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protein coding gene - swi6 (SPAC664.01c) - heterochromatin (HP1) family chromodomain protein Swi6

Gene summary

Standard name
swi6
Systematic ID
SPAC664.01c
Product
heterochromatin (HP1) family chromodomain protein Swi6
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
SPAC824.10c
UniProt ID
P40381
ORFeome ID
14/14C10
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 1702406..1704098 reverse strand

Annotation

GO biological process

GO:0006325 - chromatin organization

References:

GO:0033562 - co-transcriptional gene silencing by RNA interference machinery

References:

GO:0007535 - donor selection

References:

GO:0007534 - gene conversion at mating-type locus

References:

GO:0033696 - heterochromatin boundary formation

References:

GO:0031507 - heterochromatin formation

References:

GO:0007533 - mating type switching

References:

GO:1990813 - meiotic centromeric cohesion protection in anaphase I

References:

GO:1990758 - mitotic sister chromatid biorientation

References:

GO:0071962 - mitotic sister chromatid cohesion, centromeric

References:

GO:0044820 - mitotic telomere tethering at nuclear periphery

References:

GO:0031508 - pericentric heterochromatin formation

References:

GO:0030466 - silent mating-type cassette heterochromatin formation

References:

GO:0140727 - siRNA-mediated pericentric heterochromatin formation

References:

GO:0140185 - siRNA-mediated silent mating type cassette region heterochromatin formation

References:

GO:0031509 - subtelomeric heterochromatin formation

References:

GO cellular component

GO:0000785 - chromatin

References:

GO:0000779 - condensed chromosome, centromeric region

References:

GO:0000792 - heterochromatin

References:

GO:1990342 - heterochromatin island

References:

GO:0031934 - mating-type region heterochromatin

References:

GO:0005634 - nucleus

References:

GO:0005721 - pericentric heterochromatin

References:

GO:0140720 - subtelomeric heterochromatin

References:

GO molecular function

GO:0140463 - chromatin-protein adaptor activity

References:

GO:0003677 - DNA binding

References:

GO:0062072 - histone H3K9me2/3 reader activity

References:

GO:0005515 - protein binding

References:

GO:0003723 - RNA binding

References:

Modification

MOD:00046 - O-phospho-L-serine

References:

MOD:00047 - O-phospho-L-threonine

References:

MOD:00696 - phosphorylated residue

References:

MOD:01149 - sumoylated lysine

References:

Multi-locus phenotype

FYPO:0004159 - abnormal homologous chromosome segregation

References:

Genotypes:

FYPO:0000468 - abnormal mating type switching

References:

Genotypes:

FYPO:0000141 - abnormal mitotic sister chromatid segregation

References:

Genotypes:

FYPO:0003097 - abolished histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0000469 - abolished mating type switching

References:

Genotypes:

FYPO:0000634 - abolished protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0008153 - abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0000082 - decreased cell population growth at high temperature

References:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

References:

Genotypes:

FYPO:0000278 - decreased cell population growth following spore germination

References:

Genotypes:

FYPO:0001407 - decreased cell population growth on glucose carbon source

References:

Genotypes:

FYPO:0003094 - decreased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0002353 - decreased chromatin silencing

References:

Genotypes:

FYPO:0002834 - decreased chromatin silencing at centromere

References:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

Genotypes:

FYPO:0006993 - decreased chromatin silencing at centromere otr1R

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0007009 - decreased heterochromatin assembly by small RNA

References:

Genotypes:

FYPO:0000888 - decreased histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0003096 - decreased histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0005533 - decreased histone H4-K16 acetylation at boundary element IRC1L during vegetative growth

References:

Genotypes:

FYPO:0000470 - decreased mating type switching

References:

Genotypes:

FYPO:0008424 - decreased silent mating-type cassette transcript-derived siRNA level

References:

Genotypes:

FYPO:0001355 - decreased vegetative cell population growth

References:

Genotypes:

FYPO:0005911 - delayed onset of meiotic recombination double-strand break repair

References:

Genotypes:

