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protein coding gene - arp3 (SPAC630.03) - ARP2/3 actin-organizing complex actin-related protein subunit Arp3

Gene summary

Standard name
arp3
Systematic ID
SPAC630.03
Product
ARP2/3 actin-organizing complex actin-related protein subunit Arp3
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
act2
UniProt ID
P32390
ORFeome ID
33/33C01
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 350433..352296 forward strand

Annotation

GO biological process

GO:0044396 - actin cortical patch organization

References:

GO:0090135 - actin filament branching

References:

GO:0030041 - actin filament polymerization

References:

GO:0034314 - Arp2/3 complex-mediated actin nucleation

References:

GO:0072583 - clathrin-dependent endocytosis

References:

GO:0045324 - late endosome to vacuole transport

References:

GO cellular component

GO:0030479 - actin cortical patch

References:

GO:0005885 - Arp2/3 protein complex

References:

GO:0051285 - cell cortex of cell tip

References:

GO:0032153 - cell division site

References:

GO:0005737 - cytoplasm

References:

GO:0005829 - cytosol

References:

GO molecular function

GO:0051015 - actin filament binding

References:

GO:0005524 - ATP binding

References:

GO:0005515 - protein binding

References:

GO:0005200 - structural constituent of cytoskeleton

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:01148 - ubiquitinylated lysine

References:

Multi-locus phenotype

FYPO:0004964 - actin cortical patches present in decreased numbers

References:

Genotypes:

FYPO:0001008 - actomyosin contractile ring absent

References:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

References:

Genotypes:

FYPO:0004085 - decreased vegetative cell growth

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0002302 - inviable after spore germination, multiple cell divisions, spheroid cell

References:

Genotypes:

FYPO:0002150 - inviable spore population

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0003210 - mislocalized, misoriented septum

References:

Genotypes:

FYPO:0002022 - normal actin cortical patch morphology

References:

Genotypes:

FYPO:0006213 - normal septum morphology

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

Qualitative gene expression

PomGeneEx:0000011 - RNA level increased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0002373 - abnormal actin cortical patch localization during mitosis

References:

Genotypes:

FYPO:0003000 - abolished actin filament polymerization

References:

Genotypes:

FYPO:0001008 - actomyosin contractile ring absent

References:

Genotypes:

FYPO:0003171 - binucleate monoseptate cell with mitotic cell cycle arrest before cell separation

References:

Genotypes:

FYPO:0007060 - decreased actin filament depolymerization involved in actomyosin contractile ring assembly

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

References:

Genotypes:

FYPO:0004470 - decreased protein localization to actomyosin contractile ring during mitotic anaphase

References:

Genotypes:

FYPO:0006176 - decreased rate of actin cortical patch localization

References:

Genotypes:

FYPO:0001365 - decreased rate of actomyosin contractile ring contraction

References:

Genotypes:

FYPO:0003014 - decreased rate of actomyosin contractile ring disassembly

References:

Genotypes:

FYPO:0005628 - decreased rate of cell separation after cytokinesis

References:

Genotypes:

FYPO:0004653 - delayed onset of actomyosin contractile ring contraction

References:

Genotypes:

FYPO:0006797 - delayed onset of cell separation after cytokinesis

References:

Genotypes:

FYPO:0000639 - delayed onset of septum assembly

References:

Genotypes:

FYPO:0002021 - dispersed actin cortical patch localization during vegetative growth

References:

Genotypes:

FYPO:0002858 - increased (1->3)-beta-D-glucan level at cell tip

References:

Genotypes:

FYPO:0004558 - inviable after spore germination, without cell division, with abnormal cell morphology and abnormal actin cortical patch localization

References:

Genotypes:

FYPO:0002207 - inviable swollen spore

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0002444 - loss of punctate cytoplasmic protein localization

References:

Genotypes:

FYPO:0002888 - mitotic cell cycle arrest before cell separation

References:

Genotypes:

FYPO:0000324 - mitotic metaphase/anaphase transition delay

References:

Genotypes:

FYPO:0002022 - normal actin cortical patch morphology

References:

Genotypes:

FYPO:0001368 - normal actomyosin contractile ring assembly

References:

Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0002863 - slow cell growth during recovery from nitrogen starvation

References:

Genotypes:

FYPO:0000647 - vegetative cell lysis

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF00022ActinActinPfam
cd10221ASKHA_NBD_Arp3-likeCDD
PS01132ACTINS_ACT_LIKEActin/actin-like_CSPROSITE patterns
SM00268ACTINActinSMART
G3DSA:3.30.420.40:FF:000029CATH-FunFam
G3DSA:3.30.420.40:FF:000058CATH-FunFam
G3DSA:3.90.640.10:FF:000006CATH-FunFam
G3DSA:3.30.420.40CATH-Gene3D
G3DSA:3.90.640.10CATH-Gene3D
SSF53067ATPase_NBDSUPERFAMILY
PTHR11937ActinPANTHER

