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protein coding gene - dmc1 (SPAC8E11.03c) - RecA family ATPase Dmc1

Gene summary

Standard name
dmc1
Systematic ID
SPAC8E11.03c
Product
RecA family ATPase Dmc1
Organism
Schizosaccharomyces pombe (fission yeast)
Synonyms
dmp1
UniProt ID
O42634
ORFeome ID
16/16E09
Characterisation status
biological role published
Feature type
mRNA gene
Genomic location
chromosome I: 3382264..3383404 forward strand

Annotation

Disease association

MONDO:0005047 - infertility disorder

References:

GO biological process

GO:0000730 - DNA recombinase assembly

References:

GO:0042148 - DNA strand invasion

References:

GO:0006311 - meiotic gene conversion

References:

GO:0000709 - meiotic joint molecule formation

References:

GO:0010774 - meiotic strand invasion involved in reciprocal meiotic recombination

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GO:0006312 - mitotic recombination

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GO:0007131 - reciprocal meiotic recombination

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GO cellular component

GO:0000794 - condensed nuclear chromosome

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GO:0005829 - cytosol

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GO:0005634 - nucleus

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GO molecular function

GO:0005524 - ATP binding

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GO:0016887 - ATP hydrolysis activity

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GO:0008094 - ATP-dependent activity, acting on DNA

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GO:0140664 - ATP-dependent DNA damage sensor activity

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GO:0000150 - DNA strand exchange activity

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GO:0003690 - double-stranded DNA binding

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GO:0005515 - protein binding

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GO:0003697 - single-stranded DNA binding

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GO:1905334 - Swi5-Sfr1 complex binding

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Genome organisation

PBO:0002024 - co-expressed with adjacent tandem gene

Multi-locus phenotype

FYPO:0005658 - abnormal frequency of meiotic crossover associated with gene conversion

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Genotypes:

FYPO:0004159 - abnormal homologous chromosome segregation

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Genotypes:

FYPO:0002711 - abnormal nuclear separation after meiosis

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Genotypes:

FYPO:0005660 - decreased frequency of meiotic crossover associated with gene conversion

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Genotypes:

FYPO:0002485 - decreased intergenic meiotic recombination

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Genotypes:

FYPO:0003179 - decreased intragenic meiotic recombination

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Genotypes:

FYPO:0000581 - decreased spore germination frequency

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Genotypes:

FYPO:0005137 - delayed onset of meiotic DNA double-strand break formation

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Genotypes:

FYPO:0006419 - increased duration of Rad51 focus presence during meiotic cell cycle

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Genotypes:

FYPO:0005659 - increased frequency of meiotic crossover associated with gene conversion

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Genotypes:

FYPO:0005657 - normal frequency of meiotic crossover associated with gene conversion

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Genotypes:

FYPO:0004993 - normal spore germination frequency

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Genotypes:

Protein features

PBO:0111792 - AAA family ATPase

PBO:0111851 - helix-hairpin-helix

PBO:0111850 - RecA family

Qualitative gene expression

PomGeneEx:0000019 - protein level decreased

References:

PomGeneEx:0000018 - protein level increased

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PomGeneEx:0000011 - RNA level increased

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Quantitative gene expression

PBO:0011963 - RNA level

References:

Single locus phenotype

FYPO:0002711 - abnormal nuclear separation after meiosis

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Genotypes:

FYPO:0009053 - decreased cell population growth on glutamate nitrogen source

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Genotypes:

FYPO:0009092 - decreased cell population growth on lysine and serine nitrogen source

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Genotypes:

FYPO:0000250 - decreased cell population growth on proline nitrogen source

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Genotypes:

FYPO:0000185 - decreased gene conversion during vegetative growth

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Genotypes:

FYPO:0002485 - decreased intergenic meiotic recombination

References:

Genotypes:

FYPO:0003179 - decreased intragenic meiotic recombination

References:

Genotypes:

FYPO:0000708 - decreased mating efficiency

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Genotypes:

FYPO:0000485 - decreased meiotic recombination

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Genotypes:

FYPO:0000581 - decreased spore germination frequency

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Genotypes:

FYPO:0006012 - elongated cell with abolished shmoo formation

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Genotypes:

FYPO:0004557 - increased vegetative cell population growth

References:

Genotypes:

FYPO:0005657 - normal frequency of meiotic crossover associated with gene conversion

References:

Genotypes:

FYPO:0005136 - normal meiotic DNA double-strand break formation

References:

Genotypes:

FYPO:0005138 - normal meiotic recombination double-strand break repair

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Genotypes:

FYPO:0004993 - normal spore germination frequency

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Genotypes:

