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protein coding gene - ppt1 (SPAC56F8.04c) - para-hydroxybenzoate--polyprenyltransferase Ppt1

Gene summary

Standard name
ppt1
Systematic ID
SPAC56F8.04c
Product
para-hydroxybenzoate--polyprenyltransferase Ppt1
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
coq2
UniProt ID
Q10252
ORFeome ID
16/16F05
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 1133226..1134334 reverse strand

Annotation

Complementation

PBO:0036255 - functionally complemented by human COQ2

References:

PBO:0011973 - functionally complemented by S. cerevisiae COQ2

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Disease association

MONDO:0018151 - coenzyme Q10 deficiency

References:

MONDO:0011829 - coenzyme Q10 deficiency, primary, 1

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MONDO:0020715 - multiple system atrophy 1, susceptibility to

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GO biological process

GO:0008299 - isoprenoid biosynthetic process

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GO:0006744 - ubiquinone biosynthetic process

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GO cellular component

GO:0005743 - mitochondrial inner membrane

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GO:0005739 - mitochondrion

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GO molecular function

GO:0008412 - 4-hydroxybenzoate polyprenyltransferase activity

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Multi-locus phenotype

FYPO:0003374 - normal cellular coenzyme Q10 level

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Genotypes:

Protein sequence feature

SO:0001812 - transmembrane_helix

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Quantitative gene expression

PBO:0006310 - protein level

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PBO:0011963 - RNA level

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Single locus phenotype

FYPO:0001934 - abolished cell population growth on glycerol carbon source

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Genotypes:

FYPO:0003690 - abolished cell population growth on glycerol/ethanol carbon source

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Genotypes:

FYPO:0001712 - coenzyme Q10 absent from cell

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Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

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Genotypes:

FYPO:0000835 - decreased protein level

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Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

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Genotypes:

FYPO:0008128 - decreased vegetative cell population growth on low glucose

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Genotypes:

FYPO:0000246 - growth auxotrophic for antioxidant

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Genotypes:

FYPO:0002723 - increased cellular pigment accumulation during cellular response to cadmium ion

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Genotypes:

FYPO:0001413 - increased cellular sulfide level

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Genotypes:

FYPO:0000343 - increased concentration of hydrogen sulfide in growth medium

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Genotypes:

FYPO:0001489 - inviable vegetative cell

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Genotypes:

FYPO:0002061 - inviable vegetative cell population

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Genotypes:

FYPO:0000245 - loss of viability in stationary phase

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Genotypes:

FYPO:0001409 - normal growth on glycerol carbon source

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Genotypes:

FYPO:0000073 - resistance to caffeine

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Genotypes:

FYPO:0004325 - sensitive to 5-fluorouracil

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Genotypes:

FYPO:0009067 - sensitive to amorolfine

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Genotypes:

FYPO:0001701 - sensitive to bortezomib

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Genotypes:

FYPO:0000096 - sensitive to cadmium

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Genotypes:

FYPO:0000102 - sensitive to cisplatin

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Genotypes:

FYPO:0001245 - sensitive to cobalt

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Genotypes:

FYPO:0000103 - sensitive to copper

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Genotypes:

FYPO:0003559 - sensitive to doxorubicin

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Genotypes:

FYPO:0000087 - sensitive to hydrogen peroxide

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Genotypes:

FYPO:0000089 - sensitive to methyl methanesulfonate

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Genotypes:

FYPO:0000271 - sensitive to salt stress

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Genotypes:

FYPO:0001234 - slow vegetative cell population growth

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Genotypes:

FYPO:0001491 - viable vegetative cell

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Genotypes:

FYPO:0002060 - viable vegetative cell population

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Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Warnings

PBO:0000070 - gene structure updated

Protein features

IDNameInterPro nameDB name
PF01040UbiAUbiA_prenyltransferasePFAM
cd13959PT_UbiA_COQ2PrenyltransferaseCDD
PS00943UBIAUbiA_prenylTrfase_CSPROSITE_PATTERNS
G3DSA:1.10.357.140:FF:000003FUNFAM
G3DSA:1.20.120.1780:FF:000001FUNFAM
G3DSA:1.10.357.140UbiA prenyltransferaseUbiA_sfGENE3D
PTHR11048PRENYLTRANSFERASESPrenyltransferasePANTHER
MF_01635UbiAHB_polyprenyltransferase-likeHAMAP
TIGR01474ubiA_proteoHB_polyprenyltransferase-likeNCBIFAM