Orthologs

References / Literature

PMID:17412958 - A conserved family of enzymes that phosphorylate inositol hexakisphosphate.
Mulugu S et al. Science 2007 Apr 06;316(5821):106-9
PMID:18640983 - Structure and biochemical properties of fission yeast Arp2/3 complex lacking the Arp2 subunit.
Nolen BJ et al. J Biol Chem 2008 Sep 26;283(39):26490-8
PMID:11231572 - Role of actin polymerization and actin cables in actin-patch movement in Schizosaccharomyces pombe.
Pelham RJ et al. Nat Cell Biol 2001 Mar;3(3):235-44
PMID:8978671 - The Schizosaccharomyces pombe actin-related protein, Arp3, is a component of the cortical actin cytoskeleton and interacts with profilin.
McCollum D et al. EMBO J 1996 Dec 02;15(23):6438-46
PMID:20517925 - GMF is an evolutionarily developed Adf/cofilin-super family protein involved in the Arp2/3 complex-mediated organization of the actin cytoskeleton.
Nakano K et al. Cytoskeleton (Hoboken) 2010 Jun;67(6):373-82
PMID:10388810 - Identification and characterization of Schizosaccharomyces pombe asp1(+), a gene that interacts with mutations in the Arp2/3 complex and actin.
Feoktistova A et al. Genetics 1999 Jul;152(3):895-908
GO_REF:0000111 - Gene Ontology annotations Inferred by Curator (IC) using at least one Inferred by Sequence Similarity (ISS) annotation to support the inference
PMID:18165685 - Pathway of actin filament branch formation by Arp2/3 complex.
Beltzner CC et al. J Biol Chem 2008 Mar 14;283(11):7135-44
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:21676862 - Structural and biochemical characterization of two binding sites for nucleation-promoting factor WASp-VCA on Arp2/3 complex.
Ti SC et al. Proc Natl Acad Sci U S A 2011 Aug 16;108(33):E463-71
PMID:23148219 - Insertions within the actin core of actin-related protein 3 (Arp3) modulate branching nucleation by Arp2/3 complex.
Liu SL et al. J Biol Chem 2013 Jan 04;288(1):487-97
PMID:38448439 - Cryo-EM structures reveal how phosphate release from Arp3 weakens actin filament branches formed by Arp2/3 complex.
Chavali SS et al. Nat Commun 2024 Mar 06;15(1):2059
PMID:41850284 - Arp2/3-dependent actin assembly shapes endosomes and promotes intracellular trafficking in fission yeast.
Melero A et al. Curr Biol 2026 Mar 17;
PMID:37531259 - Membrane binding of endocytic myosin-1s is inhibited by a class of ankyrin repeat proteins.
Willet AH et al. Mol Biol Cell 2023 Oct 01;34(11):br17
PMID:21642440 - Actin filament bundling by fimbrin is important for endocytosis, cytokinesis, and polarization in fission yeast.
Skau CT et al. J Biol Chem 2011 Jul 29;286(30):26964-77
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:30709916 - A Cdc42 GEF, Gef1, through endocytosis organizes F-BAR Cdc15 along the actomyosin ring and promotes concentric furrowing.
Onwubiko UN et al. J Cell Sci 2019 Feb 28;132(5)
PMID:16087707 - Interactions of WASp, myosin-I, and verprolin with Arp2/3 complex during actin patch assembly in fission yeast.
Sirotkin V et al. J Cell Biol 2005 Aug 15;170(4):637-48
PMID:30726745 - Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex.
Tay YD et al. Cell Rep 2019 Feb 05;26(6):1654-1667.e7
PMID:37970674 - SUMOylation regulates Lem2 function in centromere clustering and silencing.
Strachan J et al. J Cell Sci 2023 Dec 01;136(23)
PMID:10588653 - A mutant of Arp2p causes partial disassembly of the Arp2/3 complex and loss of cortical actin function in fission yeast.
Morrell JL et al. Mol Biol Cell 1999 Dec;10(12):4201-15
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:20668161 - Proteasome nuclear import mediated by Arc3 can influence efficient DNA damage repair and mitosis in Schizosaccharomyces pombe.
Cabrera R et al. Mol Biol Cell 2010 Sep 15;21(18):3125-36
PMID:36442092 - Mechanism of actin filament branch formation by Arp2/3 complex revealed by a high-resolution cryo-EM structureof the branch junction.
Chou SZ et al. Proc Natl Acad Sci U S A 2022 Dec 06;119(49):e2206722119
PMID:16224022 - Counting cytokinesis proteins globally and locally in fission yeast.
Wu JQ et al. Science 2005 Oct 14;310(5746):310-4
PMID:16537923 - Sterol regulatory element binding protein is a principal regulator of anaerobic gene expression in fission yeast.
Todd BL et al. Mol Cell Biol 2006 Apr;26(7):2817-31
PMID:25543282 - Profilin regulates F-actin network homeostasis by favoring formin over Arp2/3 complex.
Suarez C et al. Dev Cell 2015 Jan 12;32(1):43-53
