeast.
Kimata Y et al. Mol Biol Cell 2011 May;22(9):1486-94
PMID:17112379 - The CENP-B homolog, Abp1, interacts with the initiation protein Cdc23 (MCM10) and is required for efficient DNA replication in fission yeast.
Locovei AM et al. Cell Div 2006 Nov 17;1:27
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:9799358 - Cdm1, the smallest subunit of DNA polymerase d in the fission yeast Schizosaccharomyces pombe, is non-essential for growth and division.
Reynolds N et al. Curr Genet 1998 Oct;34(4):250-8
PMID:23211746 - Initiation of DNA damage responses through XPG-related nucleases.
Kuntz K et al. EMBO J 2013 Jan 23;32(2):290-302
GO_REF:0000116 - Automatic Gene Ontology annotation based on Rhea mapping.
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:10671561 - Structure and activity associated with multiple forms of Schizosaccharomyces pombe DNA polymerase delta.
Zuo S et al. J Biol Chem 2000 Feb 18;275(7):5153-62
PMID:16453724 - Isolation and characterization of Schizosaccharomyces pombe cutmutants that block nuclear division but not cytokinesis.
Hirano T et al. EMBO J 1986 Nov;5(11):2973-9
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:10888871 - Mitotic replication initiation proteins are not required for pre-meiotic S phase.
Forsburg SL et al. Nat Genet 2000 Jul;25(3):263-8
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:7845361 - Ethanol-hypersensitive and ethanol-dependent cdc- mutants in Schizosaccharomyces pombe.
Jimenez J et al. Mol Gen Genet 1994 Oct 17;245(1):86-95
PMID:10683155 - A novel mutant allele of the chromatin-bound fission yeast checkpoint protein Rad17 separates the DNA structure checkpoints.
Griffiths D et al. J Cell Sci 2000 Mar;113 ( Pt 6):1075-88
PMID:33796794 - Increased expression of Polδ does not alter the canonical replication program in vivo .
Zach R et al. Wellcome Open Res 2021;6:44
PMID:10880469 - Genetic analyses of Schizosaccharomyces pombe dna2(+) reveal that dna2 plays an essential role in Okazaki fragment metabolism.
Kang HY et al. Genetics 2000 Jul;155(3):1055-67
PMID:19686603 - Functional mapping of the fission yeast DNA polymerase delta B-subunit Cdc1 by site-directed and random pentapeptide insertion mutagenesis.
Sanchez Garcia J et al. BMC Mol Biol 2009 Aug 17;10:82
PMID:10748208 - Fidelity of eucaryotic DNA polymerase delta holoenzyme from Schizosaccharomyces pombe.
Chen X et al. J Biol Chem 2000 Jun 09;275(23):17677-82
PMID:16040599 - Contrasting effects of Elg1-RFC and Ctf18-RFC inactivation in the absence of fully functional RFC in fission yeast.
Kim J et al. Nucleic Acids Res 2005;33(13):4078-89
PMID:24462781 - RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe.
Smialowska A et al. Biochem Biophys Res Commun 2014 Feb 07;444(2):254-9
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:7865880 - Fission yeast minichromosome loss mutants mis cause lethal aneuploidy and replication abnormality.
Takahashi K et al. Mol Biol Cell 1994 Oct;5(10):1145-58
PMID:10757807 - Cid1, a fission yeast protein required for S-M checkpoint control when DNA polymerase delta or epsilon is inactivated.
Wang SW et al. Mol Cell Biol 2000 May;20(9):3234-44
PMID:12697806 - Replication proteins influence the maintenance of telomere length and telomerase protein stability.
Dahlén M et al. Mol Cell Biol 2003 May;23(9):3031-42
PMID:10698951 - Essential interaction between the fission yeast DNA polymerase delta subunit Cdc27 and Pcn1 (PCNA) mediated through a C-terminal p21(Cip1)-like PCNA binding motif.
Reynolds N et al. EMBO J 2000 Mar 01;19(5):1108-18
PMID:15579205 - Mapping and mutation of the conserved DNA polymerase interaction motif (DPIM) located in the C-terminal domain of fission yeast DNA polymerase delta subunit Cdc27.
Gray FC et al. BMC Mol Biol 2004 Dec 03;5(1):21
PMID:1934126 - Common genes and pathways in the regulation of the mitotic and meiotic cell cycles of Schizosaccharomyces pombe.
Grallert B et al. Curr Genet 1991 Aug;20(3):199-204
PMID:8887553 - The fission yeast Cdc1 protein, a homologue of the small subunit of DNA polymerase delta, binds to Pol3 and Cdc27.
MacNeill SA et al. EMBO J 1996 Sep 02;15(17):4613-28
PMID:958201 - Genetic control of the cell division cycle in the fission yeast Schizosaccharomyces pombe.
Nurse P et al. Mol Gen Genet 1976 Jul 23;146(2):167-78
PMID:12124382 - The influence of the Cdc27 subunit on the properties of the Schizosaccharomyces pombe DNA polymerase delta.
Bermudez VP et al. J Biol Chem 2002 Sep 27;277(39):36853-62
PMID:6828164 - Control of timing of cell cycle events in fission yeast by the wee 1+ gene.
Fantes PA Nature 1983 Mar 10;302(5904):153-5
PMID:9891047 - Mutator phenotype induced by aberrant replication.
Liu VF et al. Mol Cell Biol 1999 Feb;19(2):1126-35
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
GO_REF:0000051 - S. pombe keyword mapping
GO_REF:0000002 - Comments
PMID:10388806 - Rereplication phenomenon in fission yeast requires MCM proteins and other S phase genes.
Snaith HA et al. Genetics 1999 Jul;152(3):839-51