FYPO:0003566 - delayed onset of mitotic spindle pole body separation

References:

Genotypes:

FYPO:0005286 - heterochromatin assembly beyond boundary element IRC1L

References:

Genotypes:

FYPO:0003045 - heterochromatin assembly beyond boundary element IRC1R

References:

Genotypes:

FYPO:0003557 - increased antisense RNA level

References:

Genotypes:

FYPO:0003937 - increased cell population growth

References:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0000274 - increased duration of mitotic M phase

References:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

References:

Genotypes:

FYPO:0000873 - increased histone H3-K9 dimethylation during vegetative growth

References:

Genotypes:

FYPO:0002354 - increased level of heterochromatin-encoded proteins

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0005868 - increased mitotic recombination at rDNA

References:

Genotypes:

FYPO:0005026 - increased protein localization to chromatin at chromosome arms

References:

Genotypes:

FYPO:0004237 - increased protein localization to heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0001489 - inviable vegetative cell

References:

Genotypes:

FYPO:0002061 - inviable vegetative cell population

References:

Genotypes:

FYPO:0000228 - lagging mitotic chromosomes

References:

Genotypes:

FYPO:0000245 - loss of viability in stationary phase

References:

Genotypes:

FYPO:0001886 - meiotic cell cycle entry and sporulation in haploid

References:

Genotypes:

FYPO:0004381 - merotelic kinetochore attachment during mitosis

References:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

References:

Genotypes:

FYPO:0002141 - normal cell population growth at low temperature

References:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004310 - normal duration of mitotic M phase

References:

Genotypes:

FYPO:0007479 - normal epigenetic heterochromatin inheritance

References:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

References:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

References:

Genotypes:

FYPO:0008209 - normal histone H3-K14 acetylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0002359 - normal histone H3-K9 dimethylation at telomere during vegetative growth

References:

Genotypes:

FYPO:0000472 - normal mating type switching

References:

Genotypes:

FYPO:0005136 - normal meiotic DNA double-strand break formation

References:

Genotypes:

FYPO:0001007 - normal mitosis

References:

Genotypes:

FYPO:0007853 - normal protein localization to centromere

References:

Genotypes:

FYPO:0004378 - normal protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0002687 - normal telomere length during vegetative growth

References:

Genotypes:

FYPO:0007629 - normal viability during G0

References:

Genotypes:

FYPO:0001310 - normal viability in stationary phase

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0000732 - short bipolar mitotic spindle

References:

Genotypes:

FYPO:0007304 - short bipolar mitotic spindle during anaphase

References:

Genotypes:

FYPO:0002239 - shortened telomeres during vegetative growth

References:

Genotypes:

FYPO:0003182 - sister chromatid nondisjunction at meiosis II

References:

Genotypes:

FYPO:0005633 - sister kinetochore dissociation in meiotic metaphase I, normal chromosome segregation in meiosis I, and sister chromatid non-disjunction in meiosis II

References:

Genotypes:

FYPO:0001234 - slow vegetative cell population growth

References:

Genotypes:

FYPO:0003241 - unequal mitotic sister chromatid segregation

References:

Genotypes:

FYPO:0001492 - viable elongated vegetative cell

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

Protein features

PBO:0111831 - chromodomain protein

PBO:0111837 - HP1/CBX family

Qualitative gene expression

PomGeneEx:0000018 - protein level increased

References:

PomGeneEx:0000012 - RNA level decreased

References:

Quantitative gene expression

PBO:0006310 - protein level

References:

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0000620 - abnormal cell cycle arrest in mitotic metaphase

References:

Genotypes:

FYPO:0000156 - abnormal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0000217 - abnormal DNA replication

References:

Genotypes:

FYPO:0000468 - abnormal mating type switching

References:

Genotypes:

FYPO:0003659 - abnormal mating type switching resulting in duplication or deletion in mating-type region

References:

Genotypes:

FYPO:0000151 - abnormal meiotic chromosome segregation

References:

Genotypes:

FYPO:0003346 - abnormal meiotic recombination at silent mating-type cassette

References:

Genotypes:

FYPO:0001131 - abnormal protein localization to heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0003066 - abnormal sporulation resulting in formation of ascus with fewer than four spores

References:

Genotypes:

FYPO:0007334 - abolished chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0000659 - abolished DNA binding

References:

Genotypes:

FYPO:0000469 - abolished mating type switching

References:

Genotypes:

FYPO:0000634 - abolished protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0003744 - abolished protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0008153 - abolished protein localization to heterochromatin at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0001132 - abolished protein localization to heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0003074 - abolished protein localization to pericentric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0005396 - abolished protein localization to subtelomeric heterochromatin

References:

Genotypes:

FYPO:0000705 - abolished protein-protein interaction

References:

Genotypes:

FYPO:0002133 - abolished protein-RNA interaction

References:

Genotypes:

FYPO:0000273 - centromeric outer repeat transcripts absent

References:

Genotypes:

FYPO:0006362 - decreased borderline-derived siRNA level

References:

Genotypes:

FYPO:0000080 - decreased cell population growth at low temperature

References:

Genotypes:

FYPO:0003094 - decreased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0004201 - decreased centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0006684 - decreased centromeric transcript binding

References:

Genotypes:

FYPO:0002353 - decreased chromatin silencing

References:

Genotypes:

FYPO:0002834 - decreased chromatin silencing at centromere

References:

Genotypes:

FYPO:0003411 - decreased chromatin silencing at centromere inner repeat

References:

Genotypes:

FYPO:0003412 - decreased chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002827 - decreased chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0004604 - decreased chromatin silencing at subtelomere

References:

Genotypes:

FYPO:0000658 - decreased DNA binding

References:

Genotypes:

FYPO:0003352 - decreased DNA double-strand break formation at mating-type locus

References:

Genotypes:

FYPO:0007009 - decreased heterochromatin assembly by small RNA

References:

Genotypes:

FYPO:0002611 - decreased histone H2A phosphorylation at subtelomeric heterochromatin during mitotic S phase

References:

Genotypes:

FYPO:0000877 - decreased histone H3-K9 dimethylation at centromere during vegetative growth

References:

Genotypes:

FYPO:0002355 - decreased histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0004137 - decreased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0005845 - decreased histone H3-K9 trimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0000470 - decreased mating type switching

References:

Genotypes:

FYPO:0000460 - decreased mitotic centromeric sister chromatid cohesion

References:

Genotypes:

FYPO:0006359 - decreased protein exchange at pericentric heterochromatin

References:

Genotypes:

FYPO:0006370 - decreased protein exchange at subtelomeric heterochromatin

References:

Genotypes:

FYPO:0003681 - decreased protein level at centromere outer repeat heterochromatin

References:

Genotypes:

FYPO:0000450 - decreased protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0002842 - decreased protein localization to centromere outer repeat

References:

Genotypes:

FYPO:0006599 - decreased protein localization to centromeric chromatin during vegetative growth

References:

Genotypes:

FYPO:0005167 - decreased protein localization to chromatin at centromere inner repeat

References:

Genotypes:

FYPO:0006818 - decreased protein localization to chromatin at centromere outer repeat

References:

Genotypes:

FYPO:0003573 - decreased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0004212 - decreased protein localization to kinetochore during meiosis I

References:

Genotypes:

FYPO:0008422 - decreased protein localization to pericentric heterochromatin

References:

Genotypes:

FYPO:0002386 - decreased protein localization to pericentric heterochromatin at centromere outer repeat region

References:

Genotypes:

FYPO:0005918 - decreased protein localization to subtelomeric heterochromatin

References:

Genotypes:

FYPO:0002387 - decreased protein localization to subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0002679 - decreased protein phosphorylation

References:

Genotypes:

FYPO:0002134 - decreased protein-RNA interaction

References:

Genotypes:

FYPO:0004205 - decreased siRNA level

References:

Genotypes:

FYPO:0007891 - decreased spatial extent of mating-type region heterochromatin assembly