PMID:24763107 - Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast).
Carpy A et al. Mol Cell Proteomics 2014 Aug;13(8):1925-36
PMID:15743909 - Profilin-mediated competition between capping protein and formin Cdc12p during cytokinesis in fission yeast.
Kovar DR et al. Mol Biol Cell 2005 May;16(5):2313-24
PMID:12214236 - Actin dynamics in the contractile ring during cytokinesis in fission yeast.
Pelham RJ et al. Nature 2002 Sep 05;419(6902):82-6
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
PMID:27417392 - Identification of an ATP-controlled allosteric switch that controls actin filament nucleation by Arp2/3 complex.
Rodnick-Smith M et al. Nat Commun 2016 Jul 15;7:12226
PMID:28218250 - Chromatin remodeller Fun30 Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.
Lee J et al. Nat Commun 2017 Feb 20;8:14527
PMID:30150414 - Conformational changes in Arp2/3 complex induced by ATP, WASp-VCA, and actin filaments.
Espinoza-Sanchez S et al. Proc Natl Acad Sci U S A 2018 Sep 11;115(37):E8642-E8651
PMID:19362000 - Cofilin dissociates Arp2/3 complex and branches from actin filaments.
Chan C et al. Curr Biol 2009 Apr 14;19(7):537-45
PMID:16864655 - Assembly of the cytokinetic contractile ring from a broad band of nodes in fission yeast.
Wu JQ et al. J Cell Biol 2006 Jul 31;174(3):391-402
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:39012625 - Arp2/3-dependent endocytosis ensures Cdc42 oscillations by removing Pak1-mediated negative feedback.
Harrell MA et al. J Cell Biol 2024 Sep 02;223(10)
PMID:40015273 - A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin.
Skribbe M et al. Mol Cell 2025 Feb 19;
PMID:30471998 - Dip1 Co-opts Features of Branching Nucleation to Create Linear Actin Filaments that Activate WASP-Bound Arp2/3 Complex.
Balzer CJ et al. Curr Biol 2018 Dec 03;28(23):3886-3891.e4
PMID:9765059 - Subcellular localization and possible function of actin, tropomyosin and actin-related protein 3 (Arp3) in the fission yeast Schizosaccharomyces pombe.
Arai R et al. Eur J Cell Biol 1998 Aug;76(4):288-95
PMID:20624911 - Asp1, a conserved 1/3 inositol polyphosphate kinase, regulates the dimorphic switch in Schizosaccharomyces pombe.
Pöhlmann J et al. Mol Cell Biol 2010 Sep;30(18):4535-47
PMID:24127216 - The formins Cdc12 and For3 cooperate during contractile ring assembly in cytokinesis.
Coffman VC et al. J Cell Biol 2013 Oct 14;203(1):101-14
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:24120641 - Dip1 defines a class of Arp2/3 complex activators that function without preformed actin filaments.
Wagner AR et al. Curr Biol 2013 Oct 21;23(20):1990-8
PMID:8978670 - Fission yeast Sop2p: a novel and evolutionarily conserved protein that interacts with Arp3p and modulates profilin function.
Balasubramanian MK et al. EMBO J 1996 Dec 02;15(23):6426-37
PMID:1729722 - Identification of act2, an essential gene in the fission yeast Schizosaccharomyces pombe that encodes a protein related to actin.
Lees-Miller JP et al. Proc Natl Acad Sci U S A 1992 Jan 01;89(1):80-3
PMID:11294907 - Roles of a fimbrin and an alpha-actinin-like protein in fission yeast cell polarization and cytokinesis.
Wu JQ et al. Mol Biol Cell 2001 Apr;12(4):1061-77
PMID:21449051 - Schizosaccharomyces pombe Arc3 is a conserved subunit of the Arp2/3 complex required for polarity, actin organization, and endocytosis.
Cabrera R et al. Yeast 2011 Jun;28(6):495-503
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:32839613 - Cryo-EM reveals the transition of Arp2/3 complex from inactive to nucleation-competent state.
Shaaban M et al. Nat Struct Mol Biol 2020 Nov;27(11):1009-1016
PMID:31064814 - Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast.
Larochelle M et al. J Cell Sci 2019 May 31;132(11)
PMID:25720772 - Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1.
Kettenbach AN et al. Mol Cell Proteomics 2015 May;14(5):1275-87
PMID:16866873 - Actin-capping protein is involved in controlling organization of actin cytoskeleton together with ADF/cofilin, profilin and F-actin crosslinking proteins in fission yeast.
Nakano K et al. Genes Cells 2006 Aug;11(8):893-905
PMID:20587778 - Quantitative analysis of the mechanism of endocytic actin patch assembly and disassembly in fission yeast.
Sirotkin V et al. Mol Biol Cell 2010 Aug 15;21(16):2894-904
PMID:22730331 - Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions.
Nie M et al. J Biol Chem 2012 Aug 24;287(35):29610-9