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protein coding gene - Tf2-3 (SPAC2E1P3.03c) - retrotransposable element/transposon Tf2-type

Gene summary

Standard name
Tf2-3
Systematic ID
SPAC2E1P3.03c
Product
retrotransposable element/transposon Tf2-type
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
P0CT36
Characterisation status
transposon
Feature type
mRNA gene
Genomic location
chromosome I: 2927204..2931205 reverse strand

Annotation

GO biological process

GO:0015074 - DNA integration

References:

GO molecular function

GO:0004190 - aspartic-type endopeptidase activity

References:

GO:0003964 - RNA-directed DNA polymerase activity

References:

Protein features

PBO:0111826 - Tf2-type transposon

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0011963 - RNA level

References:

Protein features

IDNameInterPro nameDB name
PF00665rveIntegrase_cat-corePFAM
PF17919RT_RNaseH_2RT_RNaseH_2PFAM
PF17921Integrase_H2C2Integrase_H2C2PFAM
PF24614Tf2-1_CTf2-1-like_CPFAM
PF00078RVT_1RT_domPFAM
PF12382Peptidase_A2_2Tf2-1-like_domPFAM
PF24626SH3_Tf2-1SH3_Tf2-1PFAM
cd00303retropepsin_likeCDD
cd09274RNase_HI_RT_Ty3CDD
cd01647RT_LTRCDD
PS00141ASP_PROTEASEAspartic_peptidase_ASPROSITE_PATTERNS
PS50878RT_POLRT_domPROSITE_PROFILES
PS50994INTEGRASEIntegrase_cat-corePROSITE_PROFILES
G3DSA:3.10.20.370:FF:000003FUNFAM
G3DSA:3.30.70.270:FF:000045FUNFAM
SSF53098Ribonuclease H-likeRNaseH-like_sfSUPERFAMILY
SSF56672DNA/RNA polymerasesDNA/RNA_pol_sfSUPERFAMILY
SSF50630Acid proteasesPeptidase_aspartic_dom_sfSUPERFAMILY
G3DSA:3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1GENE3D
G3DSA:2.40.70.10Acid ProteasesPeptidase_aspartic_dom_sfGENE3D
G3DSA:3.30.420.10RNaseH_sfGENE3D
G3DSA:3.10.20.370GENE3D
G3DSA:1.10.340.70GENE3D
G3DSA:3.30.70.270Rev_trsase/Diguanyl_cyclaseGENE3D
PTHR37984PROTEIN CBG26694Retrovirus_Pol_polyproteinPANTHER
CoilCoilCOILS
mobidb-lite-Disorderdisorder_predictionMOBIDB-Disorder
mobidb-lite-Polardisorder_predictionMOBIDB-Polar

References / Literature

PMID:29432178 - General amino acid control in fission yeast is regulated by a nonconserved transcription factor, with functions analogous to Gcn4/Atf4.
Duncan CDS et al. Proc Natl Acad Sci U S A 2018 Feb 20;115(8):E1829-E1838
PMID:12952871 - Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe.
Bowen NJ et al. Genome Res 2003 Sep;13(9):1984-97
GO_REF:0000003 - Gene Ontology annotation based on Enzyme Commission mapping
GO_REF:0000002 - Comments
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:33313903 - Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
Rubio A et al. Nucleic Acids Res 2021 Jan 11;49(1):383-399