References:

Genotypes:

FYPO:0000581 - decreased spore germination frequency

References:

Genotypes:

FYPO:0005286 - heterochromatin assembly beyond boundary element IRC1L

References:

Genotypes:

FYPO:0003045 - heterochromatin assembly beyond boundary element IRC1R

References:

Genotypes:

FYPO:0004806 - incomplete cell wall disassembly at cell fusion site

References:

Genotypes:

FYPO:0002638 - increased activation of mitotic spindle assembly checkpoint

References:

Genotypes:

FYPO:0003557 - increased antisense RNA level

References:

Genotypes:

FYPO:0003938 - increased cell population growth during glucose starvation

References:

Genotypes:

FYPO:0005261 - increased cell population growth on galactose carbon source

References:

Genotypes:

FYPO:0009094 - increased cell population growth on lysine and proline nitrogen source

References:

Genotypes:

FYPO:0009072 - increased cell population growth on lysine nitrogen source

References:

Genotypes:

FYPO:0009098 - increased cell population growth on mannitol carbon source

References:

Genotypes:

FYPO:0009028 - increased cell population growth on proline nitrogen source

References:

Genotypes:

FYPO:0007339 - increased cen-dg RNA level

References:

Genotypes:

FYPO:0000220 - increased centromeric outer repeat transcript level

References:

Genotypes:

FYPO:0002836 - increased centromeric outer repeat transcript-derived siRNA level

References:

Genotypes:

FYPO:0004376 - increased chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0000657 - increased DNA binding

References:

Genotypes:

FYPO:0000274 - increased duration of mitotic M phase

References:

Genotypes:

FYPO:0001740 - increased gross chromosomal rearrangement

References:

Genotypes:

FYPO:0000966 - increased histone H3-K14 acetylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0006681 - increased histone H3-K9 acetylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0006373 - increased histone H3-K9 dimethylation at heterochromatin island during vegetative growth

References:

Genotypes:

FYPO:0006268 - increased histone H3-K9 dimethylation at protein coding gene during vegetative growth

References:

Genotypes:

FYPO:0006361 - increased histone H3-K9 dimethylation at subtelomeric heterochromatin during vegetative growth

References:

Genotypes:

FYPO:0008196 - increased histone H3-K9Me binding

References:

Genotypes:

FYPO:0002354 - increased level of heterochromatin-encoded proteins

References:

Genotypes:

FYPO:0000471 - increased mating type switching

References:

Genotypes:

FYPO:0003792 - increased meiotic DNA double-strand break formation at silent mating-type cassette

References:

Genotypes:

FYPO:0003791 - increased meiotic recombination at silent mating-type cassette

References:

Genotypes:

FYPO:0001840 - increased minichromosome loss during vegetative growth

References:

Genotypes:

FYPO:0005868 - increased mitotic recombination at rDNA

References:

Genotypes:

FYPO:0006300 - increased protein localization to heterochromatin at centromere inner repeat

References:

Genotypes:

FYPO:0004377 - increased protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0000825 - increased RNA level during vegetative growth

References:

Genotypes:

FYPO:0006110 - increased silent mating-type cassette transcript-derived siRNA level

References:

Genotypes:

FYPO:0004749 - increased spatial extent of subtelomeric heterochromatin assembly

References:

Genotypes:

FYPO:0000780 - increased transcription during vegetative growth

References:

Genotypes:

FYPO:0007391 - inviable aneuploid spore

References:

Genotypes:

FYPO:0000228 - lagging mitotic chromosomes

References:

Genotypes:

FYPO:0005863 - loss of punctate nuclear protein localization

References:

Genotypes:

FYPO:0006518 - loss of viability in G0

References:

Genotypes:

FYPO:0000245 - loss of viability in stationary phase

References:

Genotypes:

FYPO:0006660 - loss of viability upon G0 to G1 transition

References:

Genotypes:

FYPO:0001886 - meiotic cell cycle entry and sporulation in haploid

References:

Genotypes:

FYPO:0006996 - normal antisense RNA level

References:

Genotypes:

FYPO:0006426 - normal attachment of spindle microtubules to kinetochore during meiosis I

References:

Genotypes:

FYPO:0000674 - normal cell population growth at high temperature

References:

Genotypes:

FYPO:0002141 - normal cell population growth at low temperature

References:

Genotypes:

FYPO:0001870 - normal centromere clustering at nuclear periphery during vegetative growth

References:

Genotypes:

FYPO:0002360 - normal chromatin silencing at centromere

References:

Genotypes:

FYPO:0004742 - normal chromatin silencing at centromere outer repeat

References:

Genotypes:

FYPO:0002336 - normal chromatin silencing at silent mating-type cassette

References:

Genotypes:

FYPO:0002219 - normal chromosome disjunction at meiosis I

References:

Genotypes:

FYPO:0001383 - normal DNA content

References:

Genotypes:

FYPO:0003353 - normal DNA double-strand break formation at mating-type locus

References:

Genotypes:

FYPO:0007553 - normal G1 to G0 transition

References:

Genotypes:

FYPO:0007425 - normal gene conversion

References:

Genotypes:

FYPO:0006811 - normal gross chromosomal rearrangement frequency

References:

Genotypes:

FYPO:0001164 - normal growth on glucose carbon source

References:

Genotypes:

FYPO:0000964 - normal growth on thiabendazole

References:

Genotypes:

FYPO:0002610 - normal histone H2A phosphorylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0002613 - normal histone H2A phosphorylation at mating type locus during vegetative growth

References:

Genotypes:

FYPO:0004743 - normal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0002358 - normal histone H3-K9 dimethylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0002359 - normal histone H3-K9 dimethylation at telomere during vegetative growth

References:

Genotypes:

FYPO:0006683 - normal histone H3-K9 methylation at centromere inner repeat during vegetative growth

References:

Genotypes:

FYPO:0003235 - normal histone H3-K9 methylation at centromere outer repeat during vegetative growth

References:

Genotypes:

FYPO:0005865 - normal histone H3-K9 methylation at silent mating-type cassette during vegetative growth

References:

Genotypes:

FYPO:0003176 - normal meiotic chromosome segregation

References:

Genotypes:

FYPO:0003613 - normal meiotic sister chromatid cohesion during meiotic prophase I

References:

Genotypes:

FYPO:0004093 - normal meiotic telomere clustering

References:

Genotypes:

FYPO:0002356 - normal methylated histone residue binding

References:

Genotypes:

FYPO:0003246 - normal mitotic S phase progression

References:

Genotypes:

FYPO:0002390 - normal mitotic sister chromatid cohesion

References:

Genotypes:

FYPO:0001513 - normal mitotic sister chromatid segregation

References:

Genotypes:

FYPO:0000833 - normal protein level during vegetative growth

References:

Genotypes:

FYPO:0002574 - normal protein localization to centromere during vegetative growth

References:

Genotypes:

FYPO:0005072 - normal protein localization to centromeric chromatin

References:

Genotypes:

FYPO:0005079 - normal protein localization to chromatin at centromere central core

References:

Genotypes:

FYPO:0007278 - normal protein localization to euchromatin

References:

Genotypes:

FYPO:0002389 - normal protein localization to heterochromatin at centromere outer repeat

References:

Genotypes:

FYPO:0004378 - normal protein localization to heterochromatin at silent mating-type cassette

References:

Genotypes:

FYPO:0003576 - normal protein localization to subtelomeric heterochromatin

References:

Genotypes:

FYPO:0004422 - normal protein phosphorylation

References:

Genotypes:

FYPO:0002357 - normal protein-RNA interaction

References:

Genotypes:

FYPO:0001317 - normal RNA level during vegetative growth

References:

Genotypes:

FYPO:0003530 - normal S-phase DNA damage checkpoint

References:

Genotypes:

FYPO:0000943 - normal spore morphology

References:

Genotypes:

FYPO:0005527 - normal subtelomeric chromatin knob formation

References:

Genotypes:

