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protein coding gene - tsn1 (SPAC30.03c) - translin

Gene summary

Standard name
tsn1
Systematic ID
SPAC30.03c
Product
translin
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
tsn, mug90
UniProt ID
Q9P7V3
ORFeome ID
43/43E06
Characterisation status
biological role inferred
Feature type
mRNA gene
Genomic location
chromosome I: 4394376..4395629 reverse strand

Annotation

GO biological process

GO:0006396 - RNA processing

References:

GO:0000724 - double-strand break repair via homologous recombination

References:

GO:0006303 - double-strand break repair via nonhomologous end joining

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GO cellular component

GO:0005829 - cytosol

References:

GO:0005634 - nucleus

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GO molecular function

GO:1990605 - GU repeat RNA binding

References:

GO:0035939 - microsatellite binding

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GO:0005515 - protein binding

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GO:0003723 - RNA binding

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GO:0004540 - RNA nuclease activity

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GO:0043047 - single-stranded telomeric DNA binding

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Multi-locus phenotype

FYPO:0001324 - decreased protein level during vegetative growth

References:

Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

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Genotypes:

FYPO:0005602 - normal subtelomeric heterochromatin RNA level

References:

Genotypes:

FYPO:0002687 - normal telomere length during vegetative growth

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Genotypes:

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0000151 - abnormal meiotic chromosome segregation

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Genotypes:

FYPO:0000121 - abnormal sporulation

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Genotypes:

FYPO:0000705 - abolished protein-protein interaction

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Genotypes:

FYPO:0004291 - decreased GT microsatellite DNA binding

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Genotypes:

FYPO:0004288 - decreased GT repeat stability

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Genotypes:

FYPO:0004289 - decreased GU repeat RNA binding

References:

Genotypes:

FYPO:0001324 - decreased protein level during vegetative growth

References:

Genotypes:

FYPO:0001645 - decreased protein-protein interaction

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Genotypes:

FYPO:0004806 - incomplete cell wall disassembly at cell fusion site

References:

Genotypes:

FYPO:0005917 - increased subtelomeric heterochromatin RNA level

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Genotypes:

FYPO:0006518 - loss of viability in G0

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Genotypes:

FYPO:0002567 - normal centromeric outer repeat transcript level

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Genotypes:

FYPO:0004286 - normal double-strand break repair via nonhomologous end joining

References:

Genotypes:

FYPO:0007553 - normal G1 to G0 transition

References:

Genotypes:

FYPO:0001037 - normal growth during cellular response to salt stress

References:

Genotypes:

FYPO:0000969 - normal growth during cellular response to UV

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Genotypes:

FYPO:0001690 - normal growth on camptothecin

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Genotypes:

FYPO:0001023 - normal growth on cisplatin

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Genotypes:

FYPO:0000963 - normal growth on hydroxyurea

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Genotypes:

FYPO:0000957 - normal growth on methyl methanesulfonate

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Genotypes:

FYPO:0004285 - normal growth on mitomycin C

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Genotypes:

FYPO:0003183 - normal growth on phleomycin

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Genotypes:

FYPO:0000961 - normal growth on sorbitol

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Genotypes:

FYPO:0000964 - normal growth on thiabendazole

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Genotypes:

FYPO:0003891 - normal intragenic meiotic recombination

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Genotypes:

FYPO:0000478 - normal meiosis

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Genotypes:

FYPO:0000503 - normal mitotic recombination

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Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

References:

Genotypes:

FYPO:0000943 - normal spore morphology

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Genotypes:

FYPO:0005602 - normal subtelomeric heterochromatin RNA level

References:

Genotypes:

FYPO:0002687 - normal telomere length during vegetative growth

References:

Genotypes:

FYPO:0001420 - normal vegetative cell population growth rate

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Genotypes:

FYPO:0000763 - resistance to cadmium

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Genotypes:

FYPO:0000764 - resistance to cycloheximide

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Genotypes:

FYPO:0009035 - resistance to formamide

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Genotypes:

FYPO:0009043 - resistance to potassium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0003383 - resistance to tert-butyl hydroperoxide

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Genotypes:

FYPO:0001501 - sensitive to brefeldin A

References:

Genotypes:

FYPO:0006931 - sensitive to butylated hydroxytoluene

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Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Subunit composition

PBO:0015239 - homomeric(8)

References:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0000055 - no apparent S. cerevisiae ortholog

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF01997TranslinTranslin_famPFAM
cd14819TranslinTranslinCDD
G3DSA:1.20.58.190:FF:000001FUNFAM
SSF74784TranslinTranslin_sfSUPERFAMILY
G3DSA:1.20.58.190Translin; domain 1Translin_NGENE3D
G3DSA:1.20.58.200Translin; domain 2Translin_CGENE3D
PTHR10741TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN XTranslin_famPANTHER
CoilCoilCOILS

Orthologs

References / Literature

PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:12618370 - Schizosaccharomyces pombe essential genes: a pilot study.
Decottignies A et al. Genome Res 2003 Mar;13(3):399-406
PMID:28410370 - A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion.
Dudin O et al. PLoS Genet 2017 Apr;13(4):e1006721
PMID:30647105 - Comparative Genomic Screen in Two Yeasts Reveals Conserved Pathways in the Response Network to Phenol Stress.
Alhoch B et al. G3 (Bethesda) 2019 Mar 07;9(3):639-650
PMID:24382491 - Identification of proteins that form specific complexes with the highly conserved protein Translin in Schizosaccharomyces pombe.
Eliahoo E et al. Biochim Biophys Acta 2014 Apr;1844(4):767-77
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:18062930 - Functional characterisation of the Schizosaccharomyces pombe homologue of the leukaemia-associated translocation breakpoint binding protein translin and its binding partner, TRAX.
Jaendling A et al. Biochim Biophys Acta 2008 Feb;1783(2):203-13
PMID:27183912 - Translin and Trax differentially regulate telomere-associated transcript homeostasis.
Gomez-Escobar N et al. Oncotarget 2016 Jun 07;7(23):33809-20
PMID:16043634 - Cloning and characterization of the Schizosaccharomyces pombe homologs of the human protein Translin and the Translin-associated protein TRAX.
Laufman O et al. Nucleic Acids Res 2005;33(13):4128-39
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:36098897 - Biochemical characterization of clinically relevant mutations of human Translin.
Pillai V et al. Mol Cell Biochem 2023 Apr;478(4):821-834
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:29259000 - Genes Important for Schizosaccharomyces pombe Meiosis Identified Through a Functional Genomics Screen.
Blyth J et al. Genetics 2018 Feb;208(2):589-603
PMID:20081200 - Mapping of interaction sites of the Schizosaccharomyces pombe protein Translin with nucleic acids and proteins: a combined molecular genetics and bioinformatics study.
Eliahoo E et al. Nucleic Acids Res 2010 May;38(9):2975-89
PMID:33260998 - High-Throughput Flow Cytometry Combined with Genetic Analysis Brings New Insights into the Understanding of Chromatin Regulation of Cellular Quiescence.
Zahedi Y et al. Int J Mol Sci 2020 Nov 27;21(23)
PMID:12161753 - The transcriptional program of meiosis and sporulation in fission yeast.
Mata J et al. Nat Genet 2002 Sep;32(1):143-7
PMID:16169489 - Novel genes required for meiotic chromosome segregation are identified by a high-throughput knockout screen in fission yeast.
Gregan J et al. Curr Biol 2005 Sep 20;15(18):1663-9
PMID:28357272 - A central role for TOR signalling in a yeast model for juvenile CLN3 disease.
Bond ME et al. Microb Cell 2015 Nov 11;2(12):466-480