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protein coding gene - rnh201 (SPAC4G9.02) - ribonuclease H2 complex subunit Rnh201

Gene summary

Standard name
rnh201
Systematic ID
SPAC4G9.02
Product
ribonuclease H2 complex subunit Rnh201
Organism
Schizosaccharomyces pombe (fission yeast)
UniProt ID
Q10236
ORFeome ID
14/14B04
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 2254496..2255856 forward strand

Annotation

Disease association

MONDO:0012472 - Aicardi-Goutieres syndrome 4

References:

MONDO:0005071 - nervous system disorder

References:

GO biological process

GO:0070716 - mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication

References:

GO:0033260 - nuclear DNA replication

References:

GO:1990516 - ribonucleotide excision repair

References:

GO:0006401 - RNA catabolic process

References:

GO cellular component

GO:0005634 - nucleus

References:

GO:0032299 - ribonuclease H2 complex

References:

GO molecular function

GO:0003723 - RNA binding

References:

GO:0004523 - RNA-DNA hybrid ribonuclease activity

References:

Multi-locus phenotype

FYPO:0006321 - decreased protein localization to chromatin at stalled replication fork

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0007936 - increased number of DNA breakpoint junctions

References:

Genotypes:

FYPO:0004822 - increased number of R-loops at rDNA

References:

Genotypes:

FYPO:0006495 - increased number of R-loops at tRNA genes

References:

Genotypes:

FYPO:0000972 - increased number of Rad52 foci during vegetative growth

References:

Genotypes:

FYPO:0001038 - increased protein phosphorylation during vegetative growth

References:

Genotypes:

FYPO:0005031 - increased ribonucleotide incorporation on lagging strand

References:

Genotypes:

FYPO:0005030 - increased ribonucleotide incorporation on leading strand

References:

Genotypes:

FYPO:0001309 - increased viability in stationary phase

References:

Genotypes:

FYPO:0002059 - inviable cell population

References:

Genotypes:

FYPO:0000256 - mutator

References:

Genotypes:

FYPO:0005398 - normal frequency of double-strand break repair via homologous recombination

References:

Genotypes:

FYPO:0004229 - normal growth during cellular response to ionizing radiation

References:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

References:

Genotypes:

FYPO:0000472 - normal mating type switching

References:

Genotypes:

FYPO:0000085 - sensitive to camptothecin

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

References:

Genotypes:

FYPO:0003481 - viable elongated vegetative cell, elongated upon mitotic entry

References:

Genotypes:

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

PomGeneEx:0000012 - RNA level decreased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0007681 - abnormal RNA-DNA hybrid ribonuclease activity

References:

Genotypes:

FYPO:0009073 - decreased cell population growth on lysine nitrogen source

References:

Genotypes:

FYPO:0000708 - decreased mating efficiency

References:

Genotypes:

FYPO:0000636 - increased cell population growth rate

References:

Genotypes:

FYPO:0001908 - increased pre-mRNA level

References:

Genotypes:

FYPO:0007680 - increased ribonucleotide incorporation into DNA

References:

Genotypes:

FYPO:0001690 - normal growth on camptothecin

References:

Genotypes:

FYPO:0005680 - normal number of Rad52 foci during mitotic S phase

References:

Genotypes:

FYPO:0009038 - resistance to egtazic acid

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0009088 - sensitive to magnesium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0000797 - sensitive to tert-butyl hydroperoxide

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF01351RNase_HIIRNase_HII/HIII_domPFAM
cd07181RNase_HII_eukaryota_likeCDD
PS51975RNASE_H_2RNase_HII/HIII_domPROSITE_PROFILES
G3DSA:3.30.420.10:FF:000016FUNFAM
G3DSA:1.10.10.460:FF:000001FUNFAM
SSF53098Ribonuclease H-likeRNaseH-like_sfSUPERFAMILY
G3DSA:3.30.420.10RNaseH_sfGENE3D
G3DSA:1.10.10.460Ribonuclease hii. Domain 2RNase_HII_hlx-loop-hlx_cap_domGENE3D
PTHR10954RIBONUCLEASE H2 SUBUNIT ARNase_HII/HIIIPANTHER
mobidb-lite-Disorderdisorder_predictionMOBIDB-Disorder
mobidb-lite-Polardisorder_predictionMOBIDB-Polar
TIGR00729TIGR00729RNase_H2_suANCBIFAM

Orthologs

References / Literature

PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
GO_REF:0000002 - Comments
PMID:25664722 - A global profile of replicative polymerase usage.
Daigaku Y et al. Nat Struct Mol Biol 2015 Mar;22(3):192-198
PMID:28357272 - A central role for TOR signalling in a yeast model for juvenile CLN3 disease.
Bond ME et al. Microb Cell 2015 Nov 11;2(12):466-480
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:29622660 - RNase H eliminates R-loops that disrupt DNA replication but is nonessential for efficient DSB repair.
Zhao H et al. EMBO Rep 2018 May;19(5)
PMID:34464389 - R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements.
Ellis DA et al. PLoS Genet 2021 Aug;17(8):e1009784
PMID:33568651 - Replication dynamics of recombination-dependent replication forks.
Naiman K et al. Nat Commun 2021 Feb 10;12(1):923
PB_REF:0000003 - Disease Association Curation
GO_REF:0000024 - Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity.
PMID:25106870 - ATP insertion opposite 8-oxo-deoxyguanosine by Pol4 mediates error-free tolerance in Schizosaccharomyces pombe.
Sastre-Moreno G et al. Nucleic Acids Res 2014 Sep;42(15):9821-37
PMID:16537923 - Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.
Todd BL et al. Mol Cell Biol 2006 Apr;26(7):2817-31
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:29844133 - Loss of Elongation-Like Factor 1 Spontaneously Induces Diverse, RNase H-Related Suppressor Mutations in Schizosaccharomyces pombe .
Marayati BF et al. Genetics 2018 Aug;209(4):967-981
PMID:22144917 - The major roles of DNA polymerases epsilon and delta at the eukaryotic replication fork are evolutionarily conserved.
Miyabe I et al. PLoS Genet 2011 Dec;7(12):e1002407
PMID:28410370 - A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion.
Dudin O et al. PLoS Genet 2017 Apr;13(4):e1006721
PMID:27881299 - Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Ohle C et al. Cell 2016 Nov 03;167(4):1001-1013.e7
PMID:31294478 - Senataxin homologue Sen1 is required for efficient termination of RNA polymerase III transcription.
Rivosecchi J et al. EMBO J 2019 Aug 15;38(16):e101955
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:25452419 - Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence.
Sideri T et al. G3 (Bethesda) 2014 Dec 01;5(1):145-55
PMID:27172183 - Interconnections Between RNA-Processing Pathways Revealed by a Sequencing-Based Genetic Screen for Pre-mRNA Splicing Mutants in Fission Yeast.
Larson A et al. G3 (Bethesda) 2016 Jun 01;6(6):1513-23
PMID:36793083 - The SAGA histone acetyltransferase module targets SMC5/6 to specific genes.
Mahrik L et al. Epigenetics Chromatin 2023 Feb 16;16(1):6
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:18818364 - Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.
Roguev A et al. Science 2008 Oct 17;322(5900):405-10