FYPO:0002687 - normal telomere length during vegetative growth

References:

Genotypes:

FYPO:0004924 - normal telomere tethering at nuclear periphery during vegetative growth

References:

Genotypes:

FYPO:0004579 - normal transposable element-derived small RNA level

References:

Genotypes:

FYPO:0001357 - normal vegetative cell population growth

References:

Genotypes:

FYPO:0007629 - normal viability during G0

References:

Genotypes:

FYPO:0000416 - premature mitotic sister chromatid separation

References:

Genotypes:

FYPO:0001984 - protein absent from cell during vegetative growth

References:

Genotypes:

FYPO:0009038 - resistance to egtazic acid

References:

Genotypes:

FYPO:0003383 - resistance to tert-butyl hydroperoxide

References:

Genotypes:

FYPO:0001098 - sensitive to 4-nitroquinoline N-oxide

References:

Genotypes:

FYPO:0004325 - sensitive to 5-fluorouracil

References:

Genotypes:

FYPO:0000084 - sensitive to 6-azauracil

References:

Genotypes:

FYPO:0000097 - sensitive to caffeine during vegetative growth

References:

Genotypes:

FYPO:0003840 - sensitive to carbendazim

References:

Genotypes:

FYPO:0000104 - sensitive to cycloheximide

References:

Genotypes:

FYPO:0000799 - sensitive to diamide

References:

Genotypes:

FYPO:0000842 - sensitive to ethanol during vegetative growth

References:

Genotypes:

FYPO:0000785 - sensitive to formamide

References:

Genotypes:

FYPO:0000088 - sensitive to hydroxyurea

References:

Genotypes:

FYPO:0001719 - sensitive to lithium

References:

Genotypes:

FYPO:0009088 - sensitive to magnesium chloride and sodium dodecyl sulfate

References:

Genotypes:

FYPO:0000091 - sensitive to thiabendazole

References:

Genotypes:

FYPO:0001457 - sensitive to tunicamycin

References:

Genotypes:

FYPO:0003656 - sensitive to vanadate

References:

Genotypes:

FYPO:0000022 - shmoo with long tip

References:

Genotypes:

FYPO:0007304 - short bipolar mitotic spindle during anaphase

References:

Genotypes:

FYPO:0003182 - sister chromatid nondisjunction at meiosis II

References:

Genotypes:

FYPO:0002060 - viable vegetative cell population

References:

Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011065 - conserved in eukaryotes

PBO:0011071 - conserved in eukaryotes only

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0000055 - no apparent S. cerevisiae ortholog

Protein features

IDNameInterPro nameDB name
PF00385ChromoChromo_domainPfam
PF01393Chromo_shadowChromo_shadow_domPfam
cd18637CD_Swi6_likeCDD
cd18657CSD_Swi6CDD
PS00598CHROMO_1Chromodomain_CSPROSITE patterns
PS50013CHROMO_2Chromo/chromo_shadow_domPROSITE profiles
SM00298CHROMOChromo/chromo_shadow_domSMART
SM00300ChShChromo_shadow_domSMART
G3DSA:2.40.50.40:FF:000055CATH-FunFam
G3DSA:2.40.50.40:FF:000081CATH-FunFam
G3DSA:2.40.50.40CATH-Gene3D
SSF54160Chromo-like_dom_sfSUPERFAMILY
PTHR22812Heterochromatin_chromo-domainPANTHER
CoilCOILS
mobidb-lite-Disorderdisorder_predictionMobiDB-Disorder
mobidb-lite-Negative-Polyelectrolytedisorder_predictionMobiDB-Negative-Polyelectrolyte
mobidb-lite-Polyampholytedisorder_predictionMobiDB-Polyampholyte
mobidb-lite-Positive-Polyelectrolytedisorder_predictionMobiDB-Positive-Polyelectrolyte

Orthologs

References / Literature

PMID:32269268 - Abo1 is required for the H3K9me2 to H3K9me3 transition in heterochromatin.
Dong W et al. Sci Rep 2020 Apr 08;10(1):6055
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