FYPO:0009038 - resistance to egtazic acid

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Genotypes:

FYPO:0009087 - resistance to magnesium chloride and sodium dodecyl sulfate

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Genotypes:

FYPO:0003383 - resistance to tert-butyl hydroperoxide

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Genotypes:

FYPO:0007933 - sensitive to 2,2′-dipyridyl

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Genotypes:

FYPO:0001097 - sensitive to amitrole

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Genotypes:

FYPO:0009067 - sensitive to amorolfine

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Genotypes:

FYPO:0006680 - sensitive to bisphenol A

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Genotypes:

FYPO:0006930 - sensitive to butylated hydroxyanisole

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Genotypes:

FYPO:0009069 - sensitive to ciclopirox olamine

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Genotypes:

FYPO:0000799 - sensitive to diamide

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Genotypes:

FYPO:0009086 - sensitive to lithium chloride and sodium dodecyl sulfate

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Genotypes:

FYPO:0003358 - sensitive to miconazole

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Genotypes:

FYPO:0001491 - viable vegetative cell

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Genotypes:

FYPO:0002060 - viable vegetative cell population

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Genotypes:

FYPO:0002177 - viable vegetative cell with normal cell morphology

References:

Genotypes:

Taxonomic conservation

PBO:0011067 - conserved in bacteria

PBO:0011065 - conserved in eukaryotes

PBO:0011064 - conserved in fungi

PBO:0011069 - conserved in metazoa

PBO:0011070 - conserved in vertebrates

PBO:0006222 - predominantly single copy (one to one)

Protein features

IDNameInterPro nameDB name
PF08423Rad51Rad51_CPFAM
cd19514DMC1CDD
PS50162RECA_2RecA_ATP-bdPROSITE_PROFILES
PS50163RECA_3RecA_monomer-monomer_interfacePROSITE_PROFILES
SM00382AAA_5AAA+_ATPaseSMART
G3DSA:3.40.50.300:FF:000239FUNFAM
G3DSA:1.10.150.20:FF:000032FUNFAM
SSF52540P-loop containing nucleoside triphosphate hydrolasesP-loop_NTPaseSUPERFAMILY
SSF47794Rad51 N-terminal domain-likeDNA_repair_Rad51/TF_NusA_a-hlxSUPERFAMILY
G3DSA:1.10.150.20GENE3D
G3DSA:3.40.50.300P-loop_NTPaseGENE3D
PTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERPANTHER
PIRSF005856Rad51DNA_recomb/repair_RecA-likePIRSF
TIGR02238recomb_DMC1Dmc1NCBIFAM
NF003301PRK04301.1NCBIFAM

