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protein coding gene - rpe1 (SPAC31G5.05c) - ribulose phosphate 3-epimerase Rpe1

Gene summary

Standard name
rpe1
Systematic ID
SPAC31G5.05c
Product
ribulose phosphate 3-epimerase Rpe1
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
O14105
ORFeome ID
08/08G07
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 2994792..2995845 reverse strand

Annotation

GO biological process

GO:0009052 - pentose-phosphate shunt, non-oxidative branch

References:

GO cellular component

GO:0005829 - cytosol

References:

GO:0005634 - nucleus

References:

GO molecular function

GO:0004750 - D-ribulose-phosphate 3-epimerase activity

References:

GO:0046872 - metal ion binding

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:01149 - sumoylated lysine

References:

MOD:01148 - ubiquitinylated lysine

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0002187 - inviable normal volume spheroid vegetative cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF00834Ribul_P_3_epimRibul_P_3_epim-likePFAM
cd00429RPERibul_P_3_epim-likeCDD
PS01086RIBUL_P_3_EPIMER_2Ribul_P_3_epim-likePROSITE_PATTERNS
PS01085RIBUL_P_3_EPIMER_1Ribul_P_3_epim-likePROSITE_PATTERNS
G3DSA:3.20.20.70:FF:000171FUNFAM
SSF51366Ribulose-phoshate binding barrelRibuloseP-bd_barrelSUPERFAMILY
G3DSA:3.20.20.70Aldolase class IAldolase_TIMGENE3D
PTHR11749RIBULOSE-5-PHOSPHATE-3-EPIMERASERibul_P_3_epim-likePANTHER
PIRSF001461RPERibul_P_3_epimPIRSF
MF_02227RPERibul_P_3_epimHAMAP
NF004076PRK05581.1-4NCBIFAM
TIGR01163rpeRibul_P_3_epimNCBIFAM

Orthologs

References / Literature

PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.
Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:9872416 - Repression of enzymes of the pentose phosphate pathway by glucose in fission yeast.
Mehta S et al. FEBS Lett 1998 Dec 04;440(3):430-3
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:26412298 - A Degenerate Cohort of Yeast Membrane Trafficking DUBs Mediates Cell Polarity and Survival.
Beckley JR et al. Mol Cell Proteomics 2015 Dec;14(12):3132-41
PMID:26537787 - Targeting of SUMO substrates to a Cdc48-Ufd1-Npl4 segregase and STUbL pathway in fission yeast.
Køhler JB et al. Nat Commun 2015 Nov 05;6:8827