Orthologs

References / Literature

PMID:18665268 - Mitochondrial dysfunction increases oxidative stress and decreases chronological life span in fission yeast.
Zuin A et al. PLoS One 2008 Jul 30;3(7):e2842
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:18684775 - A genome-wide screen of genes involved in cadmium tolerance in Schizosaccharomyces pombe.
Kennedy PJ et al. Toxicol Sci 2008 Nov;106(1):124-39
PMID:19672306 - Genome-wide screen of genes required for caffeine tolerance in fission yeast.
Calvo IA et al. PLoS One 2009 Aug 12;4(8):e6619
PMID:16400613 - A mutation in para-hydroxybenzoate-polyprenyl transferase (COQ2) causes primary coenzyme Q10 deficiency.
Quinzii C et al. Am J Hum Genet 2006 Feb;78(2):345-9
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:42024429 - Mitochondrial NADP+-isocitrate dehydrogenase Idp1 involves CoQ biosynthesis in parallel with NAD kinase Pos5.
Nishihara S et al. Biosci Biotechnol Biochem 2026 Apr 23;
PMID:11152613 - Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A et al. J Mol Biol 2001 Jan 19;305(3):567-80
PB_REF:0000003 - Disease Association Curation
PMID:27053105 - Mga2 Transcription Factor Regulates an Oxygen-responsive Lipid Homeostasis Pathway in Fission Yeast.
Burr R et al. J Biol Chem 2016 Jun 03;291(23):12171-83
PMID:37445861 - Resistance to Chemotherapeutic 5-Fluorouracil Conferred by Modulation of Heterochromatic Integrity through Ino80 Function in Fission Yeast.
Lim KK et al. Int J Mol Sci 2023 Jun 26;24(13)
PMID:24911838 - Functional conservation of coenzyme Q biosynthetic genes among yeasts, plants, and humans.
Hayashi K et al. PLoS One 2014;9(6):e99038
PMID:26896847 - Ensembl comparative genomics resources.
Herrero J et al. Database (Oxford) 2016;2016
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:26791325 - Predicting chemotherapeutic drug combinations through gene network profiling.
Nguyen TT et al. Sci Rep 2016 Jan 21;6:18658
PMID:14695938 - Pleiotropic phenotypes of fission yeast defective in ubiquinone-10 production. A study from the abc1Sp (coq8Sp) mutant.
Saiki R et al. Biofactors 2003;18(1-4):229-35
PMID:33232355 - Benzoic acid inhibits Coenzyme Q biosynthesis in Schizosaccharomyces pombe.
Nishida I et al. PLoS One 2020;15(11):e0242616
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:11092853 - Phenotypes of fission yeast defective in ubiquinone production due to disruption of the gene for p-hydroxybenzoate polyprenyl diphosphate transferase.
Uchida N et al. J Bacteriol 2000 Dec;182(24):6933-9
PMID:25647499 - Production of CoQ10 in fission yeast by expression of genes responsible for CoQ10 biosynthesis.
Moriyama D et al. Biosci Biotechnol Biochem 2015;79(6):1026-33
PMID:21760946 - Identification of genes affecting the toxicity of anti-cancer drug bortezomib by genome-wide screening in S. pombe.
Takeda K et al. PLoS One 2011;6(7):e22021
PMID:37156397 - Identification of novel coenzyme Q 10 biosynthetic proteins Coq11 and Coq12 in Schizosaccharomyces pombe.
Nishida I et al. J Biol Chem 2023 Jun;299(6):104797
PMID:37859837 - In fission yeast, 65 non-essential mitochondrial proteins related to respiration and stress become essential in low-glucose conditions.
Mori A et al. R Soc Open Sci 2023 Oct;10(10):230404
GO_REF:0000104 - Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.
PMID:17069919 - Phenotypes and fed-batch fermentation of ubiquinone-overproducing fission yeast using ppt1 gene.
Zhang D et al. J Biotechnol 2007 Jan 30;128(1):120-31
PMID:26771498 - A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
Vo TV et al. Cell 2016 Jan 14;164(1-2):310-323
PMID:21965289 - Nsk1 ensures accurate chromosome segregation by promoting association of kinetochores to spindle poles during anaphase B.
Buttrick GJ et al. Mol Biol Cell 2011 Dec;22(23):4486-502
PB_REF:0000006 - Disease associations from Monarch via human-pombe orthologs
PMID:25669599 - Fitness profiling links topoisomerase II regulation of centromeric integrity to doxorubicin resistance in fission yeast.
Nguyen TT et al. Sci Rep 2015 Feb 11;5:8400
PMID:23365689 - Cellular robustness conferred by genetic crosstalk underlies resistance against chemotherapeutic drug doxorubicin in fission yeast.
Tay Z et al. PLoS One 2013;8(1):e55041