Orthologs

References / Literature

PMID:12032093 - The meiotic recombination checkpoint is regulated by checkpoint rad+ genes in fission yeast.
Shimada M et al. EMBO J 2002 Jun 03;21(11):2807-18
PMID:20473289 - Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.
Kim DU et al. Nat Biotechnol 2010 Jun;28(6):617-623
PMID:32414915 - Two auxiliary factors promote Dmc1-driven DNA strand exchange via stepwise mechanisms.
Tsubouchi H et al. Proc Natl Acad Sci U S A 2020 Jun 02;117(22):12062-12070
PMID:39367033 - Quantitative proteomics and phosphoproteomics profiling of meiotic divisions in the fission yeast Schizosaccharomyces pombe.
Sivakova B et al. Sci Rep 2024 Oct 04;14(1):23105
PMID:23101633 - Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells.
Marguerat S et al. Cell 2012 Oct 26;151(3):671-83
PMID:15899844 - Fission yeast rad51 and dmc1, two efficient DNA recombinases forming helical nucleoprotein filaments.
Sauvageau S et al. Mol Cell Biol 2005 Jun;25(11):4377-87
PMID:18818364 - Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.
Roguev A et al. Science 2008 Oct 17;322(5900):405-10
PMID:19037101 - Mus81, Rhp51(Rad51), and Rqh1 form an epistatic pathway required for the S-phase DNA damage checkpoint.
Willis N et al. Mol Biol Cell 2009 Feb;20(3):819-33
PMID:20655467 - Crossover invariance determined by partner choice for meiotic DNA break repair.
Hyppa RW et al. Cell 2010 Jul 23;142(2):243-55
PMID:18566005 - Structural and functional analyses of the DMC1-M200V polymorphism found in the human population.
Hikiba J et al. Nucleic Acids Res 2008 Jul;36(12):4181-90
PMID:21340088 - Microarray-based target identification using drug hypersensitive fission yeast expressing ORFeome.
Arita Y et al. Mol Biosyst 2011 May;7(5):1463-72
PMID:15238514 - Conserved and nonconserved proteins for meiotic DNA breakage and repair in yeasts.
Young JA et al. Genetics 2004 Jun;167(2):593-605
PMID:21511999 - Comparative functional genomics of the fission yeasts.
Rhind N et al. Science 2011 May 20;332(6032):930-6
PMID:26771498 - A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.
Vo TV et al. Cell 2016 Jan 14;164(1-2):310-323
PMID:37787768 - Broad functional profiling of fission yeast proteins using phenomics and machine learning.
Rodríguez-López M et al. Elife 2023 Oct 03;12
PMID:34208949 - Mapping and Analysis of Swi5 and Sfr1 Phosphorylation Sites.
Sevcovicova A et al. Genes (Basel) 2021 Jun 30;12(7)
PMID:39340300 - The Swi5-Sfr1 complex regulates Dmc1- and Rad51-driven DNA strand exchange proceeding through two distinct three-stranded intermediates by different mechanisms.
Ito K et al. Nucleic Acids Res 2024 Sep 28;
PMID:16921379 - The Swi5-Sfr1 complex stimulates Rhp51/Rad51- and Dmc1-mediated DNA strand exchange in vitro.
Haruta N et al. Nat Struct Mol Biol 2006 Sep;13(9):823-30
PMID:12161753 - The transcriptional program of meiosis and sporulation in fission yeast.
Mata J et al. Nat Genet 2002 Sep;32(1):143-7
PMID:14551247 - Schizosaccharomyces pombe Rdh54 (TID1) acts with Rhp54 (RAD54) to repair meiotic double-strand breaks.
Catlett MG et al. Mol Biol Cell 2003 Nov;14(11):4707-20
PMID:27304859 - Dbl2 Regulates Rad51 and DNA Joint Molecule Metabolism to Ensure Proper Meiotic Chromosome Segregation.
Polakova S et al. PLoS Genet 2016 Jun;12(6):e1006102
PMID:30647105 - Comparative Genomic Screen in Two Yeasts Reveals Conserved Pathways in the Response Network to Phenol Stress.
Alhoch B et al. G3 (Bethesda) 2019 Mar 07;9(3):639-650
PMID:23697806 - A genome-wide resource of cell cycle and cell shape genes of fission yeast.
Hayles J et al. Open Biol 2013 May 22;3(5):130053
GO_REF:0000002 - Comments
PMID:15210864 - Mcp7, a meiosis-specific coiled-coil protein of fission yeast, associates with Meu13 and is required for meiotic recombination.
Saito TT et al. Nucleic Acids Res 2004;32(11):3325-39
GO_REF:0000051 - S. pombe keyword mapping
PMID:25414342 - Rad51/Dmc1 paralogs and mediators oppose DNA helicases to limit hybrid DNA formation and promote crossovers during meiotic recombination.
Lorenz A et al. Nucleic Acids Res 2014 Dec 16;42(22):13723-35
PMID:28410370 - A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion.
Dudin O et al. PLoS Genet 2017 Apr;13(4):e1006721
GO_REF:0000033 - Annotation inferences using phylogenetic trees
PMID:22681890 - Hierarchical modularity and the evolution of genetic interactomes across species.
Ryan CJ et al. Mol Cell 2012 Jun 08;46(5):691-704
PMID:22855558 - Meiotic DNA joint molecule resolution depends on Nse5-Nse6 of the Smc5-Smc6 holocomplex.
Wehrkamp-Richter S et al. Nucleic Acids Res 2012 Oct;40(19):9633-46
PMID:14668362 - Five RecA-like proteins of Schizosaccharomyces pombe are involved in meiotic recombination.
Grishchuk AL et al. Genetics 2003 Nov;165(3):1031-43
PMID:20118936 - Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.
Lantermann AB et al. Nat Struct Mol Biol 2010 Feb;17(2):251-7
PMID:24186976 - Dual regulation of Dmc1-driven DNA strand exchange by Swi5-Sfr1 activation and Rad22 inhibition.
Murayama Y et al. Genes Dev 2013 Nov 01;27(21):2299-304
PMID:19028606 - Functional interactions of meiotic recombination factors Rdh54 and Dmc1.
Chi P et al. DNA Repair (Amst) 2009 Feb 01;8(2):279-84
PMID:16823372 - ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
Matsuyama A et al. Nat Biotechnol 2006 Jul;24(7):841-7
PMID:10908327 - Dmc1 of Schizosaccharomyces pombe plays a role in meiotic recombination.
Fukushima K et al. Nucleic Acids Res 2000 Jul 15;28(14):2709-16